ITK Release 3.6 Changed From Previous

This release covers the period September 23, 2007 through April 13, 2008

Changes in this Release

CMakeLists.txt
ENH: Updating ITK minor version number to "6" in preparation to the release of ITK 3.6.
ENH: Deal with policy framework in CMake from Brad.
ENH: updated baseline images to account for correct sparse field level set surface interpolation. Added ITK_USE_DEPRECATED_LEVELSET_INTERPOLATION CMake compile-time flag to switch back to old interpolation, for backward compatibility

ENH: all CMakeOutput.log and CMakeError.log files now are created in ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}.
COMP: Some temporary cxx flag checks to see how different compilers handle invalid flags.
BUG: 6267 conditionalised compiler flags to support gcc 4.2 on Mac OS X
ENH: Provides support for libXML2. If itk_use_libxml2 is enabled, itklibxml2 is downloaded and installed.
ENH: Enabling the correct use of the OrientedImage orientation by default.
ENH: add rough CPack configuration, and fix some subprojects to enable CPack support for ITK
COMP: Enabling ITK_LEGACY_SILENT to ON by default.
ENH: Moving minor version number to 5, to iniciate next development cycle.

CTestConfig.cmake
BUG: Try to fix trigger site.
ENH: Adding this file to enable new-style ctest scripts.

Copyright.txt
ENH: Changing the license to the OSI-approved BSD license.

GettingStarted.txt

ITKConfig.cmake.in
ENH: Exposes the use of libxml2
ENH: revert previous patch, and resurect ITK_SOURCE_DIR

itkConfigure.h.in
STYLE: This file was missing the copyright notice header.
ENH: updated baseline images to account for correct sparse field level set surface interpolation. Added ITK_USE_DEPRECATED_LEVELSET_INTERPOLATION CMake compile-time flag to switch back to old interpolation, for backward compatibility

itkGenerateITKConfig.cmake

itkIncludeDirectories.cmake
ENH: Exposes the use of libxml2

CMake/CTestCustom.ctest.in
ENH: Increase limit on number of warnings.
COMP: trying to suppress warnings on Mac.

CMake/CheckBigBitfield.cmake
ENH: all CMakeOutput.log and CMakeError.log files now are created in ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}.

CMake/CheckCPPDirective.cmake
ENH: all CMakeOutput.log and CMakeError.log files now are created in ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}.

CMake/InsightValgrind.supp
COMP: trying to suppress a bogus leak in libdl
COMP: suppress some dl conditionals.

CMake/RemoveTemporaryFiles.cmake.in
ENH: A cmake script to remove temporary files from the build tree.

CMake/TestNO_ICC_IDYNAMIC_NEEDED.cmake
ENH: all CMakeOutput.log and CMakeError.log files now are created in ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}.

CMake/TestQnanhibit.cmake
ENH: all CMakeOutput.log and CMakeError.log files now are created in ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}.

CMake/itkCheckCXXAcceptsFlags.cmake
COMP: Remove file checking logic. It was not portable across cmake2.4 patches.
ENH: continuing to refine this macro. It will execute if the macro has changed since the last time CMakeOutput.log was changed.

CMake/itkSampleBuildTest.cmake.in
ENH: More options from the cache.
ENH: A sample ctest script for dashboard submissions.

CMake/itkTestObjCxxCompiler.mm
BUG: Remove (intentional) compilation errors that were commited to CVS by mistake.

Code/Algorithms/itkAutomaticTopologyMeshSource
BUG: Hashing of points should be limited to the coordinate part of the point.

Code/Algorithms/itkBalloonForceFilter

Code/Algorithms/itkBayesianClassifierImageFilter

Code/Algorithms/itkBinaryMask3DMeshSource

Code/Algorithms/itkBinaryThinningImageFilter

Code/Algorithms/itkBioCellularAggregate

Code/Algorithms/itkCannySegmentationLevelSetImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/Algorithms/itkConnectedRegionsMeshFilter
BUG: Missing function implementation and REALLY bad style - only fixed some of style

Code/Algorithms/itkConnectedRegionsMeshFilter

Code/Algorithms/itkCurvatureFlowFunction
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.

Code/Algorithms/itkCurvesLevelSetImageFilter
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.

Code/Algorithms/itkDeformableMesh3DFilter

Code/Algorithms/itkDeformableSimplexMesh3DGradientConstraintForceFilter

Code/Algorithms/itkFEMRegistrationFilter

Code/Algorithms/itkFastMarchingImageFilter

Code/Algorithms/itkHistogramImageToImageMetr

Code/Algorithms/itkImageMomentsCalculator

Code/Algorithms/itkImagePCAShapeModelEstimator

Code/Algorithms/itkImageRegistrationMethod
STYLE: Adding more documentation to the StartOptimization() method.

Code/Algorithms/itkImageRegistrationMethod
BUG: The metric needs the number of threads prior to the call to it's Initialize() method.

Code/Algorithms/itkImageToImageMetric

Code/Algorithms/itkImageToImageMetr

Code/Algorithms/itkIsoContourDistanceImageFilter

Code/Algorithms/itkIsoContourDistanceImageFilter
COMP: warning unused parameter.

Code/Algorithms/itkKLMRegionGrowImageFilter

Code/Algorithms/itkKappaStatisticImageToImageMetric

Code/Algorithms/itkKappaStatisticImageToImageMetr

Code/Algorithms/itkLaplacianSegmentationLevelSetImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/Algorithms/itkLevelSetNeighborhoodExtractor

Code/Algorithms/itkMRFImageFilter

Code/Algorithms/itkMRIBiasFieldCorrectionFilter

Code/Algorithms/itkMatchCardinalityImageToImageMetric

Code/Algorithms/itkMatchCardinalityImageToImageMetr

Code/Algorithms/itkMattesMutualInformationImageToImageMetric

Code/Algorithms/itkMattesMutualInformationImageToImageMetr
BUG: UseCachingOfBSplineWeights was uninitialized. Detected by valgrind.
BUG: undefined variable sampleOK if transform is not a bspline. Detected by valgrind.
COMP: wrong declaration of precomputedWeight variable.
COMP: Borland warning.

Code/Algorithms/itkMeanReciprocalSquareDifferenceImageToImageMetric

Code/Algorithms/itkMeanReciprocalSquareDifferenceImageToImageMetr

Code/Algorithms/itkMeanReciprocalSquareDifferencePointSetToImageMetric

Code/Algorithms/itkMeanReciprocalSquareDifferencePointSetToImageMetr

Code/Algorithms/itkMeanSquareRegistrationFunction

Code/Algorithms/itkMeanSquaresImageToImageMetric

Code/Algorithms/itkMeanSquaresImageToImageMetr
BUG: redundant type.

Code/Algorithms/itkMeanSquaresPointSetToImageMetric

Code/Algorithms/itkMeanSquaresPointSetToImageMetr

Code/Algorithms/itkMultiResolutionImageRegistrationMethod

Code/Algorithms/itkMultiResolutionImageRegistrationMethod
COMP: shadowed type warning.

Code/Algorithms/itkMultiResolutionPyramidImageFilter

Code/Algorithms/itkMutualInformationImageToImageMetric

Code/Algorithms/itkMutualInformationImageToImageMetr

Code/Algorithms/itkNormalizedCorrelationImageToImageMetric

Code/Algorithms/itkNormalizedCorrelationImageToImageMetr

Code/Algorithms/itkNormalizedCorrelationPointSetToImageMetric

Code/Algorithms/itkNormalizedCorrelationPointSetToImageMetr

Code/Algorithms/itkRGBGibbsPriorFilter

Code/Algorithms/itkRegularSphereMeshSource
BUG: nested for loop variable.

Code/Algorithms/itkSegmentationLevelSetImageFilter
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.

Code/Algorithms/itkShapePriorSegmentationLevelSetFunction
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.

Code/Algorithms/itkSphereMeshSource

Code/Algorithms/itkStructHashFunction

Code/Algorithms/itkVoronoiDiagram2DGenerator
COMP: warning about possibly uninitialized variables.

Code/Algorithms/itkVoronoiSegmentationImageFilterBase

Code/Algorithms/itkWatershedSegmenter

Code/BasicFilters/itkAbsImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkAbsoluteValueDifferenceImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkAccumulateImageFilter
STYLE: some more minor doc. Clearly mark filters that are not multithread (booh), and those that are (hooray)

Code/BasicFilters/itkAcosImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkAdaptiveHistogramEqualizationImageFilter

Code/BasicFilters/itkAddImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkAndImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkAnisotropicDiffusionFunction

Code/BasicFilters/itkAsinImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkAtan2ImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkAtanImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkBSplineDecompositionImageFilter
BUG: Use of itk:: in itk namespace is an error

Code/BasicFilters/itkBSplineInterpolateImageFunction
BUG: Use of itk:: in itk namespace is an error

Code/BasicFilters/itkBSplineInterpolateImageFunction
ENH: Missing to add new member variable m_UseImageDirection in PrintSelf() method.

Code/BasicFilters/itkBSplineResampleImageFunction
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkBinaryDilateImageFilter
COMP: warnings about shadowed variables.

Code/BasicFilters/itkBinaryErodeImageFilter
COMP: warnings about shadowed variables.

Code/BasicFilters/itkBinaryMagnitudeImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkBinaryProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/BasicFilters/itkBinaryThresholdProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/BasicFilters/itkBinomialBlurImageFilter

Code/BasicFilters/itkBoundedReciprocalImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkCannyEdgeDetectionImageFilter

Code/BasicFilters/itkChangeInformationImageFilter
BUG: Was not computing center of oriented images properly. Now uses TransformContinuousIndexToPhysicalPoint to compute center.

Code/BasicFilters/itkChangeLabelImageFilter

Code/BasicFilters/itkComplexToImaginaryImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkComplexToModulusImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkComplexToPhaseImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkComplexToRealImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkCompose2DCovariantVectorImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkCompose2DVectorImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkCompose3DCovariantVectorImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkCompose3DVectorImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkComposeRGBImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkConfidenceConnectedImageFilter

Code/BasicFilters/itkConnectedComponentImageFilter
STYLE: some more minor doc. Clearly mark filters that are not multithread (booh), and those that are (hooray)

Code/BasicFilters/itkConstrainedValueAdditionImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkConstrainedValueDifferenceImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkContourDirectedMeanDistanceImageFilter

Code/BasicFilters/itkContourMeanDistanceImageFilter

Code/BasicFilters/itkCosImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkCurvatureNDAnisotropicDiffusionFunction
STYLE: BUG#5333 correct citation

Code/BasicFilters/itkDanielssonDistanceMapImageFilter
BUG: 2924. Filter crashes with images with size=1 on on dimension, Changes offsets to 0, if for dimensions <= 1. Also additional check for dimension = 1 in main loop.

Code/BasicFilters/itkDirectedHausdorffDistanceImageFilter

Code/BasicFilters/itkDivideImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkDoubleThresholdImageFilter

Code/BasicFilters/itkEdgePotentialImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkEigenAnalysis2DImageFilter
BUG: 0005803. Class has itkNewMacro, but no itkTypeMacro. Added itkTypeMacro.

Code/BasicFilters/itkEigenAnalysis2DImageFilter

Code/BasicFilters/itkErodeObjectMorphologyImageFilter
STYLE: Extended API to be consistent with BinaryErodeImageFilter

Code/BasicFilters/itkExpImageFilter
COMP: Turn optimizations back to default.
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkExpNegativeImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkExpandImageFilter

Code/BasicFilters/itkFlipImageFilter
COMP: Removed warnings for unused variables.

Code/BasicFilters/itkGetAverageSliceImageFilter
STYLE: add ref to filter

Code/BasicFilters/itkGradientImageFilter

Code/BasicFilters/itkGradientImageToBloxBoundaryPointImageFilter

Code/BasicFilters/itkGradientMagnitudeRecursiveGaussianImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkGradientNDAnisotropicDiffusionFunction

Code/BasicFilters/itkGradientRecursiveGaussianImageFilter
COMP: warnings and style.
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkGradientRecursiveGaussianImageFilter

ENH: Missing to add new member variable m_UseImageDirection in PrintSelf() method.

Code/BasicFilters/itkGradientToMagnitudeImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkGrayscaleConnectedClosingImageFilter

Code/BasicFilters/itkGrayscaleConnectedOpeningImageFilter

Code/BasicFilters/itkGrayscaleFillholeImageFilter

Code/BasicFilters/itkGrayscaleGrindPeakImageFilter

Code/BasicFilters/itkHConcaveImageFilter

Code/BasicFilters/itkHConvexImageFilter

Code/BasicFilters/itkHMaximaImageFilter

Code/BasicFilters/itkHMinimaImageFilter

Code/BasicFilters/itkHausdorffDistanceImageFilter

Code/BasicFilters/itkHessian3DToVesselnessMeasureImageFilter
STYLE: Fix doxygen typesetting.

Code/BasicFilters/itkHessian3DToVesselnessMeasureImageFilter

Code/BasicFilters/itkHessianRecursiveGaussianImageFilter
BUG: 0005803. Class has itkNewMacro, but no itkTypeMacro. Added itkTypeMacro.

Code/BasicFilters/itkHessianRecursiveGaussianImageFilter

Code/BasicFilters/itkIntensityWindowingImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkInverseDeformationFieldImageFilter

Code/BasicFilters/itkInvertIntensityImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkJoinSeriesImageFilter

Code/BasicFilters/itkLabelStatisticsImageFilter

Code/BasicFilters/itkLaplacianRecursiveGaussianImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkLevelSetFunctionWithRefitTerm
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.

Code/BasicFilters/itkLog10ImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkLogImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkMaskImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkMaskNegatedImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkMatrixIndexSelectionImageFilter
BUG: 0005803. Class has itkNewMacro, but no itkTypeMacro. Added itkTypeMacro.

Code/BasicFilters/itkMaximumImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkMaximumProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/BasicFilters/itkMeanProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/BasicFilters/itkMedianProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/BasicFilters/itkMinimumImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkMinimumProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/BasicFilters/itkModulusImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkMultiplyImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkNarrowBandImageFilterBase

Code/BasicFilters/itkNaryAddImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkNaryMaximumImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkNeighborhoodConnectedImageFilter
STYLE: some more minor doc. Clearly mark filters that are not multithread (booh), and those that are (hooray)

Code/BasicFilters/itkNormalVectorDiffusionFunction
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.

Code/BasicFilters/itkNotImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkOrImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkOrientImageFilter

Code/BasicFilters/itkParallelSparseFieldLevelSetImageFilter
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.

Code/BasicFilters/itkParallelSparseFieldLevelSetImageFilter
BUG: fixed a bug in recent anisotropic level sets code that caused tests to fail even when the level set fudge factor was preserved. Now all discrepancies are caused by the fudge factor, which will be removed soon.

Code/BasicFilters/itkPermuteAxesImageFilter

Code/BasicFilters/itkPolylineMask2DImageFilter

Code/BasicFilters/itkPolylineMaskImageFilter

Code/BasicFilters/itkProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/BasicFilters/itkRGBToLuminanceImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkRandomImageSource
STYLE: various style issues.

Code/BasicFilters/itkRandomImageSource
BUG: [6216] Changed random generator seed from unsigned long to unsigned int.

Code/BasicFilters/itkReconstructionByDilationImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkReconstructionByErosionImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkReconstructionImageFilter
COMP: warnings about shadowed variables.

Code/BasicFilters/itkRelabelComponentImageFilter
STYLE: some more minor doc. Clearly mark filters that are not multithread (booh), and those that are (hooray)

Code/BasicFilters/itkResampleImageFilter
STYLE: Line length

Code/BasicFilters/itkResampleImageFilter
BUG: Explicit use of itk:: in itk namespace implies existence of the itk::itk:: namespace

Code/BasicFilters/itkRescaleIntensityImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkScalarAnisotropicDiffusionFunction

Code/BasicFilters/itkSignedMaurerDistanceMapImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkSignedMaurerDistanceMapImageFilter

Code/BasicFilters/itkSimilarityIndexImageFilter

Code/BasicFilters/itkSinImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkSmoothingRecursiveGaussianImageFilter
BUG: rutime information support was not there

Code/BasicFilters/itkSmoothingRecursiveGaussianImageFilter
BUG: output regions are not updated correctly when the input region is modified bitween 2 updates

Code/BasicFilters/itkSobelEdgeDetectionImageFilter

Code/BasicFilters/itkSparseFieldFourthOrderLevelSetImageFilter
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.

Code/BasicFilters/itkSparseFieldLevelSetImageFilter
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.

Code/BasicFilters/itkSparseFieldLevelSetImageFilter
ENH: updated baseline images to account for correct sparse field level set surface interpolation. Added ITK_USE_DEPRECATED_LEVELSET_INTERPOLATION CMake compile-time flag to switch back to old interpolation, for backward compatibility
BUG: Temporarily reintroducing fudge factor to investigate dashboard tests failing
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.

Code/BasicFilters/itkSpatialObjectToImageFilter
BUG: Now respects an oriented image's Directions - also fixed style

Code/BasicFilters/itkSpatialObjectToImageStatisticsCalculator

Code/BasicFilters/itkSpatialObjectToPointSetFilter
COMP: Borland warning.

Code/BasicFilters/itkSqrtImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkSquareImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkSquaredDifferenceImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkStandardDeviationProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/BasicFilters/itkSubtractImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkSumProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/BasicFilters/itkSymmetricEigenAnalysisImageFilter
BUG: 0005803. Class has itkNewMacro, but no itkTypeMacro. Added itkTypeMacro.

Code/BasicFilters/itkTanImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkTensorFractionalAnisotropyImageFilter
BUG: 0005803. Class has itkNewMacro, but no itkTypeMacro. Added itkTypeMacro.

Code/BasicFilters/itkTensorRelativeAnisotropyImageFilter
BUG: 0005803. Class has itkNewMacro, but no itkTypeMacro. Added itkTypeMacro.

Code/BasicFilters/itkTernaryAddImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkTernaryMagnitudeImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkTernaryMagnitudeSquaredImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkThresholdImageFilter
STYLE: some more minor doc. Clearly mark filters that are not multithread (booh), and those that are (hooray)

Code/BasicFilters/itkThresholdImageFilter

Code/BasicFilters/itkTileImageFilter

Code/BasicFilters/itkTriangleMeshToBinaryImageFilter
COMP: warnings and style.

Code/BasicFilters/itkTriangleMeshToBinaryImageFilter

COMP: warnings and style.

Code/BasicFilters/itkTriangleMeshToSimplexMeshFilter
COMP: warnings and style.

Code/BasicFilters/itkTwoOutputExampleImageFilter

Code/BasicFilters/itkVTKImageExport
ENH: Do not seg fault when input is missing

Code/BasicFilters/itkVTKImageExportBase
ENH: Do not seg fault when input is missing

Code/BasicFilters/itkVTKImageImport
ENH: was missing signed char

Code/BasicFilters/itkVectorCastImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkVectorConfidenceConnectedImageFilter

Code/BasicFilters/itkVectorExpandImageFilter

Code/BasicFilters/itkVectorIndexSelectionCastImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkVectorRescaleIntensityImageFilter

Code/BasicFilters/itkVotingBinaryHoleFillingImageFilter
COMP: Fixed warning on type mismatch in an assignment statement

Code/BasicFilters/itkWeightedAddImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/BasicFilters/itkXorImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/Common/CMakeLists.txt
COMP:add malloc library for IRIX platforms
COMP: removed empty C++ files from library.
COMP: Link a shared library with a static library on 64 bit.

Code/Common/itkAddImageAdaptor

Code/Common/itkAnnulusOperator
COMP: warnings about shadowed variables and types.

Code/Common/itkBSplineDeformableTransform
BUG: Now correctly handles directions

Code/Common/itkBSplineDeformableTransform
BUG: in ::SetParameters not all parameters were being passed.
BUG: Now correctly handles directions
BUG: 6123. Internal parameters vector is null at construction, causing a crash when GetParameters() is called. Set internal parameters to point to an existing internal parameters buffer at construction time. Added an exception if the parameters vector is null when GetParameters() is called.

Code/Common/itkBSplineInterpolationWeightFunction

Code/Common/itkBoundingBox
BUG: 0005803. Class has itkNewMacro, but no itkTypeMacro. Added itkTypeMacro.

Code/Common/itkCenteredAffineTransform
insight-users/2007-December/024516.html

Code/Common/itkCentralDifferenceImageFunction

Code/Common/itkChainCodePath
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkChainCodePath2D
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkChildTreeIterator
BUG: improper specification of Self.

Code/Common/itkConceptChecking

Code/Common/itkDataObject
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkDefaultDynamicMeshTraits
BUG: Hashing of points should be limited to the coordinate part of the point.

Code/Common/itkDefaultStaticMeshTraits
BUG: Hashing of points should be limited to the coordinate part of the point.

Code/Common/itkDerivativeOperator

Code/Common/itkElasticBodyReciprocalSplineKernelTransform
BUG: itkLegacyMacro was not used properly (misplaced ;). This resulted in incorrect deprecation warnings.

Code/Common/itkElasticBodyReciprocalSplineKernelTransform
BUG: compiler errors if ITK_LEGACY_REMOVE is set to ON.

Code/Common/itkElasticBodySplineKernelTransform
BUG: itkLegacyMacro was not used properly (misplaced ;). This resulted in incorrect deprecation warnings.

Code/Common/itkElasticBodySplineKernelTransform
BUG: compiler errors if ITK_LEGACY_REMOVE is set to ON.

Code/Common/itkEquivalencyTable
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkEuler3DTransform
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkFiniteDifferenceFunction
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.
COMP: better definition of PixelRealType

Code/Common/itkFiniteDifferenceFunction
BUG: fixed a bug in recent anisotropic level sets code that caused tests to fail even when the level set fudge factor was preserved. Now all discrepancies are caused by the fudge factor, which will be removed soon.

Code/Common/itkFiniteDifferenceImageFilter
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.

Code/Common/itkFiniteDifferenceSparseImageFilter
COMP: warnings about shadowed variables and types.

Code/Common/itkGaussianBlurImageFunction
COMP: warnings about shadowed variables and types.

Code/Common/itkImage
BUG: Now image adaptor's support directions
STYLE: Fixing coding style violations indicated by KWStyle.

Code/Common/itkImage
STYLE: Fixing coding style violations indicated by KWStyle.

Code/Common/itkImageAdaptor
BUG: Now image adaptor's support directions

Code/Common/itkImageAdaptor

Code/Common/itkImageBase

Code/Common/itkImageFunction
BUG: #6219. Misspelled method name.

Code/Common/itkImageRegionIterator
ENH: Removing unnecessary include of ImageRegionIteratorWithIndex.h.

Code/Common/itkImageToImageFilter

Code/Common/itkImageTransformHelper
BUG: 5637. ImageTransformHelper computations wrong for 1D.

Code/Common/itkImportImageContainer
BUG: ::Reserve was not adjusting size properly if the newly resuted size was less than the capacity. ENH: Added ::Capacity() to return capacity.

Code/Common/itkImportImageContainer
COMP: cast ImportPointer to void * for printing.

Code/Common/itkInOrderTreeIterator
COMP: operator= is no longer virtual. virtual operator= requires special processing by subclasses. In these classes, it was not needed. This should also resolve warnings about overriding virtual methods in a derived class. As an aside, there were no other virtual operator= methods in itk other than these.

Code/Common/itkIndex
COMP: Some version of Visual Studio do not properly round. This fix replaces assembler language with C++ code for the rounding.

Code/Common/itkKLMSegmentationBorder
BUG: 0006196. ITK has many 64 to 32 bit truncations.
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkKLMSegmentationRegion
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkKernelTransform
BUG: itkLegacyMacro was not used properly (misplaced ;). This resulted in incorrect deprecation warnings.

Code/Common/itkKernelTransform
BUG: compiler errors if ITK_LEGACY_REMOVE is set to ON.

Code/Common/itkLandmarkBasedTransformInitializer

Code/Common/itkLeafTreeIterator
COMP: operator= is no longer virtual. virtual operator= requires special processing by subclasses. In these classes, it was not needed. This should also resolve warnings about overriding virtual methods in a derived class. As an aside, there were no other virtual operator= methods in itk other than these.

Code/Common/itkLevelOrderTreeIterator
COMP: operator= is no longer virtual. virtual operator= requires special processing by subclasses. In these classes, it was not needed. This should also resolve warnings about overriding virtual methods in a derived class. As an aside, there were no other virtual operator= methods in itk other than these.

Code/Common/itkLevelSetFunction
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.

Code/Common/itkLevelSetFunction
BUG: fixed a bug in recent anisotropic level sets code that caused tests to fail even when the level set fudge factor was preserved. Now all discrepancies are caused by the fudge factor, which will be removed soon.

Code/Common/itkLightObject
BUG: Fix a possible race condition in SetReferenceCount(). Pointed by Julia Smith on user mailing list.

Code/Common/itkLinearInterpolateImageFunction

Code/Common/itkMacro
ENH: Added check of ITK_LEGACY_TEST definition to silence deprecation warnings in tests. Also corrected ITK_LEGACY_REMOVE implementation to not produce a stray semicolon.
BUG: compiler errors if ITK_LEGACY_REMOVE is set to ON.

Code/Common/itkMapContainer
COMP: Warning about shadowed variables.

Code/Common/itkMatrix
BUG: 6309. Inverse transform does not catch singular matrices. Added check for 0 determinant. Thorws exception if 0. This is caught by the transforms which return false for a singular matrix.

Code/Common/itkMatrixOffsetTransformBase
BUG: docs mention column-major order but describe row-major. Matrices are really row-major.

Code/Common/itkMaximumRatioDecisionRule
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkMersenneTwisterRandomVariateGenerator
COMP: suppress VS6 warning regarding unary minus and unsigned.

Code/Common/itkMesh
BUG: Hashing of points should be limited to the coordinate part of the point.

Code/Common/itkMetaDataObject
COMP: Remove compiler warning about missing return value for non void function.

Code/Common/itkMetaDataObjectBase

Code/Common/itkNthElementImageAdaptor
BUG: Now image adaptor's support directions

Code/Common/itkNumericTraits
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkNumericTraits

Code/Common/itkNumericTraitsVariableLengthVectorPixel

Code/Common/itkObjectFactoryBase
COMP: remove DynamicLoader::CloseLibrary(lib) for case when a lib is found, but does not have the symbol itkLoad. Not portable acorss all platforms.
COMP: use dylib extension for dynamic libs on MAC.
COMP: casting issues on windows.
COMP: still issues with GCC and maybe other platforms.
BUG: backout last changes.
BUG: Trying to debug ObjectFactory. There seems to be a problem with UnRegisterAllFactories().
BUG: 0005880. substr arguments were incorrect. The second argument is the count of the substring, not the position of the end of the string.

Code/Common/itkObjectFactoryBase
BUG: The ability to override classes with factories was not working. The main problem was the lack of a ->Register on created objects. Also, the search for overriding classes was limited to the first class in a factory. STYLE: various style issues in the itkObjectFactoryBase code. ENH: A new test to exercise the ObjectFactory code.

Code/Common/itkOffset

Code/Common/itkOneWayEquivalencyTable
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkOrientedImage
BUG: Now image adaptor's support directions

Code/Common/itkOrthogonallyCorrected2DParametricPa
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkOrthogonallyCorrected2DParametricPath
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkPhasedArray3DSpecialCoordinatesImage

BUG: temporarily added a dummy RotateArrayByDirectionCosines method.

Code/Common/itkPixelTraits
ENH: This file expects Macros to be defined but it was not including itkMacro.h.

Code/Common/itkPolygonCell
COMP: style.

Code/Common/itkPostOrderTreeIterator
COMP: operator= is no longer virtual. virtual operator= requires special processing by subclasses. In these classes, it was not needed. This should also resolve warnings about overriding virtual methods in a derived class. As an aside, there were no other virtual operator= methods in itk other than these.

Code/Common/itkProcessObject
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkProgressAccumulator
BUG: last checkin was incomplete.

Code/Common/itkProgressAccumulator
COMP: warnings about local vars hiding other vars.

Code/Common/itkRGBPixel
ENH: Added == and < operators so that RGBPixel can be used in a std::map

Code/Common/itkRigid3DPerspectiveTransform
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkScaleTransform
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkSegmentationLevelSetFunction
BUG: bug fix 6156. Support for isotropic and anisotropic image spacings has been added to all level sets functions and filters, including serial and parallel sparse field level sets and CurvatureFlowFunction. The new functionality can be activated with UseImageSpacingOn. A fudge factor used for surface interpolation in SparseFieldLevelSetImageFilter has been removed.

Code/Common/itkSimilarity2DTransform
BUG: 6076. Setting angle from a matrix faulty. If angle was negative, the ComputeMatrixParameters incorrectly set the VarAngle to the wrong sign.

Code/Common/itkSimilarity3DTransform
BUG: In SetMatrix, check for zero determinant before computing cube root.

Code/Common/itkSize

Code/Common/itkSpatialOrientationAdapter
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkSymmetricSecondRankTensor

Code/Common/itkTestMain
BUG: flawed logic for NumberOfPixelsTolerance.

Code/Common/itkTetrahedronCell
COMP: warnings about shadowed variables and types.

Code/Common/itkTextOutput
BUG: 0005803. Class has itkNewMacro, but no itkTypeMacro. Added itkTypeMacro.

Code/Common/itkThinPlateR2LogRSplineKernelTransform
BUG: itkLegacyMacro was not used properly (misplaced ;). This resulted in incorrect deprecation warnings.

Code/Common/itkThinPlateR2LogRSplineKernelTransform
BUG: compiler errors if ITK_LEGACY_REMOVE is set to ON.

Code/Common/itkThinPlateSplineKernelTransform
BUG: itkLegacyMacro was not used properly (misplaced ;). This resulted in incorrect deprecation warnings.

Code/Common/itkThinPlateSplineKernelTransform
BUG: compiler errors if ITK_LEGACY_REMOVE is set to ON.

Code/Common/itkTimeProbe

Code/Common/itkTimeProbesCollectorBase

Code/Common/itkTimeStamp
COMP: fixed problems with itkTimeStamp and pre-10.5 Mac systems
BUG: 6008 performance optimisation of itkTimeStamp for Windows and Mac OS, synced with vtkTimeStamp

Code/Common/itkTimeStamp
BUG: 6008 performance optimisation of itkTimeStamp for Windows and Mac OS, synced with vtkTimeStamp

Code/Common/itkTransform
BUG: 5291. Fixing documentation of GetInverse();.

Code/Common/itkTransform
ENH: Backing out the thread saefe transform class because we now replicate transforms per thread. As a result, the additional API in the thread safe transform is no longer necessary.

Code/Common/itkTranslationTransform

Code/Common/itkTreeIteratorBase
COMP: operator= is no longer virtual. virtual operator= requires special processing by subclasses. In these classes, it was not needed. This should also resolve warnings about overriding virtual methods in a derived class. As an aside, there were no other virtual operator= methods in itk other than these.

Code/Common/itkTriangleCell
COMP: warnings about shadowed variables and types.

Code/Common/itkVariableLengthVector
private/insight-developers/2008-January/009920.html

Code/Common/itkVariableSizeMatrix
BUG: 0005761. Replaced itkExceptionMacro with itkGenericExceptionMacro. Also added test to cover most of the code. Fixed some compile errors in untested code.

Code/Common/itkVariableSizeMatrix
ENH: better coverage. Removed commented out code.
BUG: 0005761. Replaced itkExceptionMacro with itkGenericExceptionMacro. Also added test to cover most of the code. Fixed some compile errors in untested code.

Code/Common/itkVectorContainer
BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/Common/itkVectorContainer
COMP: warnings about shadowed variables and types.

Code/Common/itkVersor

Code/Common/itkVersor
BUG: 6069. Versor was imncompatible with float type. In GetAngle, the two args to atan2 were of a different type. Added a cast to RealType for second argument.

Code/Common/itkVolumeSplineKernelTransform
BUG: itkLegacyMacro was not used properly (misplaced ;). This resulted in incorrect deprecation warnings.

Code/Common/itkVolumeSplineKernelTransform
BUG: compiler errors if ITK_LEGACY_REMOVE is set to ON.

Code/Common/itkWindows
BUG: 0005403. #undef WIN32_LEAN_AND_MEAN if it is already defined befroe #define.

Code/Common/itk_hash_map
COMP: Added missing forward declarations needed for friend declaration.

Code/Common/itk_hashtable
COMP: Added missing this-> for dependent-name member access.

Code/IO/CMakeLists.txt
BUG: 6196. Enable generation of warnings related to 64bits to 32bits truncations.
ENH: why is (the fairly large) itkTestDriver needed if BUILD_TESTING is off?

Code/IO/itkAnalyzeImageIO
ENH: Implemented changes discussed on 20080222 teleconference to make the .hdr and .img file format reading and writing more consistent. The nifti versions of .img and .hdr images are not written by default, but will be read properly. Requesting a write of .img or .hdr will result in using the Mayo-clinic compliant version of an Analyze7.5 file format.
COMP: fixed some 64 to 32 bit conversion warnings, for bug 6196
COMP: close opened files if there is a failure.

Code/IO/itkAnalyzeImageIO
STYLE: Turn C style coding into C++ style

Code/IO/itkAnalyzeImageIOFactory
STYLE: Turn C style coding into C++ style

Code/IO/itkArchetypeSeriesFileNames
COMP: Fixing warning: implicit conversion shortens 64-bit value into a 32-bit value.

Code/IO/itkBMPImageIO
STYLE: various style issues.

BUG: 0006196. ITK has many 64 to 32 bit truncations.

Code/IO/itkBMPImageIO

Code/IO/itkBioRadImageIO
COMP: Fixing warning: implicit conversion shortens 64-bit value into a 32-bit value.

Code/IO/itkBrains2HeaderBase
COMP: Fixing warning: implicit conversion shortens 64-bit value into a 32-bit value.

Code/IO/itkBrains2HeaderFactory
STYLE: Turn C style coding into C++ style

Code/IO/itkBrains2MaskImageIO
COMP: fixed some 64 to 32 bit conversion warnings, for bug 6196

Code/IO/itkConvertPixelBuffer

Code/IO/itkConvertPixelBuffer
STYLE: various style issues identified by KWStyle.

Code/IO/itkDICOMImageIO2
COMP: Fixing warning: implicit conversion shortens 64-bit value into a 32-bit value on MacOS.

Code/IO/itkDefaultConvertPixelTraits

Code/IO/itkGDCMImageIO
COMP: Fixing warning: implicit conversion shortens 64-bit value into a 32-bit value on MacOS.
BUG: When using the default SeriesWriter, the user did not explicitely set the 3rd coordinate position, there is no way to know where the image is in 3D. By default set it in the place Z=0. This fix the segfault on some win32 compiler
COMP: Why is my gcc not reporting this as an error...
ENH: Fix feature request: 0006138: Finding proper pixel type for DICOM is cumbersome
STYLE: fix typo

Code/IO/itkGDCMImageIO
STYLE: update doc

Code/IO/itkGE4ImageIO
COMP: close opened files if there is a failure.

Code/IO/itkGE4ImageIO
STYLE: Turn C style coding into C++ style

Code/IO/itkGE4ImageIOFactory
STYLE: Turn C style coding into C++ style

Code/IO/itkGE5ImageIO
COMP: fixed some 64 to 32 bit conversion warnings, for bug 6196
STYLE: Turn C style coding into C++ style
BUG: 0005951. Directions and origin were being computed incorrectly from the header information.
BUG: GE5 volumes reading in Anterior-to-Posterior swapped

Code/IO/itkGE5ImageIO
STYLE: Turn C style coding into C++ style

Code/IO/itkGE5ImageIOFactory
STYLE: Turn C style coding into C++ style

Code/IO/itkGEAdwImageIO
COMP: fixed some 64 to 32 bit conversion warnings, for bug 6196
STYLE: Turn C style coding into C++ style

Code/IO/itkGEAdwImageIO
STYLE: Turn C style coding into C++ style

Code/IO/itkGEAdwImageIOFactory
STYLE: Turn C style coding into C++ style

Code/IO/itkGiplImageIO
COMP: Fixing warning: implicit conversion shortens 64-bit value into a 32-bit value on MacOS.

Code/IO/itkIOCommon
ENH: Removing code that has been commented out since April 2003.

Code/IO/itkIOCommon
STYLE: Turn C style coding into C++ style

Code/IO/itkIPLCommonImageIO
COMP: some systems have problems copying the itkExceptionObject. catch should use a ref to ExceptionObject.
STYLE: Turn C style coding into C++ style

Code/IO/itkIPLCommonImageIO
STYLE: various style issues identified by KWStyle.

Code/IO/itkImageFileReader
BUG: #6046. ImageFilereader leaks in case of exceptions. Fixed by replacing heap allocation using new with std::vector<char>.

Code/IO/itkImageFileWriter
ENH: Enabling streaming IO

Code/IO/itkImageIOBase
ENH: Adding support for FixedArray<T,3> and FixedArray<T,4> PixelTypes.
BUG: Removing annoying debugging message.
BUG: Set methods were doing invalid pointer writes. Tests for upper bounds were incorrect.

Code/IO/itkImageIOBase
ENH: Adding support for writing matrices of 2x2, 3x3 and 4x4.

Code/IO/itkImageIOFactory
ENH: Implemented changes discussed on 20080222 teleconference to make the .hdr and .img file format reading and writing more consistent. The nifti versions of .img and .hdr images are not written by default, but will be read properly. Requesting a write of .img or .hdr will result in using the Mayo-clinic compliant version of an Analyze7.5 file format.

Code/IO/itkImageSeriesWriter

Code/IO/itkMetaImageIO
COMP: warning grafitti.
COMP: warnings about variable shadowing.
ENH: Remove debugging messages used to check the Direction cosines.

Code/IO/itkMvtSunf
STYLE: Turn C style coding into C++ style

Code/IO/itkNiftiImageIO
STYLE: various style issues.
ENH: Finished implementing modificaitons discussed on 20080222 teleconference to make the .hdr and .img file format reading and writing more consistent.
ENH: Implemented changes discussed on 20080222 teleconference to make the .hdr and .img file format reading and writing more consistent. The nifti versions of .img and .hdr images are not written by default, but will be read properly. Requesting a write of .img or .hdr will result in using the Mayo-clinic compliant version of an Analyze7.5 file format.
COMP: Fixing other implicit integer conversions.
STYLE: Added doc to CanReadFile.
COMP: warnings about variable shadowing.

Code/IO/itkNiftiImageIO
ENH: Finished implementing modificaitons discussed on 20080222 teleconference to make the .hdr and .img file format reading and writing more consistent.
ENH: Improved documentation. COMP: Removed unused (left over from a copy and paste) enumerations.
STYLE: Turn C style coding into C++ style

Code/IO/itkNiftiImageIOFactory
STYLE: Turn C style coding into C++ style

Code/IO/itkSiemensVisionImageIO
COMP: fixed some 64 to 32 bit conversion warnings, for bug 6196

Code/IO/itkSiemensVisionImageIO
STYLE: Turn C style coding into C++ style

Code/IO/itkSiemensVisionImageIOFactory
STYLE: Turn C style coding into C++ style

Code/IO/itkTIFFImageIO
STYLE: Fixing missing word on message of an itkExceptionMacro.
BUG: inappropriate use of long and unsigned long. On 64 bit systems, these may be 8 bytes long. The tif library does not read 8 byte fields. It defines uint32 and int32 to be int's on 64 bit systems.
BUG: 0006159. itkTIFFImageIO does not close opened file. Also, when the writer fails to write, it does so silently. Added m_InternalImage->Clean() calls after reading. Now throws an exception if the write cannot open the file.

Code/IO/itkVTKImageIO
BUG: 0006161. Precision of spacing and origin while reading an image. The spacing and origin were declared internally as float rather than double.

Code/Numerics/CMakeLists.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Code/Numerics/itkCumulativeGaussianCostFunction
BUG: 0005803. Class has itkNewMacro, but no itkTypeMacro. Added itkTypeMacro.

Code/Numerics/itkFRPROptimizer
ENH: Provides a regular step gradient option to match that of other gradient optimizer

Code/Numerics/itkLBFGSBOptimizer
ENH: Adding the vnl failure code value to the list of elements to print in PrintSelf().

Code/Numerics/itkLBFGSBOptimizer
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Code/Numerics/itkPowellOptimizer
COMP: Fix missing include when using the ITK_MANUAL_INSTANTIATION flag

Code/Numerics/itkSingleValuedVnlCostFunctionAdaptor
COMP: warnings about variable shadowing.

Code/Numerics/Attic/lbfgsb
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Code/Numerics/FEM/CMakeLists.txt

Code/Numerics/FEM/dsrc2c
COMP: the symbol timer_ was already defined in netlib. Made a unique symbol.

Code/Numerics/FEM/itkFEMElementBase
COMP: warnings about variable shadowing.

Code/Numerics/FEM/itkFEMImageMetricLoad
COMP: warnings about shadowed variables.

Code/Numerics/FEM/itkFEMLightObject
ENH: Added more information to input error messages.
COMP: added more descriptive failure messages. Also, some style fixes.

Code/Numerics/FEM/itkFEMLoadElementBase
COMP: warnings about variable shadowing.

Code/Numerics/FEM/itkFEMSolver
COMP: warnings about variable shadowing.

Code/Numerics/Statistics/d1ma

Code/Numerics/Statistics/itkDistanceToCentroidMembershipFunction
STYLE: Line lengths

Code/Numerics/Statistics/itkHistogram
COMP: warnings about shadowed variables.

Code/Numerics/Statistics/itkHistogramToEntropyImageFilter
BUG: 0005803. Class has itkNewMacro, but no itkTypeMacro. Added itkTypeMacro.

Code/Numerics/Statistics/itkHistogramToIntensityImageFilter
BUG: 0005803. Class has itkNewMacro, but no itkTypeMacro. Added itkTypeMacro.

Code/Numerics/Statistics/itkHistogramToLogProbabilityImageFilter
BUG: 0005803. Class has itkNewMacro, but no itkTypeMacro. Added itkTypeMacro.

Code/Numerics/Statistics/itkHistogramToProbabilityImageFilter
BUG: 0005803. Class has itkNewMacro, but no itkTypeMacro. Added itkTypeMacro.

Code/Numerics/Statistics/itkImageToCooccurrenceListAdaptor
COMP: warnings.

Code/Numerics/Statistics/itkImageToListGenerator
BUG: input and mask iterators must use the same region to produce valid result, but can have different buffered region. Using the buffered region of the mask image to initialize the mask iterator can lead to an invalid result.

Code/Numerics/Statistics/itkListSampleToHistogramFilter
STYLE: line length

Code/Numerics/Statistics/itkMahalanobisDistanceMembershipFunction
ENH: removing old vxl notation for dot product.

Code/Numerics/Statistics/itkVariableDimensionHistogram
COMP: Warning about shadowed variables.

Code/Patented/itkActiveShapeModelCalculator

Code/Review/itkBinaryMorphologicalClosingImageFilter
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.

Code/Review/Attic/itkBinaryProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.
ENH: preparing for transition to BasicFilters. ENH: Better exception handling. STYLE: changed old document handle.

Code/Review/Attic/itkBinaryThresholdProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/Review/itkConformalFlatteningMeshFilter
COMP: Borland warnings.

Code/Review/itkContourExtractor2DImageFilter
COMP: changed insight journal handle to new location.

Code/Review/itkContourExtractor2DImageFilter
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.

Code/Review/itkGeometricalQuadEdge
COMP: changed insight journal handle to new location.

Code/Review/itkGeometricalQuadEdge
BUG: failed to include its own header file.

Code/Review/itkLabelOverlayFunctor
ENH: Move OverlayFunctor in its own header so it can be used much easily in another class

Code/Review/itkLabelOverlayImageFilter
COMP: changed insight journal handle to new location.

Code/Review/itkLabelOverlayImageFilter

Code/Review/itkLabelToRGBFunctor
COMP: VS6 has strange restrictions on use of typename.

Code/Review/itkLabelToRGBImageFilter
COMP: VS6 has strange restrictions on use of typename.

Code/Review/itkMINC2ImageIO
COMP: Addressing warnings about conversions between signed and unsigned.
COMP: Fixing mismatch between signed and unsigned ints used to represent dimensions.
COMP: Fixing warning about unused Strides function argument.

Code/Review/itkMINC2ImageIO
COMP: Fixing API use of "int" and "unsigned ints".

Code/Review/itkMatlabTransformIO
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.

Code/Review/Attic/itkMaximumProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/Review/Attic/itkMeanProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/Review/Attic/itkMedianProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/Review/itkMemoryProbe

Code/Review/itkMemoryProbesCollectorBase
COMP: implement virtual destructors to remove compilation warning.

Code/Review/itkMemoryUsageObserver
COMP: forgot to set the new size of the array
ENH: Implementation of a memory usage observer for windows (with Windows Native API) and sun solaris
COMP: implement virtual destructors to remove compilation warning.

Code/Review/itkMemoryUsageObserver
ENH: Implementation of a memory usage observer for Mac OS X ( version >10.2 ) using the vmmap command
ENH: Implementation of a memory usage observer for windows (with Windows Native API) and sun solaris
COMP: disable mallinfo for sun platforms
COMP: implement virtual destructors to remove compilation warning.

Code/Review/Attic/itkMinimumProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/Review/itkMorphologicalWatershedFromMarkersImageFilter
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.

Code/Review/itkNeuralNetworkFileReader
COMP: changed insight journal handle to new location.

Code/Review/itkNeuralNetworkFileWriter
COMP: changed insight journal handle to new location.

Code/Review/Attic/itkOptBSplineDeformableTransform
ENH: Backing out the optimized b-spline deformable transform class because we now replicate transforms per thread. As a result, the additional API in the opt class is no longer necessary.

Code/Review/itkOptBSplineInterpolateImageFunction
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.
STYLE: Fixing coding style violations.

Code/Review/itkOptBSplineInterpolateImageFunction
STYLE: Wrong indentation
STYLE: Fixing several style violations.
ENH: Fixing PrintSelf() errors. Missing to print some ivars.

Code/Review/itkOptImageToImageMetric
BUG: Turn off UseAllPixels when the number of samples is set.
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.
STYLE: Fixing coding style violations.
BUG: Make sure m_ThreaderChunkSize is updated when m_NumberOfFixedImageSamples changes.
ENH: Changing from include of OptBSplineDeformableTransform to BSplineDeformableTransform

Code/Review/itkOptImageToImageMetr
BUG: Need to turn off the use of all pixels if the sample pixel indices are specified.
COMP: PrintType needed to properly print pixel type ivars.
ENH: Starting to add conditionals blocks for caching the weights of BSpline transforms.
ENH: Allows the user to limit metric samples to high-intensity pixels in the fixed image
BUG: Fix call to BSplineDeformableTransform with parameters on the stack. ENH: Remove some debug code.
STYLE: Fixing coding style violations.
ENH: Remove unneeded printout.
BUG: Make sure m_ThreaderChunkSize is updated when m_NumberOfFixedImageSamples changes.
ENH: Fixing PrintSelf() errors. Missing to print some ivars.
ENH: Removing deprecated call to SetNumberOfThreads() in the Transform.

Code/Review/itkOptLinearInterpolateImageFunction
STYLE: Fixing indentation of typedefs.
STYLE: Fixing coding style violations.

Code/Review/itkOptLinearInterpolateImageFunction

Code/Review/itkOptMatchCardinalityImageToImageMetric
STYLE: Fixing coding style violations.
ENH: Removing m_NumberOfThreads ivar that was commented out.

Code/Review/itkOptMatchCardinalityImageToImageMetr
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.
handle/1926/566 The parent class now has threading information, so MatchCardinalityImageToImageMetric needed to be updated to use the inherited m_NumberOfThreads.

Code/Review/itkOptMattesMutualInformationImageToImageMetric
COMP: shadowed type warning.
STYLE: Fixing coding style violations.

Code/Review/itkOptMattesMutualInformationImageToImageMetr
COMP: warnings about uninitialized variable.
STYLE: Fixing style problem with indentations of a long block of comments.
BUG: added new private var to PrintSelf. Should address a warning in the PrintSelf-Review Test.
BUG: Initialization of m_UseExplicitPDFDerivatives missing from the constructor.

STYLE: Fixing coding style violations.
BUG: Remove the use of some smart pointers internally to avoid calls to mutex locks. ENH: Avoid setting local transform pointer twice when threadID > 0
COMP: Added typenames to fix compile errrors.
BUG: Replace GetJacobian( pt, threadId) with GetJacobian( pt )
handle/1926/566

Code/Review/itkOptMeanSquaresImageToImageMetric
ENH: Removing unncessary include for itkOptBSplineInterpolateImageFunction.h.
BUG: Evaluate Jacobian at fixed image point (i.e. untransformed point).

Code/Review/itkOptMeanSquaresImageToImageMetr

STYLE: Fixing coding style violations.
BUG: Evaluate Jacobian at fixed image point (i.e. untransformed point).
COMP: Fix constness.
BUG: We can't use m_Transform if we aren't in threadID 0.
handle/1926/566

Code/Review/Attic/itkOptMutualInformationImageToImageMetric
handle/1926/566

Code/Review/Attic/itkOptMutualInformationImageToImageMetr
handle/1926/566

Code/Review/itkOptResampleImageFilter
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.
BUG: OptResampleImageFilter should include OptResampleImageFilter.txx

Code/Review/itkOptResampleImageFilter

STYLE: Fixing coding style violations.
ENH: Removing calls to threaded transform API.

Code/Review/itkProbe

Code/Review/itkProbesCollectorBase
COMP: implement virtual destructors to remove compilation warning.

Code/Review/itkProbesCollectorBase
BUG: Syntax error - need class declaration with destructor
COMP: add typename for iterator types

Code/Review/Attic/itkProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/Review/itkQuadEdge
COMP: changed insight journal handle to new location.

Code/Review/itkQuadEdgeCellTraitsInfo
COMP: changed insight journal handle to new location.

Code/Review/itkQuadEdgeMesh
COMP: changed insight journal handle to new location.
ENH: separate nn secure and secure interface for adding face and edge to have a faster copy mechanism.

Code/Review/itkQuadEdgeMe
BUG: failed to include its own header file.
STYLE: missing {. ENH: faster FindEdgeCell.
BUG: needed better checking for cells that were empty or non-existant.
ENH: separate nn secure and secure interface for adding face and edge to have a faster copy mechanism.
ENH: remove a bad const that was forcing users to const_cast all over.

Code/Review/itkQuadEdgeMeshBaseIterator
COMP: warning about implicit const casting.

Code/Review/itkQuadEdgeMeshBoundaryEdgesMeshFunction
BUG: failed to include its own header file.

Code/Review/itkQuadEdgeMeshEulerOperatorCreateCenterVertexFunction
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.

Code/Review/itkQuadEdgeMeshEulerOperatorCreateCenterVertexFunction
BUG: failed to include its own header file.

Code/Review/itkQuadEdgeMeshEulerOperatorDeleteCenterVertexFunction
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.

Code/Review/itkQuadEdgeMeshEulerOperatorDeleteCenterVertexFunction
BUG: failed to include its own header file.

Code/Review/itkQuadEdgeMeshEulerOperatorFlipEdgeFunction
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.

Code/Review/itkQuadEdgeMeshEulerOperatorFlipEdgeFunction
COMP: missing include files.

Code/Review/itkQuadEdgeMeshEulerOperatorJoinFacetFunction
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.

Code/Review/itkQuadEdgeMeshEulerOperatorJoinFacetFunction
BUG: failed to include its own header file.

Code/Review/itkQuadEdgeMeshEulerOperatorJoinVertexFunction
ENH: JoinVertex now handle the degenerated cases where the modification would lead to topological Modifications. In that case, the modification is not done. I might want to add a flag that let the user know why the modification has not been done. In case of topological change, the user could then choose to switch to another EulerOp which would allow it.

Code/Review/itkQuadEdgeMeshEulerOperatorJoinVertexFunction
STYLE: indent.
BUG: failed to include its own header file.

Code/Review/itkQuadEdgeMeshEulerOperatorSplitEdgeFunction
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.

Code/Review/itkQuadEdgeMeshEulerOperatorSplitFacetFunction
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.
COMP: warnings about shadowed variables.

Code/Review/itkQuadEdgeMeshEulerOperatorSplitFacetFunction
BUG: failed to include its own header file.

Code/Review/itkQuadEdgeMeshEulerOperatorSplitVertexFunction
BUG: failed to include its own header file.

Code/Review/itkQuadEdgeMeshFunctionBase
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.

Code/Review/itkQuadEdgeMeshLineCell
COMP: Only mutable member variables can be modified in a const method.

Code/Review/itkQuadEdgeMeshLineCell
ENH: Better implementation of the cell API.

Code/Review/itkQuadEdgeMeshMacro
COMP: changed insight journal handle to new location.

Code/Review/itkQuadEdgeMeshPoint
ENH: remove a bad const that was forcing users to const_cast all over.

Code/Review/itkQuadEdgeMeshPolygonCell
COMP: changed insight journal handle to new location.
BUG: remove the makeIds() call in some method to avoid legacy-window-compiler-that-we-might-not-want-to-support-forever to complain. Still slow, still to be optimized. For backward compatibility of the SetCell() method. Use AddFace() directly instead if you use a QEMesh.
STYLE: wrong ident.
ENH: the makePointIds() which is here only for backward compatibility, is now on demand. It will be called only is the user tries to call the old cell interface.

Code/Review/itkQuadEdgeMeshPolygonCell
ENH: the makePointIds() which is here only for backward compatibility, is now on demand. It will be called only is the user tries to call the old cell interface.

Code/Review/itkQuadEdgeMeshToQuadEdgeMeshFilter
COMP: changed insight journal handle to new location.

Code/Review/itkQuadEdgeMeshToQuadEdgeMeshFilter
BUG: failed to include its own header file.

Code/Review/itkQuadEdgeMeshTopologyChecker
COMP: changed insight journal handle to new location.
BUG: memory leaks because QuadEdgeTopologyChecker was created with new rather than New(). Moved constructor and destructor into protected section. Changed test to use ::New() rather than new.

Code/Review/itkQuadEdgeMeshTopologyChecker
BUG: memory leaks because QuadEdgeTopologyChecker was created with new rather than New(). Moved constructor and destructor into protected section. Changed test to use ::New() rather than new.

Code/Review/itkQuadEdgeMeshTraits
COMP: changed insight journal handle to new location.
COMP: warnings.

Code/Review/itkQuadEdgeMeshZipMeshFunction
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.

Code/Review/itkQuadEdgeMeshZipMeshFunction
BUG: should use LWDeleteEdge.

Code/Review/itkRegionalMaximaImageFilter
COMP: changed insight journal handle to new location.

Code/Review/itkRegionalMinimaImageFilter
COMP: changed insight journal handle to new location.

Code/Review/itkSmapsFileParser
ENH: Implementation of a memory usage observer for Mac OS X ( version >10.2 ) using the vmmap command
COMP: operator>> should have been defined as a friend function, not as a method. correct other small bugs

Code/Review/itkSmapsFileParser
STYLE: Bad location of { in EXPORT lines caused PrintSelfCheck to fail.
ENH: Implementation of a memory usage observer for Mac OS X ( version >10.2 ) using the vmmap command
COMP: operator>> should have been defined as a friend function, not as a method. correct other small bugs

Code/Review/itkSmapsFileParser
COMP: don't throw exceptions for unsupported linux kernels
ENH: Implementation of a memory usage observer for Mac OS X ( version >10.2 ) using the vmmap command
COMP: non-portable use of process.h
COMP: operator>> should have been defined as a friend function, not as a method. correct other small bugs

Code/Review/Attic/itkStandardDeviationProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.
COMP: changed insight journal handle to new location.

Code/Review/Attic/itkSumProjectionImageFilter
ENH: Moving Projection filters from Review to BasicFilters.

Code/Review/Attic/itkThreadSafeTransform
ENH: Backing out the thread saefe transform class because we now replicate transforms per thread. As a result, the additional API in the thread safe transform is no longer necessary.

Code/Review/itkTimeProbe

Code/Review/itkTimeProbesCollectorBase
COMP: implement virtual destructors to remove compilation warning.

Code/Review/itkTransformFileReaderWithFactory

Code/Review/itkTransformFileWriterWithFactory

Code/Review/itkTransformIOFactory
COMP: No need for itk:: modifier when inside itk nameespace. COMP: unnecessary typenames.

Code/Review/itkTxtTransformIO

Code/Review/itkVTKPolyDataReader
STYLE: unaligned typedefs.
COMP: warnings.

Code/Review/itkVTKPolyDataWriter
ENH: Improved version of writer to remove linecells when present. A better version could be written that actually write the line cell first and write the other cells after.

Code/Review/itkValuedRegionalExtremaImageFilter
COMP: changed insight journal handle to new location.

Code/Review/itkValuedRegionalMaximaImageFilter
COMP: changed insight journal handle to new location.

Code/Review/itkValuedRegionalMinimaImageFilter
BUG: Fix some classes with a broken GetNameOfClass() method. Only the classes wrapped in WrapITK are tested, so some classes may still have a broken GetNameOfClass() method.

Code/SpatialObject/itkDTITubeSpatialObjectPoint
ENH: Added SetTensorMatrix() [submitted by Casey Goodlett]

Code/SpatialObject/itkDTITubeSpatialObjectPoint
BUG: Adding radius in the copy method. (reported by Casey Goodlet)

Code/SpatialObject/itkLineSpatialObject
COMP: shadowed variable warnings.

Code/SpatialObject/itkMetaBlobConverter
COMP: shadowed variable warnings.

Code/SpatialObject/itkMetaDTITubeConverter
COMP: warning about possibly uninitialized variables.

Code/SpatialObject/itkMetaLandmarkConverter
COMP: shadowed variable warnings.

Code/SpatialObject/itkMetaLineConverter
COMP: shadowed variable warnings.

Code/SpatialObject/itkMetaSurfaceConverter
COMP: shadowed variable warnings.

Code/SpatialObject/itkMetaTubeConverter
BUG: Invalid iterator.
COMP: shadowed variable warnings.

Code/SpatialObject/itkMetaVesselTubeConverter
COMP: shadowed variable warnings.

Code/SpatialObject/itkPolygonSpatialObject
COMP: shadowed variable warnings.

Copyright/ITKCopyright.txt
ENH: Changing the license to the OSI-approved BSD license.

Examples/Data/BSplineDisplacements2.txt

Examples/Data/BSplineDisplacements3.txt

Examples/Data/BSplineDisplacements4.txt

Examples/Data/BrainProtonDensitySliceBorder20.zraw
ENH: Adding baseline images with direction cosines different from identity.

Examples/Data/BrainProtonDensitySliceBorder20DirectionMinus30.mhd

Examples/Data/BrainProtonDensitySliceBorder20DirectionPlus30.mhd
ENH: Adding baseline images with direction cosines different from identity.

Examples/Data/BrainProtonDensitySliceShifted13x17yDirectionMinus30.mhd

Examples/Data/BrainProtonDensitySliceShifted13x17yDirectionPlus30.mhd
ENH: Adding baseline images with direction cosines different from identity.

Examples/Data/BrainProtonDensitySliceShifted13x17yDirectionPlus30.zraw
ENH: Adding baseline images with direction cosines different from identity.

Examples/Data/BrainT1SliceBorder20DirectionMinus30.mhd

Examples/Data/BrainT1SliceBorder20DirectionPlus30.mhd
ENH: Adding baseline images with direction cosines different from identity.

Examples/Data/BrainT1SliceBorder20DirectionPlus30.zraw
ENH: Adding baseline images with direction cosines different from identity.

Examples/Data/DiagonalLines.png
ENH: Baseline image for testing BSpline deformable transforms.

Examples/Data/IdentityTransform.tfm
ENH: IdentityTransform to be used for initializing registration methods.

Examples/Data/LandmarkWarping3Landmarks1.txt

Examples/DataRepresentation/Mesh/PointSetWithCovariantVectors

Examples/DataRepresentation/Mesh/RGBPointSet

Examples/Filtering/CMakeLists.txt
BUG: 6135. example was incorrectly computing the number of gradient images. ENH: removed redundant code from test.
COMP: Avoid Borland LME1518 linker errors.

Examples/Filtering/DiffusionTensor3DReconstructionImageFilter
BUG: 6135. example was incorrectly computing the number of gradient images. ENH: removed redundant code from test.

Examples/Filtering/FilteringExamples5
BUG: 6135. example was incorrectly computing the number of gradient images. ENH: removed redundant code from test.

Examples/IO/DicomImageReadPrintTags
ENH: Adding a piece of code to dump the correct pixel type to instanciate the itk::ImageFileReader

Examples/Iterators/ImageLinearIteratorWithIndex
BUG: crasinh on 64 bit vista system. Try rearranging output iterator --.

Examples/Registration/BSplineWarping1

Examples/Registration/BSplineWarping2

Examples/Registration/CMakeLists.txt
ENH: Adding a comparison tolerance of 100 to the MultResolution registration tests.
BUG: The test name of DeformableRegistration15 was missing the "Test" suffix.
BUG: Removing old moving image that was left inserted by mistake.
BUG: Fixing parameters for the large memory cases of DeformableRegistration8Test.
COMP: rearrange examples in test drivers to avoid Borland compiler overflow. BUG: some tests required an input file that was generated by another example.
ENH: Fixing baseline image and ADD_TEST command for DeformableRegistration12Test.
ENH: Adding the ThinPlateSplineWarp example to the list of executables to build.
COMP: rearrange tests to avoid VS7 heap overflow.

Examples/Registration/ChangeInformationImageFilter
COMP: Fixing warning of repeated "orientation" variable shadowing a previous declaration.

Examples/Registration/DeformableRegistration12
BUG: missed std::cout as argument of the itkProbesReport() macro.
BUG: The CostFunctionConvergenceFactor for the optimizer is not an epsilon, but rather a factor that is multipled times the machine precision. The small value, 1.e-35 was causing division by zero in the optimizer code. this was only detected on the Borland builds. The factor was increased to a value recommended for moderate precision.

Examples/Registration/DeformableRegistration13
BUG: missed std::cout as argument of the itkProbesReport() macro.

Examples/Registration/DeformableRegistration14
ENH: Adding memory probes if the REVIEW directory is enabled. Done via macros.

Examples/Registration/DeformableRegistration15
COMP: Fixing warning about conversion from double to unsigned int.
ENH: Adding memory probes if the REVIEW directory is enabled. Done via macros.
ENH: Adding Affine registration phase.

Examples/Registration/DeformableRegistration4
BUG: missed std::cout as argument of the itkProbesReport() macro.

Examples/Registration/DeformableRegistration6

Examples/Registration/DeformableRegistration7
ENH: Adding memory probes if the REVIEW directory is enabled. Done via macros.

Examples/Registration/DeformableRegistration8
ENH: Adding memory probes if the REVIEW directory is enabled. Done via macros.
ENH: Add the option of reading the Bulk transform (Affine) from a file.

Examples/Registration/ImageRegistration1

Examples/Registration/ImageRegistration10

Examples/Registration/ImageRegistration11

Examples/Registration/ImageRegistration12

Examples/Registration/ImageRegistration13

Examples/Registration/ImageRegistration14

Examples/Registration/ImageRegistration15

Examples/Registration/ImageRegistration16

Examples/Registration/ImageRegistration17

Examples/Registration/ImageRegistration1o

Examples/Registration/ImageRegistration2

Examples/Registration/ImageRegistration2o

Examples/Registration/ImageRegistration3

Examples/Registration/ImageRegistration3.py

Examples/Registration/ImageRegistration3.tcl

Examples/Registration/ImageRegistration3o

Examples/Registration/ImageRegistration4

Examples/Registration/ImageRegistration4.py

Examples/Registration/ImageRegistration4.tcl

Examples/Registration/ImageRegistration4o

Examples/Registration/ImageRegistration5

Examples/Registration/ImageRegistration5.py

Examples/Registration/ImageRegistration5.tcl

Examples/Registration/ImageRegistration5o

Examples/Registration/ImageRegistration6

Examples/Registration/ImageRegistration6o

Examples/Registration/ImageRegistration7

Examples/Registration/ImageRegistration7o

Examples/Registration/ImageRegistration8

Examples/Registration/ImageRegistration9

Examples/Registration/ImageRegistrationHistogramPlotter

Examples/Registration/ModelToImageRegistration2
ENH: Using vcl_sqrt() instead of the plain sqrt() call.

Examples/Registration/MultiResImageRegistration1

Examples/Registration/MultiResImageRegistration2

Examples/Registration/RegistrationExamples10
COMP: rearrange examples in test drivers to avoid Borland compiler overflow.
COMP: rearrange tests to avoid VS7 heap overflow.

Examples/Registration/RegistrationExamples11
COMP: Split up tests to avoid compiler overflow on VS7.

Examples/Registration/RegistrationExamples12
COMP: rearrange examples in test drivers to avoid Borland compiler overflow. BUG: some tests required an input file that was generated by another example.

Examples/Registration/RegistrationExamples13
COMP: rearrange examples in test drivers to avoid Borland compiler overflow. BUG: some tests required an input file that was generated by another example.

Examples/Registration/RegistrationExamples14

Examples/Registration/RegistrationExamples3
COMP: Split up tests to avoid compiler overflow on VS7.

Examples/Registration/RegistrationExamples6

Examples/Registration/RegistrationExamples9
COMP: rearrange tests to avoid VS7 heap overflow.

Examples/Registration/ThinPlateSplineWarp

COMP: Fixing warning for unused variable.

Examples/Segmentation/HoughTransform2DCirclesImageFilter

Examples/Segmentation/HoughTransform2DLinesImageFilter

Examples/Statistics/ImageEntropy1

Testing/CMakeLists.txt

Testing/Code/Algorithms/CMakeLists.txt
BUG: SET_SOURCE_PROPERTIES should be SET_SOURCE_FILES_PROPERTIES

Testing/Code/Algorithms/itkBinaryMinMaxCurvatureFlowImageFilterTest

Testing/Code/Algorithms/itkCurvesLevelSetImageFilterTest

Testing/Code/Algorithms/itkFFTTest
BUG: poor choice of random number seed caused poor random number sequences on some platforms.

Testing/Code/Algorithms/itkFastMarchingExtensionImageFilterTest

Testing/Code/Algorithms/itkFastMarchingTest

Testing/Code/Algorithms/itkGibbsTest

Testing/Code/Algorithms/itkHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkImagePCAShapeModelEstimatorTest

Testing/Code/Algorithms/itkImageRegistrationMethodTest_15

Testing/Code/Algorithms/itkMRFImageFilterTest

Testing/Code/Algorithms/itkMRIBiasFieldCorrectionFilterTest
BUG: when exiting for error, there was no description of the reason for the failure. STYLE: various.

Testing/Code/Algorithms/itkMattesMutualInformationImageToImageMetricTest

Testing/Code/Algorithms/itkMeanSquaresHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkMinMaxCurvatureFlowImageFilterTest

Testing/Code/Algorithms/itkMultiResolutionImageRegistrationMethodTest_1

Testing/Code/Algorithms/itkMultiResolutionPyramidImageFilterTest

Testing/Code/Algorithms/itkNarrowBandCurvesLevelSetImageFilterTest
ENH: itkNarrowBandCurvesLevelSetImageFilterTest1 is now a regression test.

Testing/Code/Algorithms/itkRecursiveMultiResolutionPyramidImageFilterTest

Testing/Code/Algorithms/itkSphereMeshSourceTest

Testing/Code/BasicFilters/CMakeLists.txt
ENH: Moving Projection filters from Review to BasicFilters.
COMP: Disable regression testing for itkNarrowBandImageFilterBaseTest on 64-bit systems. The itkRandomImageSource does not produce deterministic results on 64-bit systems.
ENH: itkApproximateSignedDistanceMapImageFilterTest is now a regression test.

Testing/Code/BasicFilters/itkApproximateSignedDistanceMapImageFilterTest
ENH: itkApproximateSignedDistanceMapImageFilterTest is now a regression test.

Testing/Code/BasicFilters/itkBasicFiltersHeaderTest
ENH: Moving Projection filters from Review to BasicFilters.

Testing/Code/BasicFilters/itkBasicFiltersTests4

Testing/Code/BasicFilters/itkBasicFiltersTests5
ENH: Moving Projection filters from Review to BasicFilters.

Testing/Code/BasicFilters/itkBinaryProjectionImageFilterTest
ENH: Moving Projection filters from Review to BasicFilters.

Testing/Code/BasicFilters/itkBinaryThresholdProjectionImageFilterTest
ENH: Moving Projection filters from Review to BasicFilters.

Testing/Code/BasicFilters/itkChangeInformationImageFilterTest
ENH: minor tweak to test.

Testing/Code/BasicFilters/itkChangeLabelImageFilterTest
BUG: Direction was set to a singular matrix.

Testing/Code/BasicFilters/itkDivideImageFilterTest

Testing/Code/BasicFilters/itkDivideImageFilterTest2

Testing/Code/BasicFilters/itkHoughTransform2DCirclesImageTest

Testing/Code/BasicFilters/itkLaplacianImageFilterTest
COMP: Fixing warning about unused variable (exception in a catch block).

Testing/Code/BasicFilters/itkMaximumProjectionImageFilterTest
ENH: Moving Projection filters from Review to BasicFilters.

Testing/Code/BasicFilters/itkMaximumProjectionImageFilterTest2
ENH: Moving Projection filters from Review to BasicFilters.

Testing/Code/BasicFilters/itkMaximumProjectionImageFilterTest3
ENH: Moving Projection filters from Review to BasicFilters.

Testing/Code/BasicFilters/itkMeanProjectionImageFilterTest
ENH: Moving Projection filters from Review to BasicFilters.

Testing/Code/BasicFilters/itkMedianProjectionImageFilterTest
ENH: Moving Projection filters from Review to BasicFilters.

Testing/Code/BasicFilters/itkMinimumMaximumImageFilterTest

Testing/Code/BasicFilters/itkMinimumProjectionImageFilterTest
ENH: Moving Projection filters from Review to BasicFilters.

Testing/Code/BasicFilters/itkNarrowBandImageFilterBaseTest
ENH: itkNarrowBandImageFilterBaseTest is now a regression test.

Testing/Code/BasicFilters/itkProjectionImageFilterTest
ENH: Moving Projection filters from Review to BasicFilters.

Testing/Code/BasicFilters/itkStandardDeviationProjectionImageFilterTest
ENH: Moving Projection filters from Review to BasicFilters.

Testing/Code/BasicFilters/itkStatisticsImageFilterTest
ENH: Test the Mersenne Twister GetNormalVariate() method. As reported in bug 6442, it was not generating a correct normal variate if the variance was not 1.0. New code tests for this defect.

Testing/Code/BasicFilters/itkSumProjectionImageFilterTest
ENH: Moving Projection filters from Review to BasicFilters.

Testing/Code/Common/CMakeLists.txt
BUG: Wrong number of baseline image for one of the BSplineDeformableTransform tests.
COMP: removed itkMemoryLeakTest.
COMP: MinGW has problems with threads.
ENH: New unit test for ImportImageContainer.
ENH: Test loading of object factories from a library.
BUG: The ability to override classes with factories was not working. The main problem was the lack of a ->Register on created objects. Also, the search for overriding classes was limited to the first class in a factory. STYLE: various style issues in the itkObjectFactoryBase code. ENH: A new test to exercise the ObjectFactory code.
BUG: 0005761. Replaced itkExceptionMacro with itkGenericExceptionMacro. Also added test to cover most of the code. Fixed some compile errors in untested code.
ENH: Adding test for the itkMultiThreader class.

Testing/Code/Common/itkAffineTransformTest

Testing/Code/Common/itkBSplineDeformableTransformTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkBSplineDeformableTransformTest2

Testing/Code/Common/itkBSplineInterpolationWeightFunctionTest
ENH: Adding test for verifying symmetry of BSpline weights in SplineOrders 2 and 3 in 1D.

Testing/Code/Common/itkBSplineKernelFunctionTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkBoundingBoxTest
COMP: warnings about shadowed variables and types.

Testing/Code/Common/itkCenteredEuler3DTransformTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkCenteredRigid2DTransformTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkCommonTests

Testing/Code/Common/itkCommonTests2
ENH: New test for ImageTransformHelper. Exercises methjods for 1,2,3, and 8D.
ENH: New unit test for ImportImageContainer.
BUG: The ability to override classes with factories was not working. The main problem was the lack of a ->Register on created objects. Also, the search for overriding classes was limited to the first class in a factory. STYLE: various style issues in the itkObjectFactoryBase code. ENH: A new test to exercise the ObjectFactory code.
ENH: Adding test for the itkMultiThreader class.

Testing/Code/Common/itkCovariantVectorGeometryTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkDiffusionTensor3DTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkEuler2DTransformTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkEuler3DTransformTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkFactoryTestLib
COMP: typename issues.

Testing/Code/Common/itkFactoryTestLib

Testing/Code/Common/itkImageAdaptorTest

Testing/Code/Common/itkImageLinearIteratorTest
BUG: crashing on 64 bit vista system. Operator++ does not do bounds checking.
COMP: Added some more debug output to track down Vista issue.
COMP: shadowed variable warnings.

Testing/Code/Common/itkImageRandomIteratorTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkImageRandomIteratorTest2
ENH: Add option for computing differences with another image.

Testing/Code/Common/itkImageRandomNonRepeatingIteratorWithIndexTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkImageTransformTest
ENH: New test for ImageTransformHelper. Exercises methjods for 1,2,3, and 8D.

Testing/Code/Common/itkImportContainerTest
COMP: some 64 systems do not fail on large memory allocations.
COMP: SGIs always say they can get the memory you ask for. The expected exception will not be thrown. The oversized memory request is skipped for SGIs.
COMP: SGIs always say they can get the memory you ask for. The expected exception will not be thrown. The oversized memory request is kipped for SGIs.
ENH: New unit test for ImportImageContainer.

Testing/Code/Common/itkLinearInterpolateImageFunctionTest

Testing/Code/Common/itkMatrixTest

Testing/Code/Common/itkMeshTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkMultiThreaderTest
ENH: Adding default return value of EXIT_SUCCESS.

Testing/Code/Common/itkObjectFactoryTest
COMP: no need for classname on constructor.

Testing/Code/Common/itkObjectFactoryTest2
COMP: const_cast required.
COMP: more portable MakeImage.
ENH: Test loading of object factories from a library.

Testing/Code/Common/itkOrientedImage2DTest

Testing/Code/Common/itkOrientedImage3DTest

Testing/Code/Common/itkOrientedImageAdaptorTest
BUG: image directions cannot be singular.

Testing/Code/Common/itkPointGeometryTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkRGBPixelTest
BUG: Fixed order in less-than test

Testing/Code/Common/itkRigid2DTransformTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkRigid3DTransformTest
COMP: shadowed variable warnings.

Testing/Code/Common/itkSTLContainerAdaptorTest

Testing/Code/Common/itkSimilarity2DTransformTest
COMP: bad test for precision of difference.
COMP: shadowed variable warnings.

Testing/Code/Common/itkSimilarity3DTransformTest
COMP: warnings about shadowed variables and types.

Testing/Code/Common/itkSymmetricSecondRankTensorTest

Testing/Code/Common/itkSystemInformationTest
CMakeFiles/CMakeError.log.

Testing/Code/Common/itkVariableSizeMatrixTest
BUG: bad matrix size.
BUG: bad vector size.
ENH: New test.

Testing/Code/Common/itkVectorGeometryTest

Testing/Code/Common/itkVectorInterpolateImageFunctionTest
COMP: warnings about shadowed variables and types.

Testing/Code/Common/itkVersorTest

Testing/Code/IO/CMakeLists.txt
ENH: Add now a test that verifies the writing of BMP at 32 bits per pixel.
ENH: changed input file for itkBMPImageIOTest2 and improved the coding style.
ENH: Added MetaImageStreamingWriterIOTest

ENH: Adding tests for reading and writing 2D Directions in MetaImage and Nifti files.
ENH: Adding more test for Image Direction reading.

Testing/Code/IO/itkAnalyzeImageIOTest
COMP: Fixing warnings related to unused variable in function argument. Now using itkNotUsed() macro.
ENH: Implemented changes discussed on 20080222 teleconference to make the .hdr and .img file format reading and writing more consistent. The nifti versions of .img and .hdr images are not written by default, but will be read properly. Requesting a write of .img or .hdr will result in using the Mayo-clinic compliant version of an Analyze7.5 file format.
COMP: wanring, unused variable.
BUG: Tests were reported passing grades even if they failed internally.

Testing/Code/IO/itkBMPImageIOTest
BUG: 0005965. Image information was wrong for BMP images.

Testing/Code/IO/itkBMPImageIOTest2
ENH: changed input file for itkBMPImageIOTest2 and improved the coding style.

Testing/Code/IO/itkGDCMSeriesReadImageWrite

Testing/Code/IO/itkGEImageIOTest
COMP: trying to track down ICC 9.0 64 bit issue.
BUG: On ICC 64 bit systems, the catch exception was requesting a copy of the exception rather than a reference to the exception. This appears to cause a segfault.

Testing/Code/IO/itkIOTests
ENH: Adding a test for reading RBGA pixels.
ENH: Adding tests for reading direction cosines from 2D and 3D MetaImages.

Testing/Code/IO/itkImageFileWriterTest
COMP: trying to track down VS 7.1 problem.

Testing/Code/IO/itkImageIODirection2DTest
ENH: Adding tests for reading direction cosines from 2D and 3D MetaImages.

Testing/Code/IO/itkImageIODirection3DTest
ENH: Adding tests for reading direction cosines from 2D and 3D MetaImages.

Testing/Code/IO/itkImageReadDICOMSeriesWriteTest

Testing/Code/IO/itkLargeImageWriteReadTest
COMP: Fixing warning of conversion from double to unsigned long.
BUG: Adding return FAILURE when exceptions are produced.

Testing/Code/IO/itkMatrixImageWriteReadTest

Testing/Code/IO/itkMeshSpatialObjectIOTest

Testing/Code/IO/itkMetaImageIOTest
COMP: trying to track down segfault on 64 bit icc.

Testing/Code/IO/itkMetaImageStreamingWriterIOTest
BUG: Pixel type is unsigned char
BUG: Wrong index

Testing/Code/IO/itkNiftiImageIOTest
ENH: Updated test suite for Nifti and Analyze images to get better coverage, and to force errors from either filter.

COMP: relax error criterion for direction differences.
BUG: uninitialized image buffer causing UMR in purify.

Testing/Code/IO/itkPolygonGroupSpatialObjectXMLFileTest

Testing/Code/IO/itkReadWriteSpatialObjectTest

Testing/Code/IO/itkSymmetricSecondRankTensorImageReadTest

Testing/Code/IO/itkTIFFImageIOTest

Testing/Code/IO/itkTransformIOTest

Testing/Code/Numerics/itkAmoebaOptimizerTest
COMP: warnings.

Testing/Code/Numerics/itkLevenbergMarquardtOptimizerTest
COMP: warnings.

Testing/Code/Numerics/FEM/itkFEMElementTest
BUG: FEM files must be open in binary mode. On cygwin and mingw, seekg(streampos) does not work properly in text mode.

Testing/Code/Numerics/NeuralNetworks/CMakeLists.txt

Testing/Code/Numerics/Statistics/itkStatisticsAlgorithmTest
COMP: warning about shadowed variable.

Testing/Code/Patented/itkVectorFuzzyConnectednessImageFilterTest

Testing/Code/Review/CMakeLists.txt
ENH: There were not test for the Transform Factories.
ENH: Moving Projection filters to BasicFilters.
STYLE: Formatting ADD_TEST().
ENH: Need input arguments for OptImageToImageMetricsTest
ENH: Add OptImageToImageMetricsTest
ENH: test if the reader-writer combination is invariant.(hint: QE enforces K-complex and thus add cells).

Testing/Code/Review/Attic/OptImageToImageMetricsTest
COMP: warnings about unused parameters.
ENH: Make this test fail so that we can gather information from the platforms running the Opt code.

Testing/Code/Review/Attic/OptImageToImageMetricsTest
COMP: warnings about unused parameters.

ENH: Tests some combinations of transforms, interpolators, and metrics by walking through a small part of the parameter space. Particularly useful for comparing two builds with different settings for ITK_USE_OPTIMIZED_REGISTRATION_METHODS

Testing/Code/Review/itkAutomaticTopologyQuadEdgeMeshSourceTest

Testing/Code/Review/Attic/itkBinaryProjectionImageFilterTest
ENH: Moving Projection filters to BasicFilters.

Testing/Code/Review/Attic/itkBinaryThresholdProjectionImageFilterTest
ENH: Moving Projection filters to BasicFilters.

Testing/Code/Review/itkLabelOverlayImageFilterTest

Testing/Code/Review/itkLabelToRGBImageFilterTest

Testing/Code/Review/Attic/itkMaximumProjectionImageFilterTest
ENH: Moving Projection filters to BasicFilters.

Testing/Code/Review/Attic/itkMaximumProjectionImageFilterTest2
ENH: Moving Projection filters to BasicFilters.

Testing/Code/Review/Attic/itkMaximumProjectionImageFilterTest3
ENH: Moving Projection filters to BasicFilters.

Testing/Code/Review/Attic/itkMeanProjectionImageFilterTest
ENH: Moving Projection filters to BasicFilters.

Testing/Code/Review/Attic/itkMedianProjectionImageFilterTest
ENH: Moving Projection filters to BasicFilters.

Testing/Code/Review/Attic/itkMinimumProjectionImageFilterTest
ENH: Moving Projection filters to BasicFilters.

Testing/Code/Review/itkOptImageToImageMetricsTest
BUG: missing itk:: namespace qualifiers.

Testing/Code/Review/itkOptImageToImageMetricsTest

STYLE: Fixing several coding style violations.

Testing/Code/Review/Attic/itkProjectionImageFilterTest
ENH: Moving Projection filters to BasicFilters.

Testing/Code/Review/itkQuadEdgeMeshBasicLayerTest

Testing/Code/Review/itkQuadEdgeMeshCellInterfaceTest
COMP: warning fixed for darwin-g++.

Testing/Code/Review/itkQuadEdgeMeshDeleteEdgeTest
STYLE: indentation.

Testing/Code/Review/itkQuadEdgeMeshEulerOperatorsTest
ENH: JoinVertex now handle the degenerated cases where the modification would lead to topological Modifications. In that case, the modification is not done. I might want to add a flag that let the user know why the modification has not been done. In case of topological change, the user could then choose to switch to another EulerOp which would allow it.
BUG: memory leaks because QuadEdgeTopologyChecker was created with new rather than New(). Moved constructor and destructor into protected section. Changed test to use ::New() rather than new.

Testing/Code/Review/itkQuadEdgeMeshIteratorTest
COMP: warning about unused variable.

Testing/Code/Review/itkQuadEdgeMeshPolygonCellTest

Testing/Code/Review/itkQuadEdgeMeshTest1
BUG: memory leak. BUG: reorder delete edge in test.

Testing/Code/Review/itkReviewHeaderTest
STYLE: bad copyright.
ENH: Move OverlayFunctor in its own header so it can be used much easily in another class

Testing/Code/Review/itkReviewPrintTest
ENH: Moving Projection filters to BasicFilters.

Testing/Code/Review/itkReviewTests
ENH: There were not test for the Transform Factories.
ENH: Moving Projection filters to BasicFilters.
ENH: test if the reader-writer combination is invariant.(hint: QE enforces K-complex and thus add cells).

Testing/Code/Review/Attic/itkStandardDeviationProjectionImageFilterTest
ENH: Moving Projection filters to BasicFilters.

Testing/Code/Review/Attic/itkSumProjectionImageFilterTest
ENH: Moving Projection filters to BasicFilters.

Testing/Code/Review/itkTimeAndMemoryProbeTest
COMP: use function parameters to avoid compilation warnings

Testing/Code/Review/itkTransformFileReaderWriterTest
ENH: There were not test for the Transform Factories.

Testing/Code/Review/itkVTKPolyDataIOQuadEdgeMeshTest
ENH: test if the reader-writer combination is invariant.(hint: QE enforces K-complex and thus add cells).

Testing/Code/Review/itkVTKPolyDataWriterTest
ENH: test that include lines and traingle cells.

Testing/Code/SpatialObject/itkImageMaskSpatialObjectTest

Testing/Code/SpatialObject/itkPolygonGroupSpatialObjectTest

Testing/Data/Baseline/Algorithms/VectorThresholdSegmentationLevelSetImageFilterTest.1.png
ENH: New baseline .1 images for Windows machines

Testing/Data/Baseline/Algorithms/VectorThresholdSegmentationLevelSetImageFilterTest.png
ENH: updated baseline images to account for correct sparse field level set surface interpolation. Added ITK_USE_DEPRECATED_LEVELSET_INTERPOLATION CMake compile-time flag to switch back to old interpolation, for backward compatibility

Testing/Data/Baseline/Algorithms/itkNarrowBandCurvesLevelSetImageFilterTest.png
ENH: itkNarrowBandCurvesLevelSetImageFilterTest1 is now a regression test.

Testing/Data/Baseline/BasicFilters/HeadMRVolumeBinaryProjection100.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/BasicFilters/HeadMRVolumeBinaryProjection200.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/BasicFilters/HeadMRVolumeBinaryThresholdProjection.png
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/BasicFilters/HeadMRVolumeMaximumProjection.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/BasicFilters/HeadMRVolumeMaximumProjection0.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/BasicFilters/HeadMRVolumeMaximumProjection1.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/BasicFilters/HeadMRVolumeMaximumProjection2D0.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/BasicFilters/HeadMRVolumeMaximumProjection2D1.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/BasicFilters/HeadMRVolumeMeanProjection.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/BasicFilters/HeadMRVolumeMedianProjection.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/BasicFilters/HeadMRVolumeMinimumProjection.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/BasicFilters/HeadMRVolumeStandardDeviationProjection.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/BasicFilters/HeadMRVolumeSumProjection.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/BasicFilters/itkApproximateSignedDistanceMapImageFilterTest.png
ENH: itkApproximateSignedDistanceMapImageFilterTest is now a regression test.

Testing/Data/Baseline/BasicFilters/itkNarrowBandImageFilterBaseTest.png
ENH: itkNarrowBandImageFilterBaseTest is now a regression test.

Testing/Data/Baseline/Common/itkBSplineDeformableTransformTest2.png

Testing/Data/Baseline/Common/itkBSplineDeformableTransformTest3.png

Testing/Data/Baseline/Common/itkBSplineDeformableTransformTest4.png

Testing/Data/Baseline/IO/113766.003.001.mha
BUG: 0005951. Directions and origin were being computed incorrectly from the header information.

Testing/Data/Baseline/IO/48BitTestImage.tif

Testing/Data/Baseline/IO/ShortTestImage.tiff

Testing/Data/Baseline/IO/image_color.bmp
BUG: 0005965. Image information was wrong for BMP images.

Testing/Data/Baseline/IO/image_grayscale.bmp
BUG: 0005965. Image information was wrong for BMP images.

Testing/Data/Baseline/IO/smallRGBA.mha

Testing/Data/Baseline/Registration/DeformableRegistration12Test.png
ENH: Fixing baseline image and ADD_TEST command for DeformableRegistration12Test.

Testing/Data/Baseline/Registration/DeformableRegistration13Test.png

Testing/Data/Baseline/Registration/DeformableRegistration6Test.png

Testing/Data/Baseline/Registration/ImageRegistration1Test.1.png
COMP: Platform specific regression image for some linux systems.

Testing/Data/Baseline/Registration/ImageRegistration2Test.png

Testing/Data/Baseline/Registration/ImageRegistration8RegisteredSlice.png

Testing/Data/Baseline/Registration/MultiResImageRegistration1Test.png

Testing/Data/Baseline/Registration/MultiResImageRegistration2Test.1.png
COMP: new baseline for Borland.

Testing/Data/Baseline/Registration/MultiResImageRegistration2Test.png

Testing/Data/Baseline/Review/Attic/HeadMRVolumeBinaryProjection100.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/Review/Attic/HeadMRVolumeBinaryProjection200.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/Review/Attic/HeadMRVolumeBinaryThresholdProjection.png
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/Review/Attic/HeadMRVolumeMaximumProjection.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/Review/Attic/HeadMRVolumeMaximumProjection0.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/Review/Attic/HeadMRVolumeMaximumProjection1.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/Review/Attic/HeadMRVolumeMaximumProjection2D0.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/Review/Attic/HeadMRVolumeMaximumProjection2D1.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/Review/Attic/HeadMRVolumeMeanProjection.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/Review/Attic/HeadMRVolumeMedianProjection.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/Review/Attic/HeadMRVolumeMinimumProjection.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/Review/Attic/HeadMRVolumeStandardDeviationProjection.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/Review/Attic/HeadMRVolumeSumProjection.tif
ENH: Moving Projection filters to BasicFilters.

Testing/Data/Baseline/Review/cthead1Label-color.png

Testing/Data/Baseline/Segmentation/CannySegmentationLevelSetImageFilterTest.png
ENH: updated baseline images to account for correct sparse field level set surface interpolation. Added ITK_USE_DEPRECATED_LEVELSET_INTERPOLATION CMake compile-time flag to switch back to old interpolation, for backward compatibility

Testing/Data/Baseline/Segmentation/LaplacianSegmentationLevelSetImageFilter.png
ENH: updated baseline images to account for correct sparse field level set surface interpolation. Added ITK_USE_DEPRECATED_LEVELSET_INTERPOLATION CMake compile-time flag to switch back to old interpolation, for backward compatibility

Testing/Data/Baseline/Segmentation/ThresholdSegmentationLevelSetGrayMatterTest.1.png
ENH: New baseline .1 images for Windows machines

Testing/Data/Baseline/Segmentation/ThresholdSegmentationLevelSetGrayMatterTest.png
ENH: updated baseline images to account for correct sparse field level set surface interpolation. Added ITK_USE_DEPRECATED_LEVELSET_INTERPOLATION CMake compile-time flag to switch back to old interpolation, for backward compatibility

Testing/Data/Baseline/Segmentation/ThresholdSegmentationLevelSetVentricleTest.png
ENH: updated baseline images to account for correct sparse field level set surface interpolation. Added ITK_USE_DEPRECATED_LEVELSET_INTERPOLATION CMake compile-time flag to switch back to old interpolation, for backward compatibility

Testing/Data/Baseline/Segmentation/ThresholdSegmentationLevelSetWhiteMatterTest.1.png
ENH: New baseline .1 images for Windows machines

Testing/Data/Baseline/Segmentation/ThresholdSegmentationLevelSetWhiteMatterTest.png
ENH: updated baseline images to account for correct sparse field level set surface interpolation. Added ITK_USE_DEPRECATED_LEVELSET_INTERPOLATION CMake compile-time flag to switch back to old interpolation, for backward compatibility

Testing/Data/Input/48BitTestImage.tif

Testing/Data/Input/HeadMRVolumeWithDirection.mhd
ENH: Adding tests for reading direction cosines from 2D and 3D MetaImages.

Testing/Data/Input/HeadMRVolumeWithDirectionIdentity.mhd
ENH: Adding tests for reading direction cosines from 2D and 3D MetaImages.

Testing/Data/Input/image_color.bmp
BUG: 0005965. Image information was wrong for BMP images.

Testing/Data/Input/image_grayscale.bmp
BUG: 0005965. Image information was wrong for BMP images.

Testing/Data/Input/smallRGBA.bmp
ENH: Fixing the file size.

Utilities/CMakeLists.txt
ENH: Tracks version of libxml2
ENH: Hides output from svn command
COMP: builds agains installed versions of ITK require that metaIOConfig.h are installed.

Utilities/README.itklibxml2
ENH: Describes process behind libxml2 inclusion

Utilities/README.vxl
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/itkThirdParty.h.in
ENH: Provides support for libXML2. If itk_use_libxml2 is enabled, itklibxml2 is downloaded and installed.

Utilities/metaIOConfig

Utilities/MetaIO/.svnrev
ENH: subversion revision 194 commited to CVS
ENH: subversion revision 192 commited to CVS
ENH: subversion revision 190 commited to CVS
ENH: subversion revision 186 commited to CVS
ENH: subversion revision 184 commited to CVS
ENH: subversion revision 182 commited to CVS
ENH: subversion revision 180 commited to CVS
ENH: subversion revision 178 commited to CVS
ENH: subversion revision 176 commited to CVS
ENH: subversion revision 170 commited to CVS
ENH: subversion revision 85 commited to CVS

Utilities/MetaIO/CMakeLists.txt

Utilities/MetaIO/localMetaConfiguration

Utilities/MetaIO/metaArray

Utilities/MetaIO/metaArrow

Utilities/MetaIO/metaBlob

Utilities/MetaIO/metaCommand
STYLE: The Date and Revision keywords do not actually need to be replaced in the comments for ExtractDateFromCVS and ExtractVersionFromCVS.

ENH: Added support for integer for Slicer
ENH: Added SetOptionLabel an new tags IMAGE and FILE

Utilities/MetaIO/metaCommand
ENH: Updated tests
ENH: Syncing with version in VTK (does not allow use of std::)

Utilities/MetaIO/metaContour

Utilities/MetaIO/metaDTITube

Utilities/MetaIO/metaEllipse

Utilities/MetaIO/metaEvent

Utilities/MetaIO/metaForm

Utilities/MetaIO/metaGaussian

Utilities/MetaIO/metaGroup

Utilities/MetaIO/metaITKUtils

Utilities/MetaIO/metaImage
COMP: Added missing include of stdlib.h needed for atoi.
ENH: Updated tests
ENH: Syncing with version in VTK (does not allow use of std::)

Utilities/MetaIO/metaImage
ENH: Updated tests
ENH: Syncing with version in VTK (does not allow use of std::)

Utilities/MetaIO/metaImageTypes
ENH: Updated tests
ENH: Syncing with version in VTK (does not allow use of std::)

Utilities/MetaIO/metaImageUtils
ENH: Updated tests
ENH: Syncing with version in VTK (does not allow use of std::)

Utilities/MetaIO/metaLandmark

Utilities/MetaIO/metaLine

Utilities/MetaIO/metaMe

Utilities/MetaIO/metaMesh

Utilities/MetaIO/metaObject

Utilities/MetaIO/metaOutput
ENH: Added support for list

Utilities/MetaIO/metaScene
ENH: Updated tests
ENH: Syncing with modifications made in VTK

Utilities/MetaIO/metaScene
ENH: Updated tests

Utilities/MetaIO/metaSurface

Utilities/MetaIO/metaTransform

Utilities/MetaIO/metaTube

Utilities/MetaIO/metaTubeGra

Utilities/MetaIO/metaTubeGraph

Utilities/MetaIO/metaUtils
ENH: Updated tests
ENH: Syncing with version in VTK (does not allow use of std::)

Utilities/MetaIO/metaVesselTube

Utilities/MetaIO/doc/Attic/MetaIO-Introduction.d

Utilities/MetaIO/doc/Attic/MetaIO-Introduction.pdf

Utilities/MetaIO/doc/Attic/MetaIO-MetaCommand.d

Utilities/MetaIO/doc/README.txt
STYLE: Fixed newlines for consistency with SVN upstream.

Utilities/MetaIO/tests/testMeta10Contour
ENH: Updated tests

Utilities/MetaIO/tests/testMeta11Form
ENH: Updated tests

Utilities/MetaIO/tests/testMeta12Array
ENH: Updated tests

Utilities/MetaIO/tests/testMeta1Utils
ENH: Updated tests

Utilities/MetaIO/tests/testMeta2Object
ENH: Updated tests

Utilities/MetaIO/tests/testMeta3Image
ENH: Updated tests

Utilities/MetaIO/tests/testMeta4Tube
ENH: Updated tests

Utilities/MetaIO/tests/testMeta5Blob
ENH: Updated tests

Utilities/MetaIO/tests/testMeta6Surface
ENH: Updated tests

Utilities/MetaIO/tests/testMeta7Line
ENH: Updated tests

Utilities/MetaIO/tests/testMeta8Scene
ENH: Updated tests

Utilities/MetaIO/tests/testMeta9Landmark
ENH: Updated tests

Utilities/NrrdIO/CMakeLists.txt

Utilities/NrrdIO/NrrdConfigure.h.in

Utilities/NrrdIO/NrrdIO

Utilities/expat/CMakeLists.txt
Utilities/expat as expected by itkIncludeDirectories.cmake (and the natural organization of the source tree). You guys need an installation dashboard :) Was caught on KWWidgets dashmacmini1 dashboard.

Utilities/expat/expatConfig.h.in
BUG: [6100] Change big endian constant to use defined one on Apple, to avoid using the TRY_RUN value on universal builds.

Utilities/gdcm/CMakeLists.txt
ENH: Deal with policy framework in CMake from Brad.

Utilities/gdcm/gdcmConfigure.h.in
STYLE: fixed two incorrect comments

Utilities/gdcm/src/gdcmDocument
BUG: GDCM would fail to read a valid Implicit Dataset when the SQ would be declared as undefined length on 64bits machine (with long=8bytes)

Utilities/gdcm/src/gdcmFile

Utilities/gdcm/src/gdcmFileHelper
ENH: add API to compute expected size

Utilities/itkjpeg/jconfig.h.in
BUG: JPEG tests failed on the cygwin dashboard after the last commit which eliminated build errors on some cygwin installs. This commit fixes the failing JPEG tests. Apparently _WIN32 is not consistently defined for all compilation units under cygwin, but __CYGWIN__ is.

Utilities/itkpng/CMakeLists.txt
COMP: removed empty c files from library.

Utilities/itktiff/CMakeLists.txt
ENH: give targets unique names to fix problems when both ITK and VTK are embedded into a single larger project (as revealed by CMake 2.5)

Utilities/itktiff/tif_config.h.in
BUG: [6214] Size of int and long should be architecture dependant for universal builds on Apple

Utilities/kwsys/CMakeLists.txt
ENH: Set CMake Policy CMP0003 to NEW behavior to build without warnings with the upcoming CMake 2.6 release.
BUG: Need to install cstddef header.
ENH: turn off for now
ENH: add missing file
ENH: Added C String utilities to KWSys. Implemented strcasecmp and strncasecmp.
ENH: Adding DateStamp feature to KWSys. This provides a header file giving preprocessor access to a dated version. The 'datestamp' will be updated automatically every day by a script.

Utilities/kwsys/CPU.h.in

Utilities/kwsys/DateStamp.h.in
ENH: Created better names and a more convenient set of version date stamp macros.

Utilities/kwsys/IOStream
COMP: Avoid warning in kwsys IOStream.cxx when the helper functions are not needed. Define one public symbol to avoid complaints from archivers about empty object files.

Utilities/kwsys/Process.h.in
STYLE: minor comments

Utilities/kwsys/ProcessUNIX
STYLE: minor comments

Utilities/kwsys/String
ENH: Added C String utilities to KWSys. Implemented strcasecmp and strncasecmp.

Utilities/kwsys/String.h.in
ENH: Added C String utilities to KWSys. Implemented strcasecmp and strncasecmp.

Utilities/kwsys/String.hxx.in
STYLE: Remove references to std:: inside KWSys, even in comments. This will allow a commit check to be added.

Utilities/kwsys/System

Utilities/kwsys/System.h.in

Utilities/kwsys/SystemInformation
COMP: Fix warning in SystemInformation.cxx about possibly incorrect assignment in if condition.
ENH: fix infinite loop from size_t change
ENH: fix more warnings
ENH: fix more warnings
ENH: fix some warnings and 64 bit build windows
ENH: try to fix hp and vs 6, again...
ENH: fix for qnx, I hope, and fix indent stuff
ENH: fix build for mingw
COMP: Replace kwsys_stl:: with kwsys_ios:: for streams access.
ENH: figure out long long value
ENH: fix leaks and turn on by default

Utilities/kwsys/SystemInformation.hxx.in
COMP: Fix shared lib build on windows for KWSys's SystemInformation by adding export macro.
COMP: use kwsys_stl and not std::
ENH: enhancements for cdash, include system information and better time entries
ENH: fix leaks and turn on by default

Utilities/kwsys/SystemTools
BUG: fix install problem on make and allow symlinks to cmake bin directory
BUG: Fix previous commit to not access empty strings out of bounds.
COMP: Fix build on borland.
BUG: fix for bug 6136 make sure includes are not directories
COMP: Remove reference to vtksys. The unmangled kwsys name should be used in this source.
ENH: remove warning
ENH: Add ability to call Visual Studio macros from CMake. Add a CMake Visual Studio macro to reload a solution file automatically if CMake makes changes to .sln files or .vcproj files. Add code to call the macro automatically for any running Visual Studio instances with the .sln file open at the end of the Visual Studio Generate call. Only call the macro if some .sln or .vcproj file changed during Generate. Also, add handling for REG_EXPAND_SZ type to SystemTools::ReadRegistryValue - returned string has environment variable references expanded.
COMP: Fix warnings on 64-bit Mac OS X build. Patch from issue #3697.
bar path and just return the full path to the destination.
ENH: bad bug bad

Utilities/kwsys/SystemTools.hxx.in
BUG: fix install problem on make and allow symlinks to cmake bin directory
ENH: Add SystemTools::SplitPathRootComponent and re-implement SplitPath to use it. Add better treatment of user home directory paths.
ENH: add a touch -E command to cmake

Utilities/kwsys/hash_map.hxx.in
COMP: Fix warnings on VS9.

Utilities/kwsys/hash_set.hxx.in
COMP: Remove inline keyword from forward declaration for VS9.

Utilities/kwsys/kwsysDateStamp.cmake
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
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daily version number
ENH: Adding DateStamp feature to KWSys. This provides a header file giving preprocessor access to a dated version. The 'datestamp' will be updated automatically every day by a script.

Utilities/kwsys/kwsysDateStamp.py
ENH: Created better names and a more convenient set of version date stamp macros.

Utilities/kwsys/kwsysPlatformTestsCXX
STYLE: Work-around std:: check since this is a platform test.

Utilities/kwsys/kwsys_ios_iostream.h.in
COMP: Add streamsize and streamoff to kwsys_ios namespace for ancient streams.

Utilities/kwsys/kwsys_ios_sstream.h.in
STYLE: Remove references to std:: inside KWSys, even in comments. This will allow a commit check to be added.

Utilities/kwsys/testDynamicLoader

Utilities/kwsys/testSystemInformation
ENH: Missing copyright header.

Utilities/nifti/CMakeLists.txt
ENH: Updated to syncronize with the nifti source code repository.
ENH: add rough CPack configuration, and fix some subprojects to enable CPack support for ITK

Utilities/nifti/LICENSE
ENH: Syncronized with nifti release on sourceforge. Nothing substantial, just formatting and version numbering.

Utilities/nifti/Makefile
ENH: Updated to syncronize with the nifti source code repository.

Utilities/nifti/README
ENH: Updated to syncronize with the nifti source code repository.

Utilities/nifti/Updates.txt
ENH: Updated to syncronize with the nifti source code repository.

Utilities/nifti/Testing/CMakeLists.txt
ENH: Updated to syncronize with the nifti source code repository.

Utilities/nifti/Testing/Makefile
ENH: Syncronized with nifti release on sourceforge. Nothing substantial, just formatting and version numbering.

Utilities/nifti/Testing/README_regress
ENH: Syncronized with nifti release on sourceforge. Nothing substantial, just formatting and version numbering.

Utilities/nifti/Testing/nifti_regress_test/@show.diffs
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/@test
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/CMakeLists.txt
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/cmake_testscripts/bricks_test.
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/cmake_testscripts/comment_test.
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/cmake_testscripts/dci_test.
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/cmake_testscripts/dsets_test.
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/cmake_testscripts/dts_test.
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/cmake_testscripts/fetch_data_test.
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/cmake_testscripts/mod_header_test.
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/cmake_testscripts/newfiles_test.
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c01.versions
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c02.nt.help
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c03.hist
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c04.disp.anat0.info
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c05.mod.hdr
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c06.add.ext
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c07.cbl.4bricks
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c08.dts.19.36.11
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c09.dts4.compare
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c10.dci.ts4
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c10a.dci.run.210
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c11.add.comment
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c12.check.comments
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c13.check.hdrs
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c14.make.dsets
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/nifti_regress_test/commands/c15.new.files
COMP: Include the cmake-ified testing suite for nifti.

Utilities/nifti/Testing/niftilib/CMakeLists.txt
ENH: Updated to syncronize with the nifti source code repository.

Utilities/nifti/fsliolib/CMakeLists.txt
ENH: Updated to syncronize with the nifti source code repository.

Utilities/nifti/fsliolib/fslio
ENH: Updated to syncronize with the nifti source code repository.

Utilities/nifti/nifticdf/CMakeLists.txt
ENH: Updated to syncronize with the nifti source code repository.

Utilities/nifti/niftilib/CMakeLists.txt
ENH: Updated to syncronize with the nifti source code repository.

Utilities/nifti/niftilib/nifti1
ENH: Updated to syncronize with the nifti source code repository.

Utilities/nifti/niftilib/nifti1_io
ENH: Syncronized with nifti release on sourceforge. Nothing substantial, just formatting and version numbering.
ENH: Updated to syncronize with the nifti source code repository.
BUG: Was not handling .gz image files properly.

Utilities/nifti/niftilib/nifti1_io
ENH: Updated to syncronize with the nifti source code repository.

Utilities/nifti/utils/nifti1_test
BUG: Fixed a few bugs relating to compressed nifti files being read correctly.

Utilities/nifti/utils/nifti_tool
ENH: Updated to syncronize with the nifti source code repository.

Utilities/nifti/znzlib/CMakeLists.txt
ENH: Updated to syncronize with the nifti source code repository.

Utilities/nifti/znzlib/znzlib
ENH: Updated to syncronize with the nifti source code repository.

Utilities/vxl/CMakeLists.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/CheckPrototypeExistsCXX.cmake
ENH: all CMakeOutput.log and CMakeError.log files now are created in ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}.

Utilities/vxl/config/cmake/Modules/FindGEOTIFF.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/FindJPEG.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/FindMPEG2.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/FindNetlib.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/FindPNG.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/FindQv.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/FindTIFF.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/FindZLIB.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/UseVXL.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/VXLConfig.cmake.in
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/VXLConfig_export.cmake.in
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/NewCMake/Attic/CMakeConfigurableFile.in
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/NewCMake/FindDC1394.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/NewCMake/FindDirectShow.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/NewCMake/FindFFMPEG.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/NewCMake/FindGEOTIFF.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/Modules/NewCMake/FindwxWidgets.cmake
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/config/CMakeLists.txt
ENH: Deal with policy framework in CMake from Brad.

Utilities/vxl/config/cmake/config/vxl_config_macros.cmake
ENH: all CMakeOutput.log and CMakeError.log files now are created in ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}.

Utilities/vxl/config/cmake/config/vxl_platform_tests
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/config/cmake/config/vxl_utils.cmake
ENH: Deal with policy framework in CMake from Brad.

Utilities/vxl/config/cmake/export/CMakeLists.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vxl_config.h.in
BUG: [6100] Change big endian constant to use defined one on Apple, to avoid using the TRY_RUN value on universal builds.

Utilities/vxl/core/vxl_version
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/CMakeLists.txt
ENH: Marking VNL_CONFIG_ENABLE_SSE2 as Advanced.

Utilities/vxl/core/vnl/introduction_doxy.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_all
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_c_vector
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_complex_ops
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_config.h.in
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_cost_function
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_det
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_double_2
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_double_3
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_error
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_fastops
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_float_2
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_float_3
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_least_squares_function
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_ma
STYLE: remove trailing whitespace

Utilities/vxl/core/vnl/vnl_matlab_filewrite
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_matlab_header
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_matlab_print_format
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_matlab_read
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_matrix
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_matrix_exp
COMP: fix VC6 compiler issues.
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_matrix_fixed
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_matrix_fixed
COMP: Do not use outer_product VS6 workaround when parsing with gccxml.

Utilities/vxl/core/vnl/vnl_matrix_fixed_ref
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_nonlinear_minimizer
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_numeric_traits
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_quaternion
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_real_npolynomial
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_rotation_matrix
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_sample
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_sse
COMP: It looks like forced inlining doesn't work with gcc 3.x

Utilities/vxl/core/vnl/vnl_trace
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_vector
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_vector_fixed
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/vnl_vector_fixed_ref
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/Templates/vnl_matrix_fixed+double.2.11-
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/Templates/vnl_matrix_fixed+double.2.8-
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/Templates/vnl_matrix_fixed+double.4.20-
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/Templates/vnl_matrix_fixed+float.2.4-
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/Templates/vnl_vector_fixed+double.20-
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/Templates/vnl_vector_fixed+double.9-
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/CMakeLists.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_bracket_minimum
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_brent
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_brent_minimizer
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_chi_squared
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_conjugate_gradient
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_determinant
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_fit_parabola
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_generalized_schur
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_lbfgs
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_lbfgsb
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_levenberg_marquardt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_lsqr
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_sparse_lu
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_svd
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/vnl_symmetric_eigensystem
STYLE: removing trailing whitespace

Utilities/vxl/core/vnl/algo/tests/CMakeLists.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/tests/test_algo
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/tests/test_bracket_minimum
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/tests/test_brent_minimizer
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/tests/test_determinant
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/tests/test_driver
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/tests/test_fft2d
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/tests/test_include
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/tests/test_integral
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/tests/test_matrix_update
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/tests/test_powell
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/tests/test_qsvd
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/algo/tests/test_sparse_lu
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/examples/vnl_lsqr_test
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/examples/vnl_rosenbrock
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/examples/vnl_svd
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/io/CMakeLists.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/io/Templates/vnl_io_vector_fixed+double.4-
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/tests/CMakeLists.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/tests/test_bessel
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/tests/test_driver
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/tests/test_finite
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/tests/test_hungarian_algorithm
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/tests/test_integrant
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/tests/test_matrix_exp
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/tests/test_quaternion
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/tests/test_real_npolynomial
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/tests/test_real_polynomial
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/tests/test_rotation_matrix
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/core/vnl/xio/CMakeLists.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/CMakeLists.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/CMakeLists.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/v3p_netlib_mangle
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/v3p_netlib_prototypes
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/v3p_netlib_unmangle
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/blas/dlam
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/blas/dtrmv
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/blas/dtrmv.f
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/blas/slam
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/complex16/zlarfx
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dhgeqz
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dhgeqz.f
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dlacon
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dlacon.f
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dlaev2.P
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dlaev2
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dlaev2.f
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dlaev2
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dspr.P
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dspr
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dspr.f
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dspr
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dsptrf.P
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dsptrf
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dsptrf.f
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dsptrf
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dsptrs.P
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dsptrs
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dsptrs.f
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/lapack/double/dsptrs
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/napack/cg
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/opt/lbfgsb.P
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/opt/lbfgsb
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/opt/lbfgsb.f
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/opt/lbfgsb
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/sparse/documentation.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/sparse/readme.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/sparse/spAllocate
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/sparse/spBuild
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/sparse/spConfig
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/sparse/spDefs
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/sparse/spFactor
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/sparse/spMatrix
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/sparse/spOutput
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/sparse/spSolve
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/sparse/spUtils
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/tests/CMakeLists.txt
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/tests/lbfgsb-example1
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/v3p/netlib/tests/lbfgsb-example1.f
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/vcl/vcl_compiler
COMP: Define _CRT_SECURE_NO_DEPRECATE only if it hasnt already been defined.

Utilities/vxl/vcl/vcl_cstdlib
COMP: avoid ranlib: file: 'foo.o' has no symbols warnings by introducing a dummy proc. Some loaders issue these warnings when building static libs

Utilities/vxl/vcl/vcl_locale
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/vcl/emulation/vcl_alloc
COMP: avoid ranlib: file: 'foo.o' has no symbols warnings by introducing a dummy proc. Some loaders issue these warnings when building static libs

Utilities/vxl/vcl/emulation/vcl_hashtable
COMP: avoid ranlib: file: 'foo.o' has no symbols warnings by introducing a dummy proc. Some loaders issue these warnings when building static libs

Utilities/vxl/vcl/emulation/vcl_limits
COMP: avoid ranlib: file: 'foo.o' has no symbols warnings by introducing a dummy proc. Some loaders issue these warnings when building static libs

Utilities/vxl/vcl/emulation/vcl_rbtree_instances
COMP: avoid ranlib: file: 'foo.o' has no symbols warnings by introducing a dummy proc. Some loaders issue these warnings when building static libs

Utilities/vxl/vcl/emulation/vcl_string_instances
COMP: avoid ranlib: file: 'foo.o' has no symbols warnings by introducing a dummy proc. Some loaders issue these warnings when building static libs

Utilities/vxl/vcl/generic/vcl_ios
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/vcl/generic/vcl_ios.h
ENH: Merging changes from vxl-upstream-2006-07-20 to vxl-upstream-2007-11-09

Utilities/vxl/vcl/win32-vc60/vcl_complex
COMP: Implement vcl_tanh and vcl_tan for vcl_complex<T> directly. VS6 does not actually provide tanh or tan for std::complex<>.

Wrapping/CSwig/CMakeLists.txt
BUG: Python 2.5 requires .pyd suffixes on modules. Older versions support the suffix too.

Wrapping/CSwig/pythonfiles_install.cmake.in
BUG: Fix #2910 - use correct path to python files in build tree for install rules. (They end up in a config specific subdirectory when built with Visual Studio.)

Wrapping/CSwig/CommonB/wrap_ITKRigidTransforms
COMP: Moved VersorRigid3DTransform from wrap_ITKRigidTransforms.cxx to wrap_itkVersorTransform.cxx to avoid circular dependency in python wrappers.

Wrapping/CSwig/CommonB/wrap_itkVersorTransform
COMP: Moved VersorRigid3DTransform from wrap_ITKRigidTransforms.cxx to wrap_itkVersorTransform.cxx to avoid circular dependency in python wrappers.

Wrapping/WrapITK/CMakeLists.txt
ENH: add rough CPack configuration, and fix some subprojects to enable CPack support for ITK

Wrapping/WrapITK/CreateWrapperLibrary.cmake
ports.html#SECTION0001510000000000000000

Wrapping/WrapITK/Modules/BaseSpatialObject/wrap_itkCenteredTransformInitializer.cmake

Wrapping/WrapITK/Modules/BaseSpatialObject/wrap_itkCenteredVersorTransformInitializer.cmake

Wrapping/WrapITK/Modules/BaseTransforms/Attic/wrap_itkCenteredTransformInitializer.cmake
ENH: Add more types to work with other transforms (thanks to Michael Bell)

Wrapping/WrapITK/Modules/BaseTransforms/Attic/wrap_itkCenteredVersorTransformInitializer.cmake

Wrapping/WrapITK/Modules/Calculators/CMakeLists.txt
COMP: fix warning about wrap gap

Wrapping/WrapITK/Python/CreateLanguageSupport.cmake
COMP: fix typo in the last patch

Wrapping/WrapITK/Python/itktesting.py
STYLE: unify

Wrapping/WrapITK/Python/Tests/CMakeLists.txt
ENH: Check the names return by GetNameOfClass() in a python test

Wrapping/WrapITK/Python/Tests/getNameOfClass.py
ENH: exclude the FFT filters from the test

Wrapping/WrapITK/Python/itkExtras/__init__.py
BUG: itk.physical_point_to_index() was returning a ContinuousIndex object instead of an Index one

Wrapping/WrapITK/images/ThresholdSegmentationLevelSetGrayMatterTest.png
ENH: New baseline images for WrapITK tests

Wrapping/WrapITK/images/ThresholdSegmentationLevelSetVentricleTest.png
ENH: New baseline images for WrapITK tests

Wrapping/WrapITK/images/ThresholdSegmentationLevelSetWhiteMatterTest.png
ENH: New baseline images for WrapITK tests