itkPDEDeformableRegistrationFilter.h

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/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         https://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkPDEDeformableRegistrationFilter_h
#define itkPDEDeformableRegistrationFilter_h
 
#include "itkDenseFiniteDifferenceImageFilter.h"
#include "itkPDEDeformableRegistrationFunction.h"
 
namespace itk
{
template <typename TFixedImage, typename TMovingImage, typename TDisplacementField>
class ITK_TEMPLATE_EXPORT PDEDeformableRegistrationFilter
  : public DenseFiniteDifferenceImageFilter<TDisplacementField, TDisplacementField>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(PDEDeformableRegistrationFilter);

  using Self = PDEDeformableRegistrationFilter;
  using Superclass = DenseFiniteDifferenceImageFilter<TDisplacementField, TDisplacementField>;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;

  itkNewMacro(Self);

  itkOverrideGetNameOfClassMacro(PDEDeformableRegistrationFilter);

  using FixedImageType = TFixedImage;
  using FixedImagePointer = typename FixedImageType::Pointer;
  using FixedImageConstPointer = typename FixedImageType::ConstPointer;

  using MovingImageType = TMovingImage;
  using MovingImagePointer = typename MovingImageType::Pointer;
  using MovingImageConstPointer = typename MovingImageType::ConstPointer;

  using DisplacementFieldType = TDisplacementField;
  using DisplacementFieldPointer = typename DisplacementFieldType::Pointer;

  using typename Superclass::OutputImageType;

  using typename Superclass::FiniteDifferenceFunctionType;

  using PDEDeformableRegistrationFunctionType =
    PDEDeformableRegistrationFunction<FixedImageType, MovingImageType, DisplacementFieldType>;

  static constexpr unsigned int ImageDimension = Superclass::ImageDimension;

  itkSetInputMacro(FixedImage, FixedImageType);

  itkGetInputMacro(FixedImage, FixedImageType);

  itkSetInputMacro(MovingImage, MovingImageType);

  itkGetInputMacro(MovingImage, MovingImageType);

  itkSetInputMacro(InitialDisplacementField, DisplacementFieldType);

  itkGetInputMacro(InitialDisplacementField, DisplacementFieldType);

  DisplacementFieldType *
  GetDisplacementField()
  {
    return this->GetOutput();
  }

  std::vector<SmartPointer<DataObject>>::size_type
  GetNumberOfValidRequiredInputs() const override;

  itkSetMacro(SmoothDisplacementField, bool);
  itkGetConstMacro(SmoothDisplacementField, bool);
  itkBooleanMacro(SmoothDisplacementField);
  using StandardDeviationsType = FixedArray<double, ImageDimension>;

  itkSetMacro(StandardDeviations, StandardDeviationsType);
  virtual void
  SetStandardDeviations(double value);
  itkGetConstReferenceMacro(StandardDeviations, StandardDeviationsType);

  itkSetMacro(SmoothUpdateField, bool);
  itkGetConstMacro(SmoothUpdateField, bool);
  itkBooleanMacro(SmoothUpdateField);
  itkSetMacro(UpdateFieldStandardDeviations, StandardDeviationsType);
  virtual void
  SetUpdateFieldStandardDeviations(double value);
  itkGetConstReferenceMacro(UpdateFieldStandardDeviations, StandardDeviationsType);

  virtual void
  StopRegistration()
  {
    m_StopRegistrationFlag = true;
  }

  itkSetMacro(MaximumError, double);
  itkGetConstMacro(MaximumError, double);
  itkSetMacro(MaximumKernelWidth, unsigned int);
  itkGetConstMacro(MaximumKernelWidth, unsigned int);
protected:
  PDEDeformableRegistrationFilter();
  ~PDEDeformableRegistrationFilter() override = default;
  void
  PrintSelf(std::ostream & os, Indent indent) const override;

  bool
  Halt() override
  {
    if (m_StopRegistrationFlag)
    {
      return true;
    }
 
    return this->Superclass::Halt();
  }

  void
  CopyInputToOutput() override;

  void
  InitializeIteration() override;

  virtual void
  SmoothDisplacementField();

  virtual void
  SmoothUpdateField();

  void
  PostProcessOutput() override;

  void
  Initialize() override;

  void
  GenerateOutputInformation() override;

  void
  GenerateInputRequestedRegion() override;
 
private:
  StandardDeviationsType m_StandardDeviations{};
  StandardDeviationsType m_UpdateFieldStandardDeviations{};

  bool m_SmoothDisplacementField{};
  bool m_SmoothUpdateField{};

  DisplacementFieldPointer m_TempField{};
 
private:
  double m_MaximumError{};

  unsigned int m_MaximumKernelWidth{};

  bool m_StopRegistrationFlag{};
};
} // end namespace itk
 
#ifndef ITK_MANUAL_INSTANTIATION
#  include "itkPDEDeformableRegistrationFilter.hxx"
#endif
 
#endif