itkFreeSurferAsciiMeshIO.h

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/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         https://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
 
#ifndef itkFreeSurferAsciiMeshIO_h
#define itkFreeSurferAsciiMeshIO_h
#include "ITKIOMeshFreeSurferExport.h"
 
#include "itkMeshIOBase.h"
#include "itkMakeUniqueForOverwrite.h"
 
#include <fstream>
#include "itkNumberToString.h"
 
namespace itk
{
 
class ITKIOMeshFreeSurfer_EXPORT FreeSurferAsciiMeshIO : public MeshIOBase
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(FreeSurferAsciiMeshIO);

  using Self = FreeSurferAsciiMeshIO;
  using Superclass = MeshIOBase;
  using ConstPointer = SmartPointer<const Self>;
  using Pointer = SmartPointer<Self>;
 
  using SizeValueType = Superclass::SizeValueType;

  itkNewMacro(Self);

  itkOverrideGetNameOfClassMacro(FreeSurferAsciiMeshIO);
 
  /*-------- This part of the interfaces deals with reading data. ----- */

  bool
  CanReadFile(const char * fileName) override;

  void
  ReadMeshInformation() override;

  void
  ReadPoints(void * buffer) override;
 
  void
  ReadCells(void * buffer) override;
 
  void
  ReadPointData(void * buffer) override;
 
  void
  ReadCellData(void * buffer) override;
 
  /*-------- This part of the interfaces deals with writing data. ----- */

  bool
  CanWriteFile(const char * fileName) override;

  void
  WriteMeshInformation() override;

  void
  WritePoints(void * buffer) override;
 
  void
  WriteCells(void * buffer) override;
 
  void
  WritePointData(void * buffer) override;
 
  void
  WriteCellData(void * buffer) override;
 
  void
  Write() override;
 
protected:
  template <typename T>
  void
  WritePoints(T * buffer, std::ofstream & outputFile, T label = T{})
  {
    SizeValueType index = 0;
    for (SizeValueType ii = 0; ii < this->m_NumberOfPoints; ++ii)
    {
      for (unsigned int jj = 0; jj < this->m_PointDimension; ++jj)
      {
        outputFile << ConvertNumberToString(buffer[index++]) << "  ";
      }
      outputFile << label << '\n';
    }
  }

  template <typename T>
  void
  WriteCells(T * buffer, std::ofstream & outputFile, T label = T{})
  {
    constexpr unsigned int numberOfCellPoints{ 3 };
    SizeValueType          index = 0;
 
    const auto data = make_unique_for_overwrite<T[]>(this->m_NumberOfCells * numberOfCellPoints);
 
    ReadCellsBuffer(buffer, data.get());
 
    for (SizeValueType ii = 0; ii < this->m_NumberOfCells; ++ii)
    {
      for (unsigned int jj = 0; jj < numberOfCellPoints; ++jj)
      {
        outputFile << data[index++] << "  ";
      }
      outputFile << label << '\n';
    }
  }

  template <typename TInput, typename TOutput>
  void
  ReadCellsBuffer(TInput * input, TOutput * output)
  {
    if (input && output)
    {
      for (SizeValueType ii = 0; ii < this->m_NumberOfCells; ++ii)
      {
        for (unsigned int jj = 0; jj < 3; ++jj)
        {

          output[ii * 3 + jj] = static_cast<TOutput>(input[5 * ii + jj + 2]);
        }
      }
    }
  }
 
protected:
  FreeSurferAsciiMeshIO();
  ~FreeSurferAsciiMeshIO() override;
  void
  PrintSelf(std::ostream & os, Indent indent) const override;
 
  void
  OpenFile();
 
  void
  CloseFile();
 
private:
  std::ifstream m_InputFile{};
};
} // end namespace itk
 
#endif