ITK/Examples/Iterators/NeighborhoodIterator

ITK Examples Baseline Iterators TestNeighborhoodIterator.png

This example demonstrates how to traverse an itkImage with access to a rectangular neighborhood around the center pixel of the iterator.

NeighborhoodIterator.cxx

#include "itkImage.h"
#include "itkImageFileReader.h"
#include "itkNeighborhoodIterator.h"
 
#include <itkImageToVTKImageFilter.h>
 
#include "vtkVersion.h"
#include "vtkImageViewer.h"
#include "vtkImageMapper3D.h"
#include "vtkRenderWindowInteractor.h"
#include "vtkSmartPointer.h"
#include "vtkImageActor.h"
#include "vtkInteractorStyleImage.h"
#include "vtkRenderer.h"
 
int main(int argc, char*argv[])
{
  if(argc < 2)
    {
    std::cerr << "Required: filename" << std::endl;
    return EXIT_FAILURE;
    }
 
  typedef itk::Image<unsigned char, 2>  ImageType;
 
  typedef itk::ImageFileReader<ImageType> ReaderType;
  ReaderType::Pointer reader = ReaderType::New();
  reader->SetFileName(argv[1]);
  reader->Update();
 
  ImageType::Pointer image = reader->GetOutput();
 
  ImageType::SizeType regionSize;
  regionSize[0] = 50;
  regionSize[1] = 1;
 
  ImageType::IndexType regionIndex;
  regionIndex[0] = 0;
  regionIndex[1] = 0;
 
  ImageType::RegionType region;
  region.SetSize(regionSize);
  region.SetIndex(regionIndex);
 
  ImageType::SizeType radius;
  radius[0] = 1;
  radius[1] = 1;
 
  itk::NeighborhoodIterator<ImageType> iterator(radius, image,region);
 
 
  while(!iterator.IsAtEnd())
    {
    // Set the current pixel to white
    iterator.SetCenterPixel(255);
 
    for(unsigned int i = 0; i < 9; i++)
      {
      ImageType::IndexType index = iterator.GetIndex(i);
      std::cout << index[0] << " " << index[1] << std::endl;
 
      bool IsInBounds;
      iterator.GetPixel(i, IsInBounds);
      if(IsInBounds)
        {
        iterator.SetPixel(i,255);
        }
      }
    ++iterator;
    }
 
  // Visualize
  typedef itk::ImageToVTKImageFilter<ImageType> ConnectorType;
  ConnectorType::Pointer connector = ConnectorType::New();
  connector->SetInput(image);
 
  vtkSmartPointer<vtkImageActor> actor =
    vtkSmartPointer<vtkImageActor>::New();
#if VTK_MAJOR_VERSION <= 5
  actor->SetInput(connector->GetOutput());
#else
  connector->Update();
  actor->GetMapper()->SetInputData(connector->GetOutput());
#endif
 
  vtkSmartPointer<vtkRenderWindow> renderWindow =
    vtkSmartPointer<vtkRenderWindow>::New();
 
  vtkSmartPointer<vtkRenderWindowInteractor> interactor =
    vtkSmartPointer<vtkRenderWindowInteractor>::New();
  interactor->SetRenderWindow(renderWindow);
 
  vtkSmartPointer<vtkRenderer> renderer =
    vtkSmartPointer<vtkRenderer>::New();
  renderWindow->AddRenderer(renderer);
 
  renderer->AddActor(actor);
  renderer->ResetCamera();
 
  renderWindow->Render();
 
  vtkSmartPointer<vtkInteractorStyleImage> style =
    vtkSmartPointer<vtkInteractorStyleImage>::New();
 
  interactor->SetInteractorStyle(style);
 
  interactor->Start();
 
  return EXIT_SUCCESS;
}

CMakeLists.txt

cmake_minimum_required(VERSION 2.8)
 
project(NeighborhoodIterator)
 
find_package(ITK REQUIRED)
include(${ITK_USE_FILE})
if (ITKVtkGlue_LOADED)
  find_package(VTK REQUIRED)
  include(${VTK_USE_FILE})
else()
  find_package(ItkVtkGlue REQUIRED)
  include(${ItkVtkGlue_USE_FILE})
  set(Glue ItkVtkGlue)
endif()
 
add_executable(NeighborhoodIterator MACOSX_BUNDLE NeighborhoodIterator.cxx)
target_link_libraries(NeighborhoodIterator
  ${Glue}  ${VTK_LIBRARIES} ${ITK_LIBRARIES})

Download and Build NeighborhoodIterator

Click here to download NeighborhoodIterator. and its CMakeLists.txt file. Once the tarball NeighborhoodIterator.tar has been downloaded and extracted,

cd NeighborhoodIterator/build

If ITK is installed:

cmake ..

If ITK is not installed but compiled on your system, you will need to specify the path to your ITK build:

cmake -DITK_DIR:PATH=/home/me/itk_build ..

Build the project,

make

and run it:

./NeighborhoodIterator

WINDOWS USERS PLEASE NOTE: Be sure to add the VTK and ITK bin directories to your path. This will resolve the VTK and ITK dll's at run time.

Building All of the Examples

Many of the examples in the ITK Wiki Examples Collection require VTK. You can build all of the the examples by following these instructions. If you are a new VTK user, you may want to try the Superbuild which will build a proper ITK and VTK.

ItkVtkGlue

ITK >= 4

For examples that use QuickView (which depends on VTK), you must have built ITK with Module_ITKVtkGlue=ON.

ITK < 4

Some of the ITK Examples require VTK to display the images. If you download the entire ITK Wiki Examples Collection, the ItkVtkGlue directory will be included and configured. If you wish to just build a few examples, then you will need to download ItkVtkGlue and build it. When you run cmake it will ask you to specify the location of the ItkVtkGlue binary directory.

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