itkLevelSetEvolution.h

Go to the documentation of this file.

/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         https://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkLevelSetEvolution_h
#define itkLevelSetEvolution_h
 
#include "itkLevelSetEvolutionBase.h"
#include "itkLevelSetDenseImage.h"
 
#include "itkWhitakerSparseLevelSetImage.h"
#include "itkUpdateWhitakerSparseLevelSet.h"
 
#include "itkShiSparseLevelSetImage.h"
#include "itkUpdateShiSparseLevelSet.h"
 
#include "itkMalcolmSparseLevelSetImage.h"
#include "itkUpdateMalcolmSparseLevelSet.h"
 
#include "itkLevelSetEvolutionComputeIterationThreader.h"
#include "itkLevelSetEvolutionUpdateLevelSetsThreader.h"
 
namespace itk
{
template <typename TEquationContainer, typename TLevelSet>
class ITK_TEMPLATE_EXPORT LevelSetEvolution{};
 
template <typename TEquationContainer, typename TImage>
class ITK_TEMPLATE_EXPORT LevelSetEvolution<TEquationContainer, LevelSetDenseImage<TImage>>
  : public LevelSetEvolutionBase<TEquationContainer, LevelSetDenseImage<TImage>>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(LevelSetEvolution);
 
  using LevelSetType = LevelSetDenseImage<TImage>;
 
  using Self = LevelSetEvolution;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
  using Superclass = LevelSetEvolutionBase<TEquationContainer, LevelSetType>;

  itkNewMacro(Self);

  itkOverrideGetNameOfClassMacro(LevelSetEvolution);
 
  using typename Superclass::EquationContainerType;
  using typename Superclass::EquationContainerPointer;
  using typename Superclass::TermContainerType;
  using typename Superclass::TermContainerPointer;
 
  using typename Superclass::TermType;
  using typename Superclass::TermPointer;
 
  using typename Superclass::InputImageType;
  using typename Superclass::InputImagePixelType;
  using typename Superclass::InputImageConstPointer;
  using typename Superclass::InputImageRegionType;
  using typename Superclass::InputPixelRealType;
 
  static constexpr unsigned int ImageDimension = Superclass::ImageDimension;
 
  using typename Superclass::LevelSetContainerType;
 
  using typename Superclass::LevelSetIdentifierType;
 
  using LevelSetImageType = typename LevelSetType::ImageType;
 
  using typename Superclass::LevelSetOutputType;
  using typename Superclass::LevelSetOutputRealType;
  using typename Superclass::LevelSetDataType;
 
  using typename Superclass::IdListType;
  using typename Superclass::IdListIterator;
  using typename Superclass::IdListConstIterator;
  using typename Superclass::IdListImageType;
  using typename Superclass::CacheImageType;
  using typename Superclass::DomainMapImageFilterType;
 
  using typename Superclass::StoppingCriterionType;
  using typename Superclass::StoppingCriterionPointer;
 
  using ThresholdFilterType = BinaryThresholdImageFilter<LevelSetImageType, LevelSetImageType>;
  using ThresholdFilterPointer = typename ThresholdFilterType::Pointer;
 
  using MaurerType = SignedMaurerDistanceMapImageFilter<LevelSetImageType, LevelSetImageType>;
  using MaurerPointer = typename MaurerType::Pointer;
 
  using LevelSetImageIteratorType = ImageRegionIteratorWithIndex<LevelSetImageType>;
 
  using LevelSetImageConstIteratorType = ImageRegionConstIteratorWithIndex<LevelSetImageType>;
 
  using InputImageConstIteratorType = ImageRegionConstIteratorWithIndex<InputImageType>;

  void
  SetNumberOfWorkUnits(const ThreadIdType numberOfThreads);

  ThreadIdType
  GetNumberOfWorkUnits() const;
 
  ~LevelSetEvolution() override = default;
 
protected:
  LevelSetEvolution();

  void
  AllocateUpdateBuffer() override;

  void
  ComputeIteration() override;

  void
  ComputeTimeStepForNextIteration() override;

  void
  UpdateLevelSets() override;

  void
  UpdateEquations() override;

  void
  ReinitializeToSignedDistance();
 
  typename LevelSetContainerType::Pointer m_UpdateBuffer{};
 
  friend class LevelSetEvolutionComputeIterationThreader<LevelSetType,
                                                         ThreadedImageRegionPartitioner<TImage::ImageDimension>,
                                                         Self>;
  using SplitLevelSetComputeIterationThreaderType =
    LevelSetEvolutionComputeIterationThreader<LevelSetType,
                                              ThreadedImageRegionPartitioner<TImage::ImageDimension>,
                                              Self>;
  typename SplitLevelSetComputeIterationThreaderType::Pointer m_SplitLevelSetComputeIterationThreader{};
 
  using DomainMapConstIteratorType = typename DomainMapImageFilterType::DomainMapType::const_iterator;
  using ThreadedDomainMapPartitionerType = ThreadedIteratorRangePartitioner<DomainMapConstIteratorType>;
  friend class LevelSetEvolutionComputeIterationThreader<LevelSetType, ThreadedDomainMapPartitionerType, Self>;
  using SplitDomainMapComputeIterationThreaderType =
    LevelSetEvolutionComputeIterationThreader<LevelSetType, ThreadedDomainMapPartitionerType, Self>;
  typename SplitDomainMapComputeIterationThreaderType::Pointer m_SplitDomainMapComputeIterationThreader{};
 
  friend class LevelSetEvolutionUpdateLevelSetsThreader<LevelSetType,
                                                        ThreadedImageRegionPartitioner<TImage::ImageDimension>,
                                                        Self>;
  using SplitLevelSetUpdateLevelSetsThreaderType =
    LevelSetEvolutionUpdateLevelSetsThreader<LevelSetType,
                                             ThreadedImageRegionPartitioner<TImage::ImageDimension>,
                                             Self>;
  typename SplitLevelSetUpdateLevelSetsThreaderType::Pointer m_SplitLevelSetUpdateLevelSetsThreader{};

  const IdListType * m_IdListToProcessWhenThreading{};
};
 
 
template <typename TEquationContainer, typename TOutput, unsigned int VDimension>
class ITK_TEMPLATE_EXPORT LevelSetEvolution<TEquationContainer, WhitakerSparseLevelSetImage<TOutput, VDimension>>
  : public LevelSetEvolutionBase<TEquationContainer, WhitakerSparseLevelSetImage<TOutput, VDimension>>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(LevelSetEvolution);
 
  using LevelSetType = WhitakerSparseLevelSetImage<TOutput, VDimension>;
 
  using Self = LevelSetEvolution;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
  using Superclass = LevelSetEvolutionBase<TEquationContainer, LevelSetType>;

  itkNewMacro(Self);

  itkOverrideGetNameOfClassMacro(LevelSetEvolution);
 
  using typename Superclass::EquationContainerType;
  using typename Superclass::EquationContainerPointer;
  using typename Superclass::TermContainerType;
  using typename Superclass::TermContainerPointer;
 
  using typename Superclass::TermType;
  using typename Superclass::TermPointer;
 
  using typename Superclass::InputImageType;
  using typename Superclass::InputImagePixelType;
  using typename Superclass::InputImageConstPointer;
  using typename Superclass::InputImageRegionType;
  using typename Superclass::InputPixelRealType;
 
  static constexpr unsigned int ImageDimension = Superclass::ImageDimension;
 
  using typename Superclass::LevelSetContainerType;
  using typename Superclass::LevelSetIdentifierType;
 
  using typename Superclass::LevelSetInputType;
  using typename Superclass::LevelSetOutputType;
  using typename Superclass::LevelSetOutputRealType;
  using typename Superclass::LevelSetDataType;
 
  using LevelSetLayerType = typename LevelSetType::LayerType;
 
  using LevelSetLabelMapType = typename LevelSetType::LabelMapType;
  using LevelSetLabelMapPointer = typename LevelSetType::LabelMapPointer;
 
 
  using typename Superclass::IdListType;
  using typename Superclass::IdListIterator;
  using typename Superclass::IdListImageType;
  using typename Superclass::CacheImageType;
  using typename Superclass::DomainMapImageFilterType;
 
  using typename Superclass::StoppingCriterionType;
  using typename Superclass::StoppingCriterionPointer;
 
  using InputImageConstIteratorType = ImageRegionConstIteratorWithIndex<InputImageType>;
 
  using UpdateLevelSetFilterType =
    UpdateWhitakerSparseLevelSet<ImageDimension, LevelSetOutputType, EquationContainerType>;
  using UpdateLevelSetFilterPointer = typename UpdateLevelSetFilterType::Pointer;

  void
  SetNumberOfWorkUnits(const ThreadIdType numberOfWorkUnits);

  ThreadIdType
  GetNumberOfWorkUnits() const;
 
protected:
  LevelSetEvolution();
  ~LevelSetEvolution() override;
 
  using NodePairType = std::pair<LevelSetInputType, LevelSetOutputType>;
 
  // For sparse case, the update buffer needs to be the size of the active layer
  std::map<IdentifierType, LevelSetLayerType *> m_UpdateBuffer{};

  void
  AllocateUpdateBuffer() override;

  void
  ComputeIteration() override;

  void
  ComputeTimeStepForNextIteration() override;

  void
  UpdateLevelSets() override;

  void
  UpdateEquations() override;
 
  using SplitLevelSetPartitionerType = ThreadedIteratorRangePartitioner<typename LevelSetType::LayerConstIterator>;
  friend class LevelSetEvolutionComputeIterationThreader<LevelSetType, SplitLevelSetPartitionerType, Self>;
  using SplitLevelSetComputeIterationThreaderType =
    LevelSetEvolutionComputeIterationThreader<LevelSetType, SplitLevelSetPartitionerType, Self>;
  typename SplitLevelSetComputeIterationThreaderType::Pointer m_SplitLevelSetComputeIterationThreader{};
};
 
 
// Shi
template <typename TEquationContainer, unsigned int VDimension>
class ITK_TEMPLATE_EXPORT LevelSetEvolution<TEquationContainer, ShiSparseLevelSetImage<VDimension>>
  : public LevelSetEvolutionBase<TEquationContainer, ShiSparseLevelSetImage<VDimension>>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(LevelSetEvolution);
 
  using LevelSetType = ShiSparseLevelSetImage<VDimension>;
 
  using Self = LevelSetEvolution;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
  using Superclass = LevelSetEvolutionBase<TEquationContainer, LevelSetType>;

  itkNewMacro(Self);

  itkOverrideGetNameOfClassMacro(LevelSetEvolution);
 
  using typename Superclass::EquationContainerType;
  using typename Superclass::EquationContainerPointer;
  using typename Superclass::TermContainerType;
  using typename Superclass::TermContainerPointer;
 
  using typename Superclass::TermType;
  using typename Superclass::TermPointer;
 
  using typename Superclass::InputImageType;
  using typename Superclass::InputImagePixelType;
  using typename Superclass::InputImageConstPointer;
  using typename Superclass::InputImageRegionType;
  using typename Superclass::InputPixelRealType;
 
  static constexpr unsigned int ImageDimension = Superclass::ImageDimension;
 
  using typename Superclass::LevelSetContainerType;
  using typename Superclass::LevelSetIdentifierType;
 
  using typename Superclass::LevelSetInputType;
  using typename Superclass::LevelSetOutputType;
  using typename Superclass::LevelSetOutputRealType;
  using typename Superclass::LevelSetDataType;
 
  using LevelSetLayerType = typename LevelSetType::LayerType;
 
  using LevelSetLabelMapType = typename LevelSetType::LabelMapType;
  using LevelSetLabelMapPointer = typename LevelSetType::LabelMapPointer;
 
 
  using typename Superclass::IdListType;
  using typename Superclass::IdListIterator;
  using typename Superclass::IdListImageType;
  using typename Superclass::CacheImageType;
  using typename Superclass::DomainMapImageFilterType;
 
  using typename Superclass::StoppingCriterionType;
  using typename Superclass::StoppingCriterionPointer;
 
  using InputImageConstIteratorType = ImageRegionConstIteratorWithIndex<InputImageType>;
 
  using UpdateLevelSetFilterType = UpdateShiSparseLevelSet<ImageDimension, EquationContainerType>;
  using UpdateLevelSetFilterPointer = typename UpdateLevelSetFilterType::Pointer;
 
  LevelSetEvolution() = default;
  ~LevelSetEvolution() override = default;
 
protected:
  void
  UpdateLevelSets() override;

  void
  UpdateEquations() override;
};
 
// Malcolm
template <typename TEquationContainer, unsigned int VDimension>
class ITK_TEMPLATE_EXPORT LevelSetEvolution<TEquationContainer, MalcolmSparseLevelSetImage<VDimension>>
  : public LevelSetEvolutionBase<TEquationContainer, MalcolmSparseLevelSetImage<VDimension>>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(LevelSetEvolution);
 
  using LevelSetType = MalcolmSparseLevelSetImage<VDimension>;
 
  using Self = LevelSetEvolution;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
  using Superclass = LevelSetEvolutionBase<TEquationContainer, LevelSetType>;

  itkNewMacro(Self);

  itkOverrideGetNameOfClassMacro(LevelSetEvolution);
 
  using typename Superclass::EquationContainerType;
  using typename Superclass::EquationContainerPointer;
  using typename Superclass::TermContainerType;
  using typename Superclass::TermContainerPointer;
 
  using typename Superclass::TermType;
  using typename Superclass::TermPointer;
 
  using typename Superclass::InputImageType;
  using typename Superclass::InputImagePixelType;
  using typename Superclass::InputImageConstPointer;
  using typename Superclass::InputImageRegionType;
  using typename Superclass::InputPixelRealType;
 
  static constexpr unsigned int ImageDimension = Superclass::ImageDimension;
 
  using typename Superclass::LevelSetContainerType;
  using typename Superclass::LevelSetIdentifierType;
 
  using typename Superclass::LevelSetInputType;
  using typename Superclass::LevelSetOutputType;
  using typename Superclass::LevelSetOutputRealType;
  using typename Superclass::LevelSetDataType;
 
  using LevelSetLayerType = typename LevelSetType::LayerType;
  using LevelSetLayerIterator = typename LevelSetType::LayerIterator;
 
  using LevelSetLabelMapType = typename LevelSetType::LabelMapType;
  using LevelSetLabelMapPointer = typename LevelSetType::LabelMapPointer;
 
 
  using typename Superclass::IdListType;
  using typename Superclass::IdListIterator;
  using typename Superclass::IdListImageType;
  using typename Superclass::CacheImageType;
  using typename Superclass::DomainMapImageFilterType;
 
  using typename Superclass::StoppingCriterionType;
  using typename Superclass::StoppingCriterionPointer;
 
  using InputImageConstIteratorType = ImageRegionConstIteratorWithIndex<InputImageType>;
 
  using UpdateLevelSetFilterType = UpdateMalcolmSparseLevelSet<ImageDimension, EquationContainerType>;
  using UpdateLevelSetFilterPointer = typename UpdateLevelSetFilterType::Pointer;
 
  LevelSetEvolution() = default;
  ~LevelSetEvolution() override = default;
 
protected:
  void
  UpdateLevelSets() override;
  void
  UpdateEquations() override;
};
} // namespace itk
 
#ifndef ITK_MANUAL_INSTANTIATION
#  include "itkLevelSetEvolution.hxx"
#endif
 
#endif // itkLevelSetEvolution_h