ITKv4 Summer Meeting
- Dates: June 27-29, 2011
- City: Chapel Hill, NC
- Location: Franklin Hotel
Travel / Hotel Information
The Meeting will take place at the Franklin Hotel.
Since the meeting starts at
we recommend people to arrange their hotel accommodation for the previous night!
- Use the room group 'ITKV4'
- Reservation line: 866.831.5999
- Ask for the "room block" reserved under 'ITKV4'
- The rate is $129 / Night
Registration Information
- Download Registration Form
- It is a fillable PDF form
- Fill it up please.
- Indicate the number of days that you are attending.
- Registration fee = ( NumberOfDays * $65 );
- Print it as a PDF file
- since otherwise the form is still modifiable
- Send the processed form back to Kitware
- email it at: admin at kitware dot com
Meeting Room
Meeting Agenda
- WARNING : THE AGENDA WAS REORGANIZED ON MAY 27th : PLEASE REVIEW
Must See Topics
- BETA Release
- GPU
- Modularization
- SimpleITK
- DICOM
- Registration Refactoring
- LevelSet Refactoring
Monday June 27th - A2D2 Summit
Monday Morning
- 8:30 am Welcome: Terry Yoo
- 8:50 am State of the Toolkit: Hans Johnson [[1]] [[2]]
- 9:10 am Procedures for integrating A2D2 contributions (Bill/Luis)
- 9:30 am Split in to Focus Groups
- Group1 : Microscopy
- Group2 : Clinical Applications
- Group3 : Video
- Group4 : Data and Web-based Applications
- 10:00 Break
- 10:30 am Working Groups (continuation)
- Group1 : Microscopy
- Group2 : Clinical Applications
- Group3 : Video
- Group4 : Data and Web-based Applications
- 12:00 pm Lunch
Monday Afternoon
- 1:00 pm Plenary: Group 1 : 20min presentation + discussion
- 2:00 pm Plenary: Group 2 : 20min presentation + discussion Group 2 notes
- 2:45 pm Break
- 3:15 pm Plenary: Group 3 : 20min presentation + discussion
- 4:00 pm Plenary: Group 4 : 20min presentation + discussion
- 4:45 pm Adjourn
Group Details
Group 1: Microscopy and Histology
- Ross Whitaker (designated speaker), Kris Zygmunt Fast Nonlocal Algorithms for Denoising Microscopy, MRI, and Ultrasound Images Using Nonparametric Neighborhood Statistics. Pre-Meeting Document
- Marc Niethammer Adding Deconvolution Algorithms to ITK Pre-Meeting Document
- Raghu Machiraju A Comprehensive Workflow for Robust Characterization of Microstructure for Cancer Studies
- Raghu Machiraju A Comprehensive Workflow for Large Histology Segmentation and Visualization
Group 2: Clinical Applications and CADs
- Thomas Fletcher (designated speaker) ITK Algorithms for Analyzing Time-Varying Shape with Application to Longitudinal Heart Modeling
- Ricardo Avila Fostering Open Science for Lung Cancer Lesion Sizing
- Nikos Chrisochoides 3D Real-Time Physics-Based Non-Rigid Registration for Image Guided Neurosurgery
Group 3: Video
- Amitha Perera and Patrick Reynolds (designated speakers) ITKExtensions for Video Processing Pre-Meeting Document
- Kevin Cleary Real-Time Image Capture for ITK through a Video Grabber
- John Galeotti Methods in Medical Image Analysis: An ITK-Based Course with Deliverable Algorithms that extends and evaluates ITK while broadening its developer base
Group 4: Data and Web-based Applications
- Sean Megason (designated speaker) SCORE++: Crowd source data, automatic segmentation and ground truth for ITK4
- Marcel Prastawa SCORE: Systematic Comparison through Objective Rating and Evaluation
- Ziv Yaniv Framework for automated parameter tuning of ITK registration pipelines
Presentation
Working Groups Tasks
- Each PI or representative will share a brief summary (max 5min) of their proposal with the other members of the group.
- Things to Discuss:
- How the A2D2s will advance the subject under consideration.
- Find possible overlaps and similarities between the A2D2s - solve them.
- Decide how the software will be distributed. (e.g. ITK module, ITK classes, independent software, IJ, etc...)
- List all the new classes/modules that will be contributed to ITK
- Discuss the design, architecture, and dependencies
- List ITKv4 features that you might need to use (e.g. GPU? Multi-thread? Streaming?)
- Discuss how each member of the group can help/assist each other
- Come-up with a plan of action and time-line
- Combine slides into a single presentation showing all the points that were discussed
Plenary Sessions
- Designated speaker will present
- Each of the other members should be available to anser questions and/or provide additional explanation
- Discuss possible problems and challenges
Dinner
Arrival Group Dinner
- Hackfest at Kitware NC Office (KRS)
Suite G-4
101 East Weaver St
Carrboro, North Carolina
27510 USA
518-371-3971 (voice/fax)
http://www.kitware.com/company/NC_mapsdirections.html
This is at walking distance from the Franklin Hotel.
- Date: Monday June 27th
- Time: 6pm-10pm
Terry, Bill, Stephen, Luis, Nick, Hans, Bill(ret), Arnaud, Cory
Tuesday June 28th
Tuesday Morning
- 8:30 am Welcome, Questions, Concerns
- 9:00 am Working Groups
- Group 1 ITK Revise / Refactor
- Group 3 GPU and Multithreading
- 10:30 am Break
- 11:00 am Working Groups
- Group 2 DICOM
- Group 4 Simplify
- 12:30 pm Lunch
Tuesday Afternoon
- 1:30 pm Plenary Session: Revise
- 2:30 pm Plenary Session: Simplify
- 3:00 pm Break
- 3:30 pm Plenary Session: GPU & Multithreading
- 4:30 pm DICOM
- 5:30 pm Adjourn
Dinner
Wednesday June 29th
Wednesday Morning
- 8:30 am Welcome, Questions, Concerns
- 8:35 am Integration (Slicer/Wiki Examples/OTB/ImageJ/ICY/OME/V3D) (Bill Lorensen / Luis Ibanez)
- 9:00 am Who is doing What ? - Action Items (Hans Johnson)
- 9:30 am Code Revisions (Jim Miller)
- 10:00 am Break
- 10:30 am Migration Guide (Gabe Hart / Dave Cole)
- 11:00 am Road Ahead (What's Next ?) (Terry Yoo)
Wednesday Afternoon
- 1:00 pm Testing Data (Patric Reynolds / Bill Hoffman)
- 1:30 pm Modularization (Bill Hoffman)
- 2:00 pm Doxygen Documentation (Arnaud Gelas) File:ITKv4-Doxygen.ppt
- 2:30 pm Break
- 3:00 pm Hack / Work / Hack More
- 5:00 pm Adjourn
Dinner
- GROUP DINNER for Survivors
- Carolina Brewery.
- Register in the haptic pad with mechanical stylus
Attendees
Please add your name to the list below if you are planning to attend.
Kitware
- Luis Ibanez
- Bill Hoffman
- Stephen Aylward
- David Cole
- Marcus Hanwell
- Xiaoxiao Liu (Lesion Sizing Toolkit)
- Andinet Enquobahrie (A2D2 Registration)
- Michel Audette (A2D2 Meshes)
- Amitha Perera (A2D2 Video)
- Gabe Hart (A2D2 Video / Simple ITK)
- Patrick Reynolds (A2D2 Video/SCORE/SCORE++)
- Brad Davis
- Mike Grauer (SCORE/SCORE++/A2D2 Registration)
- Jean-Christophe Fillion-Robin
University of Iowa
- Vincent Magnotta
- Hans Johnson
University of Pennsylvania
- Brian Avants
- James C. Gee
- Nick Tustison
Harvard University
- Sean Megason
- Arnaud Gelas
- Won-Ki Jeong (SEAS)
The Ohio State University
- Raghu Machiraju
- Kun Huang
- Zhi Han
College of William and Mary
- Nikos Chrisochoides
- Dr. Kot
- Dr. Liu
University of Utah
- Ross Whitaker
- Marcel Prastawa
- Josh Cates
- Kris Zygmunt
Cosmo Software
- Drew Wasem
- Ashish Sharma
- Alex Gouaillard [A*STAR] (over the phone / internet)
GE
Mayo Clinic
University of North Carolina
- Cory Quammen
- Marc Niethammer
National Library of Medicine
- Terry Yoo
- Bradley Lowekamp
- Jesus Caban
Georgetown University / CNMC
Noware
Bioscan
Attendance Matrix
Name |
Monday June 27 |
Tuesday June 28 |
Wednesday June 29
|
Luis Ibanez |
X |
X |
X
|
Bill Hoffman |
|
|
|
Stephen Aylward |
|
|
|
David Cole |
|
|
|
Marcus Hanwell |
X |
X |
X
|
Xiaoxiao Liu |
|
|
|
Andinet Enquobahrie |
|
|
|
Michel Audette |
|
|
|
Amitha Perera |
|
|
|
Gabe Hart |
|
|
|
Patrick Reynolds |
|
|
|
Brad Davis |
|
|
|
Vincent Magnotta |
|
x |
X
|
Hans Johnson |
x |
X |
X
|
Brian Avants |
|
|
|
James C. Gee |
|
|
|
Nick Tustison |
x |
x |
x
|
Sean Megason |
x |
x |
x
|
Arnaud Gelas |
x |
x |
x
|
Won-Ki Jeong |
X |
X |
X
|
Raghu Machiraju |
x |
x |
x
|
Kun Huang |
|
|
|
Zhi Han |
|
|
|
Nikos Chrisochoides |
|
|
|
Dr. Kot |
|
|
|
Dr. Liu |
|
|
|
Ross Whitaker |
|
|
|
Drew Wasem |
X |
X |
X
|
Ashish sharma |
X |
X |
X
|
Alex Gouaillard (remote) |
|
|
|
Jim Miller |
X |
X |
X
|
Dirk Padfield |
X |
X |
X
|
Dan Blezek |
X |
X |
X
|
Cory Quammen |
|
|
|
Marc Niethammer |
|
|
|
Terry Yoo |
|
|
|
Bradley Lowekamp |
|
|
|
Jesus Caban |
|
|
|
Ziv Yaniv |
X |
X |
|
Bill Lorensen |
X |
X |
X
|
Marcel Prastawa |
X |
|
|
Josh Cates |
X |
X |
|
Kris Zygmunt |
X |
X |
X
|
Jean-Christophe Fillion-Robin |
X |
|
|