itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter > Class Template Reference

#include <itkGPUPDEDeformableRegistrationFilter.h>

Detailed Description

template<typename TFixedImage, typename TMovingImage, typename TDisplacementField, typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>
class itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >

Deformably register two images using a PDE algorithm.

GPUPDEDeformableRegistrationFilter is a base case for filter implementing a PDE deformable algorithm that register two images by computing the deformation field which will map a moving image onto a fixed image.

A deformation field is represented as a image whose pixel type is some vector type with at least N elements, where N is the dimension of the fixed image. The vector type must support element access via operator []. It is assumed that the vector elements behave like floating point scalars.

This class is templated over the fixed image type, moving image type and the deformation Field type.

The input fixed and moving images are set via methods SetFixedImage and SetMovingImage respectively. An initial deformation field maybe set via SetInitialDisplacementField or SetInput. If no initial field is set, a zero field is used as the initial condition.

The output deformation field can be obtained via methods GetOutput or GetDisplacementField.

The PDE algorithm is run for a user defined number of iterations. Typically the PDE algorithm requires period Gaussian smoothing of the deformation field to enforce an elastic-like condition. The amount of smoothing is governed by a set of user defined standard deviations (one for each dimension).

In terms of memory, this filter keeps two internal buffers: one for storing the intermediate updates to the field and one for double-buffering when smoothing the deformation field. Both buffers are the same type and size as the output deformation field.

This class make use of the finite difference solver hierarchy. Update for each iteration is computed using a PDEDeformableRegistrationFunction.

Warning

This filter assumes that the fixed image type, moving image type and deformation field type all have the same number of dimensions.

See also

PDEDeformableRegistrationFunction.

Definition at line 82 of file itkGPUPDEDeformableRegistrationFilter.h.

Inheritance diagram for itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >:

Collaboration diagram for itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >:

Public Types
using	ConstPointer = SmartPointer< const Self >
using	CPUSuperclass = TParentImageFilter
using	DeformationScalarType = typename TDisplacementField::PixelType::ValueType
using	DeformationVectorType = typename TDisplacementField::PixelType
using	DisplacementFieldPointer = typename DisplacementFieldType::Pointer
using	DisplacementFieldType = TDisplacementField
using	FiniteDifferenceFunctionType = typename GPUSuperclass::FiniteDifferenceFunctionType
using	FixedImageConstPointer = typename FixedImageType::ConstPointer
using	FixedImagePointer = typename FixedImageType::Pointer
using	FixedImageType = TFixedImage
using	GPUPDEDeformableRegistrationFunctionType = GPUPDEDeformableRegistrationFunction< FixedImageType, MovingImageType, DisplacementFieldType >
using	GPUSuperclass = GPUDenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, TParentImageFilter >
using	MovingImageConstPointer = typename MovingImageType::ConstPointer
using	MovingImagePointer = typename MovingImageType::Pointer
using	MovingImageType = TMovingImage
using	OutputImageType = typename GPUSuperclass::OutputImageType
using	Pointer = SmartPointer< Self >
using	Self = GPUPDEDeformableRegistrationFilter
using	StandardDeviationsType = FixedArray< double, ImageDimension >
Public Types inherited from itk::GPUDenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
using	ConstPointer = SmartPointer< const Self >
using	CPUSuperclass = PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >
using	FiniteDifferenceFunctionType = typename GPUSuperclass::FiniteDifferenceFunctionType
using	GPUSuperclass = GPUFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
using	InputImageType = typename GPUSuperclass::InputImageType
using	OutputImageType = typename GPUSuperclass::OutputImageType
using	PixelType = typename GPUSuperclass::PixelType
using	Pointer = SmartPointer< Self >
using	Self = GPUDenseFiniteDifferenceImageFilter
using	TimeStepType = typename GPUSuperclass::TimeStepType
using	UpdateBufferType = OutputImageType
Public Types inherited from itk::GPUFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
using	ConstPointer = SmartPointer< const Self >
using	CPUSuperclass = PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >
using	FiniteDifferenceFunctionType = typename GPUFiniteDifferenceFunction< TDisplacementField >::DifferenceFunctionType
using	GPUSuperclass = GPUInPlaceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
using	InputImageType = TDisplacementField
using	InputPixelType = typename TInputImage::PixelType
using	InputPixelValueType = typename NumericTraits< InputPixelType >::ValueType
using	NeighborhoodScalesType = typename FiniteDifferenceFunctionType::NeighborhoodScalesType
using	OutputImageType = TDisplacementField
using	OutputPixelType = typename TOutputImage::PixelType
using	OutputPixelValueType = typename NumericTraits< OutputPixelType >::ValueType
using	PixelType = OutputPixelType
using	Pointer = SmartPointer< Self >
using	RadiusType = typename FiniteDifferenceFunctionType::RadiusType
using	Self = GPUFiniteDifferenceImageFilter
using	TimeStepType = typename FiniteDifferenceFunctionType::TimeStepType
Public Types inherited from itk::GPUInPlaceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
using	ConstPointer = SmartPointer< const Self >
using	CPUSuperclass = PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >
using	GPUSuperclass = GPUImageToImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
using	InputImageConstPointer = typename InputImageType::ConstPointer
using	InputImagePixelType = typename InputImageType::PixelType
using	InputImagePointer = typename InputImageType::Pointer
using	InputImageRegionType = typename InputImageType::RegionType
using	InputImageType = TDisplacementField
using	OutputImagePixelType = typename GPUSuperclass::OutputImagePixelType
using	OutputImagePointer = typename GPUSuperclass::OutputImagePointer
using	OutputImageRegionType = typename GPUSuperclass::OutputImageRegionType
using	OutputImageType = typename GPUSuperclass::OutputImageType
using	Pointer = SmartPointer< Self >
using	Self = GPUInPlaceImageFilter
Public Types inherited from itk::GPUImageToImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
using	ConstPointer = SmartPointer< const Self >
using	DataObjectIdentifierType = DataObject::DataObjectIdentifierType
using	InputImageConstPointer = typename InputImageType::ConstPointer
using	InputImagePixelType = typename InputImageType::PixelType
using	InputImagePointer = typename InputImageType::Pointer
using	InputImageRegionType = typename InputImageType::RegionType
using	InputImageType = TDisplacementField
using	Pointer = SmartPointer< Self >
using	Self = GPUImageToImageFilter
using	Superclass = PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >
Public Types inherited from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >
using	ConstPointer = SmartPointer< const Self >
using	DisplacementFieldPointer = typename DisplacementFieldType::Pointer
using	DisplacementFieldType = TDisplacementField
using	FixedImageConstPointer = typename FixedImageType::ConstPointer
using	FixedImagePointer = typename FixedImageType::Pointer
using	FixedImageType = TFixedImage
using	MovingImageConstPointer = typename MovingImageType::ConstPointer
using	MovingImagePointer = typename MovingImageType::Pointer
using	MovingImageType = TMovingImage
using	PDEDeformableRegistrationFunctionType = PDEDeformableRegistrationFunction< FixedImageType, MovingImageType, DisplacementFieldType >
using	Pointer = SmartPointer< Self >
using	Self = PDEDeformableRegistrationFilter
using	StandardDeviationsType = FixedArray< double, ImageDimension >
using	Superclass = DenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >
Public Types inherited from itk::DenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >
using	ConstPointer = SmartPointer< const Self >
using	Pointer = SmartPointer< Self >
using	Self = DenseFiniteDifferenceImageFilter
using	Superclass = FiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >
using	UpdateBufferType = OutputImageType
Public Types inherited from itk::FiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >
using	ConstPointer = SmartPointer< const Self >
using	FiniteDifferenceFunctionType = FiniteDifferenceFunction< TDisplacementField >
using	InputImageType = TDisplacementField
using	InputPixelType = typename TInputImage::PixelType
using	InputPixelValueType = typename NumericTraits< InputPixelType >::ValueType
using	NeighborhoodScalesType = typename FiniteDifferenceFunctionType::NeighborhoodScalesType
using	OutputImageType = TDisplacementField
using	OutputPixelType = typename TOutputImage::PixelType
using	OutputPixelValueType = typename NumericTraits< OutputPixelType >::ValueType
using	PixelType = OutputPixelType
using	Pointer = SmartPointer< Self >
using	RadiusType = typename FiniteDifferenceFunctionType::RadiusType
using	Self = FiniteDifferenceImageFilter
using	Superclass = InPlaceImageFilter< TDisplacementField, TDisplacementField >
using	TimeStepType = typename FiniteDifferenceFunctionType::TimeStepType
Public Types inherited from itk::InPlaceImageFilter< TDisplacementField, TDisplacementField >
using	ConstPointer = SmartPointer< const Self >
using	InputImageConstPointer = typename InputImageType::ConstPointer
using	InputImagePixelType = typename InputImageType::PixelType
using	InputImagePointer = typename InputImageType::Pointer
using	InputImageRegionType = typename InputImageType::RegionType
using	InputImageType = TDisplacementField
using	Pointer = SmartPointer< Self >
using	Self = InPlaceImageFilter
using	Superclass = ImageToImageFilter< TDisplacementField, TDisplacementField >
Public Types inherited from itk::ImageToImageFilter< TDisplacementField, TDisplacementField >
using	ConstPointer = SmartPointer< const Self >
using	InputImageConstPointer = typename InputImageType::ConstPointer
using	InputImagePixelType = typename InputImageType::PixelType
using	InputImagePointer = typename InputImageType::Pointer
using	InputImageRegionType = typename InputImageType::RegionType
using	InputImageType = TDisplacementField
using	Pointer = SmartPointer< Self >
using	Self = ImageToImageFilter
using	Superclass = ImageSource< TDisplacementField >
Public Types inherited from itk::ImageSource< TDisplacementField >
using	ConstPointer = SmartPointer< const Self >
using	DataObjectIdentifierType = Superclass::DataObjectIdentifierType
using	DataObjectPointer = DataObject::Pointer
using	DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType
using	OutputImagePixelType = typename OutputImageType::PixelType
using	OutputImagePointer = typename OutputImageType::Pointer
using	OutputImageRegionType = typename OutputImageType::RegionType
using	OutputImageType = TDisplacementField
using	Pointer = SmartPointer< Self >
using	Self = ImageSource
using	Superclass = ProcessObject
Public Types inherited from itk::ProcessObject
using	ConstPointer = SmartPointer< const Self >
using	DataObjectIdentifierType = DataObject::DataObjectIdentifierType
using	DataObjectPointer = DataObject::Pointer
using	DataObjectPointerArray = std::vector< DataObjectPointer >
using	DataObjectPointerArraySizeType = DataObjectPointerArray::size_type
using	MultiThreaderType = MultiThreaderBase
using	NameArray = std::vector< DataObjectIdentifierType >
using	Pointer = SmartPointer< Self >
using	Self = ProcessObject
using	Superclass = Object
Public Types inherited from itk::Object
using	ConstPointer = SmartPointer< const Self >
using	Pointer = SmartPointer< Self >
using	Self = Object
using	Superclass = LightObject
Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer< const Self >
using	Pointer = SmartPointer< Self >
using	Self = LightObject

Public Member Functions
DisplacementFieldType *	GetDisplacementField ()
const char *	GetNameOfClass () const override
	itkGetOpenCLSourceFromKernelMacro (GPUPDEDeformableRegistrationFilterKernel)
Public Member Functions inherited from itk::GPUDenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
const char *	GetNameOfClass () const override
	itkGetOpenCLSourceFromKernelMacro (GPUDenseFiniteDifferenceImageFilterKernel)
Public Member Functions inherited from itk::GPUFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
const FiniteDifferenceFunctionType::Pointer &	GetDifferenceFunction () const override
const char *	GetNameOfClass () const override
void	SetStateToInitialized ()
void	SetStateToUninitialized ()
void	SetDifferenceFunction (FiniteDifferenceFunctionType *differenceFunction) override
virtual void	SetState (GPUFiniteDifferenceFilterEnum _arg)
virtual const GPUFiniteDifferenceFilterEnum &	GetState () const
virtual const TimeProbe &	GetInitTime () const
virtual const TimeProbe &	GetComputeUpdateTime () const
virtual const TimeProbe &	GetApplyUpdateTime () const
virtual const TimeProbe &	GetSmoothFieldTime () const
const char *	GetNameOfClass () const override
Public Member Functions inherited from itk::GPUImageToImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
void	GenerateData () override
virtual bool	GetGPUEnabled () const
const char *	GetNameOfClass () const override
virtual void	GPUEnabledOn ()
virtual void	GraftOutput (const DataObjectIdentifierType &key, typename itk::GPUTraits< TDisplacementField >::Type *output)
virtual void	GraftOutput (typename itk::GPUTraits< TDisplacementField >::Type *output)
virtual void	SetGPUEnabled (bool _arg)
Public Member Functions inherited from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >
DisplacementFieldType *	GetDisplacementField ()
const char *	GetNameOfClass () const override
std::vector< SmartPointer< DataObject > >::size_type	GetNumberOfValidRequiredInputs () const override
virtual const StandardDeviationsType &	GetStandardDeviations () const
virtual const StandardDeviationsType &	GetUpdateFieldStandardDeviations () const
	itkGetInputMacro (FixedImage, FixedImageType)
	itkGetInputMacro (InitialDisplacementField, DisplacementFieldType)
	itkGetInputMacro (MovingImage, MovingImageType)
	itkSetInputMacro (FixedImage, FixedImageType)
	itkSetInputMacro (InitialDisplacementField, DisplacementFieldType)
	itkSetInputMacro (MovingImage, MovingImageType)
virtual void	StopRegistration ()
virtual void	SetSmoothDisplacementField (bool _arg)
virtual bool	GetSmoothDisplacementField () const
virtual void	SmoothDisplacementFieldOn ()
virtual void	SetStandardDeviations (StandardDeviationsType _arg)
virtual void	SetStandardDeviations (double value)
virtual void	SetSmoothUpdateField (bool _arg)
virtual bool	GetSmoothUpdateField () const
virtual void	SmoothUpdateFieldOn ()
virtual void	SetUpdateFieldStandardDeviations (StandardDeviationsType _arg)
virtual void	SetUpdateFieldStandardDeviations (double value)
virtual void	SetMaximumError (double _arg)
virtual double	GetMaximumError () const
virtual void	SetMaximumKernelWidth (unsigned int _arg)
virtual unsigned int	GetMaximumKernelWidth () const
const char *	GetNameOfClass () const override
Public Member Functions inherited from itk::FiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >
virtual const FiniteDifferenceFunctionType::Pointer &	GetDifferenceFunction () const
virtual const IdentifierType &	GetElapsedIterations () const
virtual bool	GetIsInitialized ()
const char *	GetNameOfClass () const override
virtual void	SetDifferenceFunction (FiniteDifferenceFunctionType *_arg)
virtual void	SetIsInitialized (bool _arg)
void	SetStateToInitialized ()
void	SetStateToUninitialized ()
virtual void	SetNumberOfIterations (IdentifierType _arg)
virtual const IdentifierType &	GetNumberOfIterations () const
virtual void	SetUseImageSpacing (bool _arg)
virtual void	UseImageSpacingOn ()
virtual const bool &	GetUseImageSpacing () const
virtual void	SetMaximumRMSError (double _arg)
virtual const double &	GetMaximumRMSError () const
virtual void	SetRMSChange (double _arg)
virtual const double &	GetRMSChange () const
virtual void	SetManualReinitialization (bool _arg)
virtual const bool &	GetManualReinitialization () const
virtual void	ManualReinitializationOn ()
Public Member Functions inherited from itk::InPlaceImageFilter< TDisplacementField, TDisplacementField >
virtual bool	CanRunInPlace () const
const char *	GetNameOfClass () const override
virtual void	SetInPlace (bool _arg)
virtual bool	GetInPlace () const
virtual void	InPlaceOn ()
Public Member Functions inherited from itk::ImageToImageFilter< TDisplacementField, TDisplacementField >
const InputImageType *	GetInput () const
const InputImageType *	GetInput (unsigned int idx) const
const char *	GetNameOfClass () const override
void	PopBackInput () override
void	PopFrontInput () override
virtual void	PushBackInput (const InputImageType *input)
virtual void	PushFrontInput (const InputImageType *input)
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetInput (const InputImageType *input)
virtual void	SetInput (unsigned int, const TDisplacementField *image)
virtual void	SetCoordinateTolerance (double _arg)
virtual double	GetCoordinateTolerance () const
virtual void	SetDirectionTolerance (double _arg)
virtual double	GetDirectionTolerance () const
Public Member Functions inherited from itk::ImageSource< TDisplacementField >
const char *	GetNameOfClass () const override
OutputImageType *	GetOutput (unsigned int idx)
OutputImageType *	GetOutput ()
const OutputImageType *	GetOutput () const
virtual void	GraftNthOutput (unsigned int idx, DataObject *graft)
ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
ProcessObject::DataObjectPointer	MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData () const
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
NameArray	GetInputNames () const
DataObjectPointerArray	GetInputs ()
MultiThreaderType *	GetMultiThreader () const
const char *	GetNameOfClass () const override
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
DataObjectPointerArray	GetOutputs ()
virtual float	GetProgress () const
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
void	IncrementProgress (float increment)
virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)
virtual DataObjectPointer	MakeOutput (DataObjectPointerArraySizeType idx)
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
void	SetMultiThreader (MultiThreaderType *threader)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float progress)
virtual void	SetReleaseDataFlag (bool val)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag () const
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	SetNumberOfWorkUnits (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfWorkUnits () const
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *cmd) const
unsigned long	AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const
LightObject::Pointer	CreateAnother () const override
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary ()
const MetaDataDictionary &	GetMetaDataDictionary () const
virtual ModifiedTimeType	GetMTime () const
const char *	GetNameOfClass () const override
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
void	Register () const override
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag) const
void	SetDebug (bool debugFlag) const
void	SetReferenceCount (int) override
void	UnRegister () const noexcept override
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
void	SetMetaDataDictionary (MetaDataDictionary &&rrhs)
virtual void	SetObjectName (std::string _arg)
virtual const std::string &	GetObjectName () const
Public Member Functions inherited from itk::LightObject
Pointer	Clone () const
virtual Pointer	CreateAnother () const
virtual void	Delete ()
virtual const char *	GetNameOfClass () const
virtual int	GetReferenceCount () const
void	Print (std::ostream &os, Indent indent=0) const
virtual void	Register () const
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const noexcept

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::GPUImageToImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
static Pointer	New ()
Static Public Member Functions inherited from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >
static Pointer	New ()
Static Public Member Functions inherited from itk::ImageToImageFilter< TDisplacementField, TDisplacementField >
static double	GetGlobalDefaultCoordinateTolerance ()
static double	GetGlobalDefaultDirectionTolerance ()
static void	SetGlobalDefaultCoordinateTolerance (double)
static void	SetGlobalDefaultDirectionTolerance (double)
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool val)
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()

Static Public Attributes
static constexpr unsigned int	ImageDimension = GPUSuperclass::ImageDimension
Static Public Attributes inherited from itk::GPUDenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
static constexpr unsigned int	ImageDimension
Static Public Attributes inherited from itk::GPUFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
static constexpr unsigned int	ImageDimension
Static Public Attributes inherited from itk::GPUInPlaceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
static constexpr unsigned int	InputImageDimension
static constexpr unsigned int	OutputImageDimension
Static Public Attributes inherited from itk::GPUImageToImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
static constexpr unsigned int	InputImageDimension
static constexpr unsigned int	OutputImageDimension
Static Public Attributes inherited from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >
static constexpr unsigned int	ImageDimension = Superclass::ImageDimension
Static Public Attributes inherited from itk::DenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >
static constexpr unsigned int	ImageDimension
Static Public Attributes inherited from itk::FiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >
static constexpr unsigned int	ImageDimension
Static Public Attributes inherited from itk::InPlaceImageFilter< TDisplacementField, TDisplacementField >
static constexpr unsigned int	InputImageDimension
static constexpr unsigned int	OutputImageDimension
Static Public Attributes inherited from itk::ImageToImageFilter< TDisplacementField, TDisplacementField >
static constexpr unsigned int	InputImageDimension
static constexpr unsigned int	OutputImageDimension
Static Public Attributes inherited from itk::ImageSource< TDisplacementField >
static constexpr unsigned int	OutputImageDimension

Protected Member Functions
virtual void	AllocateSmoothingBuffer ()
void	CopyInputToOutput () override
void	GenerateInputRequestedRegion () override
void	GenerateOutputInformation () override
	GPUPDEDeformableRegistrationFilter ()
virtual void	GPUSmoothVectorField (DisplacementFieldPointer field, typename GPUDataManager::Pointer GPUSmoothingKernels[], int GPUSmoothingKernelSizes[])
void	Initialize () override
void	InitializeIteration () override
void	PostProcessOutput () override
void	PrintSelf (std::ostream &os, Indent indent) const override
void	SmoothDisplacementField () override
void	SmoothUpdateField () override
	~GPUPDEDeformableRegistrationFilter () override=default
Protected Member Functions inherited from itk::GPUDenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
void	AllocateUpdateBuffer () override
void	ApplyUpdate (const TimeStepType &dt) override
void	CopyInputToOutput () override
UpdateBufferType *	GetUpdateBuffer () override
void	GPUApplyUpdate (const TimeStepType &dt) override
TimeStepType	GPUCalculateChange () override
	GPUDenseFiniteDifferenceImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const override
	~GPUDenseFiniteDifferenceImageFilter () override=default
Protected Member Functions inherited from itk::GPUFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
void	AllocateUpdateBuffer () override=0
void	CopyInputToOutput () override=0
void	GenerateInputRequestedRegion () override
virtual void	GPUApplyUpdate (const TimeStepType &dt)=0
virtual TimeStepType	GPUCalculateChange ()=0
	GPUFiniteDifferenceImageFilter ()
void	GPUGenerateData () override
bool	Halt () override
void	Initialize () override
void	InitializeIteration () override
void	PostProcessOutput () override
void	PrintSelf (std::ostream &os, Indent indent) const override
TimeStepType	ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const BooleanStdVectorType &valid) const override
bool	ThreadedHalt (void *) override
	~GPUFiniteDifferenceImageFilter () override
Protected Member Functions inherited from itk::GPUInPlaceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
void	AllocateOutputs () override
	GPUInPlaceImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const override
	~GPUInPlaceImageFilter () override
void	ReleaseInputs () override
Protected Member Functions inherited from itk::GPUImageToImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
virtual void	GPUGenerateData ()
	GPUImageToImageFilter ()
void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output) override
void	GraftOutput (DataObject *output) override
void	PrintSelf (std::ostream &os, Indent indent) const override
	~GPUImageToImageFilter () override
Protected Member Functions inherited from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >
void	CopyInputToOutput () override
void	GenerateInputRequestedRegion () override
void	GenerateOutputInformation () override
bool	Halt () override
void	Initialize () override
void	InitializeIteration () override
	PDEDeformableRegistrationFilter ()
void	PostProcessOutput () override
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual void	SmoothDisplacementField ()
virtual void	SmoothUpdateField ()
	~PDEDeformableRegistrationFilter () override=default
Protected Member Functions inherited from itk::DenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >
void	AllocateUpdateBuffer () override
void	ApplyUpdate (const TimeStepType &dt) override
TimeStepType	CalculateChange () override
void	CopyInputToOutput () override
	DenseFiniteDifferenceImageFilter ()
virtual UpdateBufferType *	GetUpdateBuffer ()
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual void	ThreadedApplyUpdate (const TimeStepType &dt, const ThreadRegionType &regionToProcess, ThreadIdType threadId)
virtual TimeStepType	ThreadedCalculateChange (const ThreadRegionType &regionToProcess, ThreadIdType threadId)
	~DenseFiniteDifferenceImageFilter () override=default
Protected Member Functions inherited from itk::FiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >
virtual void	AllocateUpdateBuffer ()=0
virtual void	ApplyUpdate (const TimeStepType &dt)=0
virtual TimeStepType	CalculateChange ()=0
virtual void	CopyInputToOutput ()=0
	FiniteDifferenceImageFilter ()
void	GenerateData () override
void	GenerateInputRequestedRegion () override
virtual bool	Halt ()
virtual void	Initialize ()
virtual void	InitializeIteration ()
virtual void	PostProcessOutput ()
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual TimeStepType	ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const BooleanStdVectorType &valid) const
virtual void	SetElapsedIterations (IdentifierType _arg)
virtual bool	ThreadedHalt (void *)
	~FiniteDifferenceImageFilter () override=default
Protected Member Functions inherited from itk::InPlaceImageFilter< TDisplacementField, TDisplacementField >
virtual bool	GetRunningInPlace () const
	InPlaceImageFilter ()=default
void	PrintSelf (std::ostream &os, Indent indent) const override
void	ReleaseInputs () override
	~InPlaceImageFilter () override=default
Protected Member Functions inherited from itk::ImageToImageFilter< TDisplacementField, TDisplacementField >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
void	GenerateInputRequestedRegion () override
	ImageToImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const override
void	VerifyInputInformation () const override
	~ImageToImageFilter () override=default
virtual void	PushBackInput (const DataObject *input)
virtual void	PushFrontInput (const DataObject *input)
Protected Member Functions inherited from itk::ImageSource< TDisplacementField >
virtual void	AfterThreadedGenerateData ()
virtual void	AllocateOutputs ()
virtual void	BeforeThreadedGenerateData ()
void	ClassicMultiThread (ThreadFunctionType callbackFunction)
void	GenerateData () override
virtual const ImageRegionSplitterBase *	GetImageRegionSplitter () const
	ImageSource ()
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
	~ImageSource () override=default
virtual void	ThreadedGenerateData (const OutputImageRegionType &region, ThreadIdType threadId)
virtual void	DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread)
virtual bool	GetDynamicMultiThreading () const
virtual void	SetDynamicMultiThreading (bool _arg)
virtual void	DynamicMultiThreadingOn ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
void	AddOptionalInputName (const DataObjectIdentifierType &)
void	AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateData ()
virtual void	GenerateInputRequestedRegion ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const
bool	IsIndexedInputName (const DataObjectIdentifierType &) const
bool	IsIndexedOutputName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const
DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
virtual void	PopBackInput ()
virtual void	PopFrontInput ()
void	PrintSelf (std::ostream &os, Indent indent) const override
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	PushBackInput (const DataObject *input)
virtual void	PushFrontInput (const DataObject *input)
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &name, DataObject *output)
virtual void	SetPrimaryInput (DataObject *object)
virtual void	SetPrimaryOutput (DataObject *object)
void	SetRequiredInputNames (const NameArray &)
virtual void	VerifyInputInformation () const
virtual void	VerifyPreconditions () const
	~ProcessObject () override
DataObject *	GetInput (DataObjectPointerArraySizeType idx)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryInputName () const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryOutputName () const
DataObject *	GetOutput (DataObjectPointerArraySizeType i)
const DataObject *	GetOutput (DataObjectPointerArraySizeType i) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
virtual bool	GetThreaderUpdateProgress () const
virtual void	ThreaderUpdateProgressOn ()
virtual void	SetThreaderUpdateProgress (bool arg)
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual void	SetTimeStamp (const TimeStamp &timeStamp)
	~Object () override
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Attributes
GPUDataManager::Pointer	m_GPUImageSizes {}
GPUDataManager::Pointer	m_GPUSmoothingKernels [ImageDimension] {}
int *	m_ImageSizes {}
int	m_SmoothDisplacementFieldGPUKernelHandle {}
DeformationScalarType *	m_SmoothingKernels [ImageDimension] {}
int	m_SmoothingKernelSizes [ImageDimension] {}
DisplacementFieldPointer	m_TempField {}
GPUDataManager::Pointer	m_UpdateFieldGPUSmoothingKernels [ImageDimension] {}
DeformationScalarType *	m_UpdateFieldSmoothingKernels [ImageDimension] {}
int	m_UpdateFieldSmoothingKernelSizes [ImageDimension] {}

Additional Inherited Members
Protected Types inherited from itk::DenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >
using	ThreadRegionType = typename UpdateBufferType::RegionType
Protected Types inherited from itk::ImageToImageFilter< TDisplacementField, TDisplacementField >
using	InputToOutputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::OutputImageDimension, Self::InputImageDimension >
using	OutputToInputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::InputImageDimension, Self::OutputImageDimension >
Static Protected Member Functions inherited from itk::ImageSource< TDisplacementField >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreaderCallback (void *arg)
Static Protected Member Functions inherited from itk::ProcessObject
template<typename TSourceObject >
static void	MakeRequiredOutputs (TSourceObject &sourceObject, const DataObjectPointerArraySizeType numberOfRequiredOutputs)
static constexpr float	progressFixedToFloat (uint32_t fixed)
static uint32_t	progressFloatToFixed (float f)
Protected Attributes inherited from itk::GPUDenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
int	m_ApplyUpdateGPUKernelHandle
Protected Attributes inherited from itk::GPUFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
TimeProbe	m_ApplyUpdateTime
TimeProbe	m_ComputeUpdateTime
TimeProbe	m_InitTime
TimeProbe	m_SmoothFieldTime
Protected Attributes inherited from itk::GPUImageToImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >
GPUKernelManager::Pointer	m_GPUKernelManager
Protected Attributes inherited from itk::FiniteDifferenceImageFilter< TDisplacementField, TDisplacementField >
IdentifierType	m_ElapsedIterations
bool	m_IsInitialized
bool	m_ManualReinitialization
double	m_MaximumRMSError
IdentifierType	m_NumberOfIterations
double	m_RMSChange
Protected Attributes inherited from itk::ImageSource< TDisplacementField >
bool	m_DynamicMultiThreading
Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime {}
bool	m_Updating {}
Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount {}

Member Typedef Documentation

ConstPointer

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::ConstPointer = SmartPointer<const Self>

Definition at line 93 of file itkGPUPDEDeformableRegistrationFilter.h.

CPUSuperclass

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::CPUSuperclass = TParentImageFilter

Definition at line 91 of file itkGPUPDEDeformableRegistrationFilter.h.

DeformationScalarType

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::DeformationScalarType = typename TDisplacementField::PixelType::ValueType

Definition at line 115 of file itkGPUPDEDeformableRegistrationFilter.h.

DeformationVectorType

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::DeformationVectorType = typename TDisplacementField::PixelType

Definition at line 114 of file itkGPUPDEDeformableRegistrationFilter.h.

DisplacementFieldPointer

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::DisplacementFieldPointer = typename DisplacementFieldType::Pointer

Definition at line 113 of file itkGPUPDEDeformableRegistrationFilter.h.

DisplacementFieldType

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::DisplacementFieldType = TDisplacementField

Deformation field type.

Definition at line 112 of file itkGPUPDEDeformableRegistrationFilter.h.

FiniteDifferenceFunctionType

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::FiniteDifferenceFunctionType = typename GPUSuperclass::FiniteDifferenceFunctionType

FiniteDifferenceFunction type.

Definition at line 121 of file itkGPUPDEDeformableRegistrationFilter.h.

FixedImageConstPointer

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::FixedImageConstPointer = typename FixedImageType::ConstPointer

Definition at line 104 of file itkGPUPDEDeformableRegistrationFilter.h.

FixedImagePointer

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::FixedImagePointer = typename FixedImageType::Pointer

Definition at line 103 of file itkGPUPDEDeformableRegistrationFilter.h.

FixedImageType

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::FixedImageType = TFixedImage

FixedImage image type.

Definition at line 102 of file itkGPUPDEDeformableRegistrationFilter.h.

GPUPDEDeformableRegistrationFunctionType

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::GPUPDEDeformableRegistrationFunctionType = GPUPDEDeformableRegistrationFunction<FixedImageType, MovingImageType, DisplacementFieldType>

PDEDeformableRegistrationFilterFunction type. GPUPDEDeformableRegistrationFilterFunction type.

Definition at line 126 of file itkGPUPDEDeformableRegistrationFilter.h.

GPUSuperclass

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::GPUSuperclass = GPUDenseFiniteDifferenceImageFilter<TDisplacementField, TDisplacementField, TParentImageFilter>

Definition at line 90 of file itkGPUPDEDeformableRegistrationFilter.h.

MovingImageConstPointer

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::MovingImageConstPointer = typename MovingImageType::ConstPointer

Definition at line 109 of file itkGPUPDEDeformableRegistrationFilter.h.

MovingImagePointer

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::MovingImagePointer = typename MovingImageType::Pointer

Definition at line 108 of file itkGPUPDEDeformableRegistrationFilter.h.

MovingImageType

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::MovingImageType = TMovingImage

MovingImage image type.

Definition at line 107 of file itkGPUPDEDeformableRegistrationFilter.h.

OutputImageType

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::OutputImageType = typename GPUSuperclass::OutputImageType

Types inherited from the GPUSuperclass

Definition at line 118 of file itkGPUPDEDeformableRegistrationFilter.h.

Pointer

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::Pointer = SmartPointer<Self>

Definition at line 92 of file itkGPUPDEDeformableRegistrationFilter.h.

Self

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::Self = GPUPDEDeformableRegistrationFilter

Standard class type aliases.

Definition at line 89 of file itkGPUPDEDeformableRegistrationFilter.h.

StandardDeviationsType

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

using itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::StandardDeviationsType = FixedArray<double, ImageDimension>

Definition at line 142 of file itkGPUPDEDeformableRegistrationFilter.h.

Constructor & Destructor Documentation

GPUPDEDeformableRegistrationFilter()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::GPUPDEDeformableRegistrationFilter ( )

protected

~GPUPDEDeformableRegistrationFilter()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::~GPUPDEDeformableRegistrationFilter ( )

overrideprotecteddefault

Member Function Documentation

AllocateSmoothingBuffer()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

virtual void itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::AllocateSmoothingBuffer ( )

protectedvirtual

CopyInputToOutput()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

void itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::CopyInputToOutput ( )

overrideprotectedvirtual

Copy the data from the input to the output.

If the input does not exist, a zero field is written to the output.

Implements itk::GPUFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField, PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > >.

GenerateInputRequestedRegion()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

void itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::GenerateInputRequestedRegion ( )

overrideprotectedvirtual

It is difficult to compute in advance the input moving image region required to compute the requested output region. Thus the safest thing to do is to request for the whole moving image.

For the fixed image and deformation field, the input requested region set to be the same as that of the output requested region.

Reimplemented from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >.

GenerateOutputInformation()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

void itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::GenerateOutputInformation ( )

overrideprotectedvirtual

By default the output deformation field has the same Spacing, Origin and LargestPossibleRegion as the input/initial deformation field. If the initial deformation field is not set, the output information is copied from the fixed image.

Reimplemented from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >.

GetDisplacementField()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

DisplacementFieldType * itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::GetDisplacementField ( )

inline

Get output deformation field.

Definition at line 137 of file itkGPUPDEDeformableRegistrationFilter.h.

GetNameOfClass()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

const char * itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::GetNameOfClass ( ) const

overridevirtual

See also

LightObject::GetNameOfClass()

Reimplemented from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >.

GPUSmoothVectorField()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

virtual void itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::GPUSmoothVectorField ( DisplacementFieldPointer  field, typename GPUDataManager::Pointer  GPUSmoothingKernels[], int  GPUSmoothingKernelSizes[]  )

protectedvirtual

Smooth a vector field using a separable Gaussian kernel.

The smoothed field may be m_DisplacementField or m_UpdateBuffer.

Initialize()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

void itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::Initialize ( )

overrideprotectedvirtual

Initialize flags.

Called before iterating the solution.

Reimplemented from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >.

InitializeIteration()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

void itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::InitializeIteration ( )

overrideprotectedvirtual

Initialize the state of filter and equation before each iteration. Progress feedback is implemented as part of this method.

Reimplemented from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >.

itkGetOpenCLSourceFromKernelMacro()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::itkGetOpenCLSourceFromKernelMacro

(

GPUPDEDeformableRegistrationFilterKernel

)

Get OpenCL Kernel source as a string, creates a GetOpenCLSource method

New()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

static Pointer itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::New ( )

static

Method for creation through the object factory.

PostProcessOutput()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

void itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::PostProcessOutput ( )

overrideprotectedvirtual

Release the memory of the internal buffers.

Called after the solution has been generated.

Reimplemented from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >.

PrintSelf()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

void itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >.

SmoothDisplacementField()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

void itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::SmoothDisplacementField ( )

overrideprotectedvirtual

Utility to smooth the deformation field (represented in the Output) using a separable Gaussian kernel. The amount of smoothing can be specified by setting the StandardDeviations.

Reimplemented from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >.

SmoothUpdateField()

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

void itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::SmoothUpdateField ( )

overrideprotectedvirtual

Smooth the UpdateBuffer using a separable Gaussian kernel. The amount of smoothing can be specified by setting the UpdateFieldStandardDeviations.

Reimplemented from itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >.

Member Data Documentation

ImageDimension

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

constexpr unsigned int itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::ImageDimension = GPUSuperclass::ImageDimension

staticconstexpr

Inherit some enums and type alias from the GPUSuperclass.

Definition at line 130 of file itkGPUPDEDeformableRegistrationFilter.h.

m_GPUImageSizes

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

GPUDataManager::Pointer itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::m_GPUImageSizes {}

private

Definition at line 233 of file itkGPUPDEDeformableRegistrationFilter.h.

m_GPUSmoothingKernels

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

GPUDataManager::Pointer itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::m_GPUSmoothingKernels[ImageDimension] {}

private

Definition at line 225 of file itkGPUPDEDeformableRegistrationFilter.h.

m_ImageSizes

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

int* itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::m_ImageSizes {}

private

Definition at line 232 of file itkGPUPDEDeformableRegistrationFilter.h.

m_SmoothDisplacementFieldGPUKernelHandle

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

int itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::m_SmoothDisplacementFieldGPUKernelHandle {}

private

Definition at line 236 of file itkGPUPDEDeformableRegistrationFilter.h.

m_SmoothingKernels

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

DeformationScalarType* itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::m_SmoothingKernels[ImageDimension] {}

private

Definition at line 224 of file itkGPUPDEDeformableRegistrationFilter.h.

m_SmoothingKernelSizes

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

int itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::m_SmoothingKernelSizes[ImageDimension] {}

private

Memory buffer for smoothing kernels of the displacement field.

Definition at line 223 of file itkGPUPDEDeformableRegistrationFilter.h.

m_TempField

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

DisplacementFieldPointer itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::m_TempField {}

private

Temporary deformation field use for smoothing the the deformation field.

Definition at line 219 of file itkGPUPDEDeformableRegistrationFilter.h.

m_UpdateFieldGPUSmoothingKernels

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

GPUDataManager::Pointer itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::m_UpdateFieldGPUSmoothingKernels[ImageDimension] {}

private

Definition at line 230 of file itkGPUPDEDeformableRegistrationFilter.h.

m_UpdateFieldSmoothingKernels

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

DeformationScalarType* itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::m_UpdateFieldSmoothingKernels[ImageDimension] {}

private

Definition at line 229 of file itkGPUPDEDeformableRegistrationFilter.h.

m_UpdateFieldSmoothingKernelSizes

template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TParentImageFilter = PDEDeformableRegistrationFilter<TFixedImage, TMovingImage, TDisplacementField>>

int itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField, TParentImageFilter >::m_UpdateFieldSmoothingKernelSizes[ImageDimension] {}

private

Memory buffer for smoothing kernels of the update field.

Definition at line 228 of file itkGPUPDEDeformableRegistrationFilter.h.

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The documentation for this class was generated from the following file:

• itkGPUPDEDeformableRegistrationFilter.h