Back to the Tutorials List
Tutorial: itk-elastix and MONAI
- Konstantinos Ntatsis (Leiden University Medical Center)
- Niels Dekker (Leiden University Medical Center)
We will start with a general introduction of the elastix image registration toolbox.
The tutorial itself will be about itk-elastix, a python wrapping of the elastix.
We will demonstrate how to register and transform (brain) images, and how itk-elastix can
be used together with the medical deep learning library MONAI.
Duration: 0.5 hours.
- Outcome 1. Get an overview of elastix
- Outcome 2. Use itk-elastix to register and transform brain images
- Outcome 3. Find additional documentation, example notebooks and parameter file zoo
- Outcome 4. Bridge images and transforms between ITK/Elastix and MONAI
Approach and Materials
Interactive tutorial based on:
Background and References