template<typename TInputImage, typename TKernelImage = TInputImage, typename TOutputImage = TInputImage, typename TInternalPrecision = double>
class itk::ProjectedLandweberDeconvolutionImageFilter< TInputImage, TKernelImage, TOutputImage, TInternalPrecision >
Deconvolve an image using the projected Landweber deconvolution algorithm.
This filter performs the same calculation per iteration as the LandweberDeconvolutionImageFilter. However, at each iteration, negative pixels in the intermediate result are projected (set) to zero. This is useful if the solution is assumed to always be non-negative, which is the case when dealing with images formed by counting photons, for example.
This code was adapted from the Insight Journal contribution:
"Deconvolution: infrastructure and reference algorithms" by Gaetan Lehmann https://doi.org/10.54294/tvgfv1
- Author
- Gaetan Lehmann, Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France
-
Cory Quammen, The University of North Carolina at Chapel Hill
- See also
- IterativeDeconvolutionImageFilter
-
RichardsonLucyDeconvolutionImageFilter
-
LandweberDeconvolutionImageFilter
Definition at line 56 of file itkProjectedLandweberDeconvolutionImageFilter.h.
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using | ConstPointer = SmartPointer< const Self > |
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using | InputImageType = TInputImage |
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using | KernelImageType = TKernelImage |
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using | OutputImageType = TOutputImage |
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using | Pointer = SmartPointer< Self > |
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using | Self = ProjectedLandweberDeconvolutionImageFilter |
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using | Superclass = ProjectedIterativeDeconvolutionImageFilter< LandweberDeconvolutionImageFilter< TInputImage, TKernelImage, TOutputImage, TInternalPrecision > > |
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using | ConstPointer = SmartPointer< const Self > |
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using | Pointer = SmartPointer< Self > |
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using | Self = ProjectedIterativeDeconvolutionImageFilter |
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using | Superclass = LandweberDeconvolutionImageFilter< TInputImage, TInputImage, TInputImage, double > |
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Public Types inherited from itk::LandweberDeconvolutionImageFilter< TInputImage, TInputImage, TInputImage, double > |
using | ConstPointer = SmartPointer< const Self > |
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using | InputImageType = TInputImage |
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using | KernelImageType = TInputImage |
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using | OutputImageType = TInputImage |
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using | Pointer = SmartPointer< Self > |
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using | Self = LandweberDeconvolutionImageFilter |
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using | Superclass = IterativeDeconvolutionImageFilter< TInputImage, TInputImage, TInputImage, double > |
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using | ConstPointer = SmartPointer< const Self > |
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using | InputImageType = TInputImage |
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using | KernelImageType = TInputImage |
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using | OutputImageType = TInputImage |
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using | Pointer = SmartPointer< Self > |
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using | Self = IterativeDeconvolutionImageFilter |
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using | Superclass = FFTConvolutionImageFilter< TInputImage, TInputImage, TInputImage, double > |
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using | ConstPointer = SmartPointer< const Self > |
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using | InputImageType = TInputImage |
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using | InputIndexType = typename InputImageType::IndexType |
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using | InputPixelType = typename InputImageType::PixelType |
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using | InputRegionType = typename InputImageType::RegionType |
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using | InputSizeType = typename InputImageType::SizeType |
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using | InternalComplexImagePointerType = typename InternalComplexImageType::Pointer |
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using | InternalComplexImageType = Image< InternalComplexType, TInputImage::ImageDimension > |
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using | InternalComplexType = std::complex< double > |
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using | InternalImagePointerType = typename InternalImageType::Pointer |
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using | InternalImageType = Image< double, TInputImage::ImageDimension > |
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using | InternalIndexType = typename InternalImageType::IndexType |
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using | InternalRegionType = typename InternalImageType::RegionType |
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using | InternalSizeType = typename InternalImageType::SizeType |
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using | KernelImageType = TInputImage |
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using | KernelIndexType = typename KernelImageType::IndexType |
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using | KernelPixelType = typename KernelImageType::PixelType |
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using | KernelRegionType = typename KernelImageType::RegionType |
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using | KernelSizeType = typename KernelImageType::SizeType |
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using | OutputImageType = TInputImage |
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using | OutputIndexType = typename OutputImageType::IndexType |
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using | OutputPixelType = typename OutputImageType::PixelType |
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using | OutputRegionType = typename OutputImageType::RegionType |
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using | OutputSizeType = typename OutputImageType::SizeType |
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using | Pointer = SmartPointer< Self > |
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using | Self = FFTConvolutionImageFilter |
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using | SizeValueType = typename InputSizeType::SizeValueType |
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using | Superclass = ConvolutionImageFilterBase< TInputImage, TInputImage, TInputImage > |
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using | BoundaryConditionType = ImageBoundaryCondition< TInputImage > |
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using | ConstPointer = SmartPointer< const Self > |
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using | DefaultBoundaryConditionType = ZeroFluxNeumannBoundaryCondition< TInputImage > |
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using | InputImageType = TInputImage |
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using | InputIndexType = typename InputImageType::IndexType |
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using | InputPixelType = typename InputImageType::PixelType |
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using | InputRegionType = typename InputImageType::RegionType |
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using | InputSizeType = typename InputImageType::SizeType |
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using | KernelImageType = TInputImage |
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using | KernelIndexType = typename KernelImageType::IndexType |
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using | KernelPixelType = typename KernelImageType::PixelType |
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using | KernelRegionType = typename KernelImageType::RegionType |
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using | KernelSizeType = typename KernelImageType::SizeType |
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using | OutputImageType = TInputImage |
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using | OutputIndexType = typename OutputImageType::IndexType |
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using | OutputPixelType = typename OutputImageType::PixelType |
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using | OutputRegionModeEnum = ConvolutionImageFilterBaseEnums::ConvolutionImageFilterOutputRegion |
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using | OutputRegionType = typename OutputImageType::RegionType |
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using | OutputSizeType = typename OutputImageType::SizeType |
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using | Pointer = SmartPointer< Self > |
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using | Self = ConvolutionImageFilterBase |
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using | SizeValueType = typename InputSizeType::SizeValueType |
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using | Superclass = ImageToImageFilter< TInputImage, TInputImage > |
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using | ConstPointer = SmartPointer< const Self > |
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using | InputImageConstPointer = typename InputImageType::ConstPointer |
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using | InputImagePixelType = typename InputImageType::PixelType |
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using | InputImagePointer = typename InputImageType::Pointer |
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using | InputImageRegionType = typename InputImageType::RegionType |
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using | InputImageType = TInputImage |
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using | Pointer = SmartPointer< Self > |
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using | Self = ImageToImageFilter |
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using | Superclass = ImageSource< TInputImage > |
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using | ConstPointer = SmartPointer< const Self > |
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using | DataObjectIdentifierType = Superclass::DataObjectIdentifierType |
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using | DataObjectPointer = DataObject::Pointer |
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using | DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType |
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using | OutputImagePixelType = typename OutputImageType::PixelType |
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using | OutputImagePointer = typename OutputImageType::Pointer |
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using | OutputImageRegionType = typename OutputImageType::RegionType |
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using | OutputImageType = TInputImage |
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using | Pointer = SmartPointer< Self > |
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using | Self = ImageSource |
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using | Superclass = ProcessObject |
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using | ConstPointer = SmartPointer< const Self > |
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using | DataObjectIdentifierType = DataObject::DataObjectIdentifierType |
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using | DataObjectPointer = DataObject::Pointer |
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using | DataObjectPointerArray = std::vector< DataObjectPointer > |
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using | DataObjectPointerArraySizeType = DataObjectPointerArray::size_type |
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using | MultiThreaderType = MultiThreaderBase |
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using | NameArray = std::vector< DataObjectIdentifierType > |
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using | Pointer = SmartPointer< Self > |
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using | Self = ProcessObject |
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using | Superclass = Object |
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using | ConstPointer = SmartPointer< const Self > |
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using | Pointer = SmartPointer< Self > |
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using | Self = Object |
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using | Superclass = LightObject |
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using | ConstPointer = SmartPointer< const Self > |
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using | Pointer = SmartPointer< Self > |
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using | Self = LightObject |
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const char * | GetNameOfClass () const override |
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const char * | GetNameOfClass () const override |
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Public Member Functions inherited from itk::LandweberDeconvolutionImageFilter< TInputImage, TInputImage, TInputImage, double > |
const char * | GetNameOfClass () const override |
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virtual void | SetAlpha (double _arg) |
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virtual double | GetAlpha () |
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virtual unsigned int | GetIteration () const |
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virtual InternalImageType * | GetModifiableCurrentEstimate () |
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const char * | GetNameOfClass () const override |
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virtual void | SetNumberOfIterations (unsigned int _arg) |
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virtual unsigned int | GetNumberOfIterations () |
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void | SetStopIteration (bool stop) |
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virtual bool | GetStopIteration () const |
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const char * | GetNameOfClass () const override |
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virtual SizeValueType | GetSizeGreatestPrimeFactor () |
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virtual void | SetSizeGreatestPrimeFactor (SizeValueType _arg) |
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const char * | GetNameOfClass () const override |
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virtual void | SetBoundaryCondition (BoundaryConditionType *_arg) |
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virtual BoundaryConditionType * | GetBoundaryCondition () const |
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| itkSetInputMacro (KernelImage, KernelImageType) |
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| itkGetInputMacro (KernelImage, KernelImageType) |
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virtual void | SetNormalize (bool _arg) |
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virtual bool | GetNormalize () const |
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virtual void | NormalizeOn () |
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virtual void | SetOutputRegionMode (const OutputRegionModeEnum _arg) |
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virtual OutputRegionModeEnum | GetOutputRegionMode () const |
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virtual void | SetOutputRegionModeToSame () |
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virtual void | SetOutputRegionModeToValid () |
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const InputImageType * | GetInput () const |
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const InputImageType * | GetInput (unsigned int idx) const |
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const char * | GetNameOfClass () const override |
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void | PopBackInput () override |
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void | PopFrontInput () override |
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virtual void | PushBackInput (const InputImageType *input) |
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virtual void | PushFrontInput (const InputImageType *input) |
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virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
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virtual void | SetInput (const InputImageType *input) |
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virtual void | SetInput (unsigned int, const TInputImage *image) |
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virtual void | SetCoordinateTolerance (double _arg) |
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virtual double | GetCoordinateTolerance () const |
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virtual void | SetDirectionTolerance (double _arg) |
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virtual double | GetDirectionTolerance () const |
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const char * | GetNameOfClass () const override |
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OutputImageType * | GetOutput (unsigned int idx) |
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OutputImageType * | GetOutput () |
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const OutputImageType * | GetOutput () const |
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virtual void | GraftOutput (DataObject *graft) |
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virtual void | GraftOutput (const DataObjectIdentifierType &key, DataObject *graft) |
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virtual void | GraftNthOutput (unsigned int idx, DataObject *graft) |
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ProcessObject::DataObjectPointer | MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override |
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ProcessObject::DataObjectPointer | MakeOutput (const ProcessObject::DataObjectIdentifierType &) override |
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virtual void | AbortGenerateDataOn () |
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virtual void | EnlargeOutputRequestedRegion (DataObject *) |
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virtual const bool & | GetAbortGenerateData () const |
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DataObjectPointerArray | GetIndexedInputs () |
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DataObjectPointerArray | GetIndexedOutputs () |
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NameArray | GetInputNames () const |
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DataObjectPointerArray | GetInputs () |
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MultiThreaderType * | GetMultiThreader () const |
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const char * | GetNameOfClass () const override |
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DataObjectPointerArraySizeType | GetNumberOfIndexedInputs () const |
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DataObjectPointerArraySizeType | GetNumberOfIndexedOutputs () const |
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DataObjectPointerArraySizeType | GetNumberOfInputs () const |
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DataObjectPointerArraySizeType | GetNumberOfOutputs () const |
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virtual DataObjectPointerArraySizeType | GetNumberOfValidRequiredInputs () const |
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NameArray | GetOutputNames () const |
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DataObjectPointerArray | GetOutputs () |
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virtual float | GetProgress () const |
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NameArray | GetRequiredInputNames () const |
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bool | HasInput (const DataObjectIdentifierType &key) const |
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bool | HasOutput (const DataObjectIdentifierType &key) const |
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void | IncrementProgress (float increment) |
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virtual DataObjectPointer | MakeOutput (const DataObjectIdentifierType &) |
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virtual DataObjectPointer | MakeOutput (DataObjectPointerArraySizeType idx) |
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virtual void | PrepareOutputs () |
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virtual void | PropagateRequestedRegion (DataObject *output) |
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virtual void | ResetPipeline () |
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virtual void | SetAbortGenerateData (bool _arg) |
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void | SetMultiThreader (MultiThreaderType *threader) |
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virtual void | Update () |
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virtual void | UpdateLargestPossibleRegion () |
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virtual void | UpdateOutputData (DataObject *output) |
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virtual void | UpdateOutputInformation () |
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void | UpdateProgress (float progress) |
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virtual void | SetReleaseDataFlag (bool val) |
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virtual bool | GetReleaseDataFlag () const |
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void | ReleaseDataFlagOn () |
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void | ReleaseDataFlagOff () |
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virtual void | SetReleaseDataBeforeUpdateFlag (bool _arg) |
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virtual const bool & | GetReleaseDataBeforeUpdateFlag () const |
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virtual void | ReleaseDataBeforeUpdateFlagOn () |
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virtual void | SetNumberOfWorkUnits (ThreadIdType _arg) |
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virtual const ThreadIdType & | GetNumberOfWorkUnits () const |
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unsigned long | AddObserver (const EventObject &event, Command *cmd) const |
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unsigned long | AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const |
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LightObject::Pointer | CreateAnother () const override |
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virtual void | DebugOff () const |
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virtual void | DebugOn () const |
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Command * | GetCommand (unsigned long tag) |
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bool | GetDebug () const |
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MetaDataDictionary & | GetMetaDataDictionary () |
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const MetaDataDictionary & | GetMetaDataDictionary () const |
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virtual ModifiedTimeType | GetMTime () const |
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const char * | GetNameOfClass () const override |
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virtual const TimeStamp & | GetTimeStamp () const |
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bool | HasObserver (const EventObject &event) const |
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void | InvokeEvent (const EventObject &) |
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void | InvokeEvent (const EventObject &) const |
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virtual void | Modified () const |
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void | Register () const override |
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void | RemoveAllObservers () |
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void | RemoveObserver (unsigned long tag) const |
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void | SetDebug (bool debugFlag) const |
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void | SetReferenceCount (int) override |
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void | UnRegister () const noexcept override |
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void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
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void | SetMetaDataDictionary (MetaDataDictionary &&rrhs) |
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virtual void | SetObjectName (std::string _arg) |
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virtual const std::string & | GetObjectName () const |
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Pointer | Clone () const |
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virtual Pointer | CreateAnother () const |
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virtual void | Delete () |
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virtual const char * | GetNameOfClass () const |
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virtual int | GetReferenceCount () const |
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void | Print (std::ostream &os, Indent indent=0) const |
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virtual void | Register () const |
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virtual void | SetReferenceCount (int) |
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virtual void | UnRegister () const noexcept |
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| ProjectedLandweberDeconvolutionImageFilter () |
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| ~ProjectedLandweberDeconvolutionImageFilter () override |
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void | Initialize (ProgressAccumulator *progress, float progressWeight, float iterationProgressWeight) override |
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void | Iteration (ProgressAccumulator *progress, float iterationProgressWeight) override |
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| ProjectedIterativeDeconvolutionImageFilter () |
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| ~ProjectedIterativeDeconvolutionImageFilter () override |
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Protected Member Functions inherited from itk::LandweberDeconvolutionImageFilter< TInputImage, TInputImage, TInputImage, double > |
void | Finish (ProgressAccumulator *progress, float progressWeight) override |
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void | Initialize (ProgressAccumulator *progress, float progressWeight, float iterationProgressWeight) override |
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void | Iteration (ProgressAccumulator *progress, float iterationProgressWeight) override |
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| LandweberDeconvolutionImageFilter () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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| ~LandweberDeconvolutionImageFilter () override |
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virtual void | Finish (ProgressAccumulator *progress, float progressWeight) |
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void | GenerateData () override |
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void | GenerateInputRequestedRegion () override |
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virtual void | Initialize (ProgressAccumulator *progress, float progressWeight, float iterationProgressWeight) |
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virtual void | Iteration (ProgressAccumulator *, float)=0 |
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| IterativeDeconvolutionImageFilter () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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| ~IterativeDeconvolutionImageFilter () override |
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void | CropOutput (InternalImageType *paddedOutput, ProgressAccumulator *progress, float progressWeight) |
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| FFTConvolutionImageFilter () |
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void | GenerateData () override |
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void | GenerateInputRequestedRegion () override |
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InternalSizeType | GetFFTPadSize () const |
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KernelSizeType | GetKernelRadius () const |
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bool | GetXDimensionIsOdd () const |
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void | PadInput (const InputImageType *input, InternalImagePointerType &paddedInput, ProgressAccumulator *progress, float progressWeight) |
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void | PrepareInput (const InputImageType *input, InternalComplexImagePointerType &preparedInput, ProgressAccumulator *progress, float progressWeight) |
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void | PrepareInputs (const InputImageType *input, const KernelImageType *kernel, InternalComplexImagePointerType &preparedInput, InternalComplexImagePointerType &preparedKernel, ProgressAccumulator *progress, float progressWeight) |
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void | PrepareKernel (const KernelImageType *kernel, InternalComplexImagePointerType &preparedKernel, ProgressAccumulator *progress, float progressWeight) |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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void | ProduceOutput (InternalComplexImageType *paddedOutput, ProgressAccumulator *progress, float progressWeight) |
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void | TransformPaddedInput (const InternalImageType *paddedInput, InternalComplexImagePointerType &transformedInput, ProgressAccumulator *progress, float progressWeight) |
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| ~FFTConvolutionImageFilter () override=default |
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| ConvolutionImageFilterBase () |
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void | GenerateOutputInformation () override |
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OutputRegionType | GetValidRegion () const |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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void | VerifyInputInformation () const override |
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| ~ConvolutionImageFilterBase () override=default |
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virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
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virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
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void | GenerateInputRequestedRegion () override |
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| ImageToImageFilter () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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void | VerifyInputInformation () const override |
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| ~ImageToImageFilter () override=default |
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virtual void | PushBackInput (const DataObject *input) |
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virtual void | PushFrontInput (const DataObject *input) |
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virtual void | AfterThreadedGenerateData () |
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virtual void | AllocateOutputs () |
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virtual void | BeforeThreadedGenerateData () |
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void | ClassicMultiThread (ThreadFunctionType callbackFunction) |
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void | GenerateData () override |
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virtual const ImageRegionSplitterBase * | GetImageRegionSplitter () const |
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| ImageSource () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion) |
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| ~ImageSource () override=default |
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virtual void | ThreadedGenerateData (const OutputImageRegionType ®ion, ThreadIdType threadId) |
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virtual void | DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) |
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virtual bool | GetDynamicMultiThreading () const |
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virtual void | SetDynamicMultiThreading (bool _arg) |
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virtual void | DynamicMultiThreadingOn () |
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virtual void | AddInput (DataObject *input) |
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void | AddOptionalInputName (const DataObjectIdentifierType &) |
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void | AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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virtual void | AddOutput (DataObject *output) |
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bool | AddRequiredInputName (const DataObjectIdentifierType &) |
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bool | AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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virtual void | CacheInputReleaseDataFlags () |
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virtual void | GenerateData () |
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virtual void | GenerateInputRequestedRegion () |
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virtual void | GenerateOutputInformation () |
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virtual void | GenerateOutputRequestedRegion (DataObject *output) |
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DataObject * | GetInput (const DataObjectIdentifierType &key) |
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const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
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virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () const |
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virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () const |
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bool | IsIndexedInputName (const DataObjectIdentifierType &) const |
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bool | IsIndexedOutputName (const DataObjectIdentifierType &) const |
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bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
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DataObjectPointerArraySizeType | MakeIndexFromInputName (const DataObjectIdentifierType &name) const |
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DataObjectPointerArraySizeType | MakeIndexFromOutputName (const DataObjectIdentifierType &name) const |
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DataObjectIdentifierType | MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const |
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DataObjectIdentifierType | MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const |
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virtual void | PopBackInput () |
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virtual void | PopFrontInput () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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| ProcessObject () |
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virtual void | PropagateResetPipeline () |
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virtual void | PushBackInput (const DataObject *input) |
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virtual void | PushFrontInput (const DataObject *input) |
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virtual void | ReleaseInputs () |
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virtual void | RemoveInput (const DataObjectIdentifierType &key) |
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virtual void | RemoveInput (DataObjectPointerArraySizeType) |
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virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
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virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
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bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
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virtual void | RestoreInputReleaseDataFlags () |
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virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
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virtual void | SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input) |
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virtual void | SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output) |
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void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
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void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
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virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
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virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
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virtual void | SetOutput (const DataObjectIdentifierType &name, DataObject *output) |
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virtual void | SetPrimaryInput (DataObject *object) |
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virtual void | SetPrimaryOutput (DataObject *object) |
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void | SetRequiredInputNames (const NameArray &) |
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virtual void | VerifyInputInformation () const |
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virtual void | VerifyPreconditions () const |
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| ~ProcessObject () override |
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DataObject * | GetInput (DataObjectPointerArraySizeType idx) |
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const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
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DataObject * | GetPrimaryInput () |
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const DataObject * | GetPrimaryInput () const |
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virtual void | SetPrimaryInputName (const DataObjectIdentifierType &key) |
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virtual const char * | GetPrimaryInputName () const |
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DataObject * | GetOutput (const DataObjectIdentifierType &key) |
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const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
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virtual void | SetPrimaryOutputName (const DataObjectIdentifierType &key) |
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virtual const char * | GetPrimaryOutputName () const |
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DataObject * | GetOutput (DataObjectPointerArraySizeType i) |
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const DataObject * | GetOutput (DataObjectPointerArraySizeType i) const |
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DataObject * | GetPrimaryOutput () |
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const DataObject * | GetPrimaryOutput () const |
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virtual bool | GetThreaderUpdateProgress () const |
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virtual void | ThreaderUpdateProgressOn () |
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virtual void | SetThreaderUpdateProgress (bool arg) |
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| Object () |
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bool | PrintObservers (std::ostream &os, Indent indent) const |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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virtual void | SetTimeStamp (const TimeStamp &timeStamp) |
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| ~Object () override |
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virtual LightObject::Pointer | InternalClone () const |
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| LightObject () |
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virtual void | PrintHeader (std::ostream &os, Indent indent) const |
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virtual void | PrintSelf (std::ostream &os, Indent indent) const |
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virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
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virtual | ~LightObject () |
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