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itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData > Class Template Reference

#include <itkScalarChanAndVeseLevelSetFunction.h>

Detailed Description

template<typename TInputImage, typename TFeatureImage, typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
class itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >

LevelSet function that computes a speed image based on regional integrals of probabilities.

This class implements a level set function that computes the speed image by integrating values on the image domain.

Author
Mosaliganti K., Smith B., Gelas A., Gouaillard A., Megason S.

Based on the papers:

   "An active contour model without edges"
    T. Chan and L. Vese.
    In Scale-Space Theories in Computer Vision, pages 141-151, 1999.

    "Segmenting and Tracking Fluorescent Cells in Dynamic 3-D
     Microscopy With Coupled Active Surfaces"
     Dufour, Shinin, Tajbakhsh, Guillen-Aghion, Olivo-Marin
     In IEEE Transactions on Image Processing, vol. 14, No 9, Sep. 2005

This code was taken from the Insight Journal paper:

"Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
https://doi.org/10.54294/wvwmf8

That is based on the papers:

"Level Set Segmentation: Active Contours without edge"
https://doi.org/10.54294/8jk6oy

and

"Level set segmentation using coupled active surfaces"
https://doi.org/10.54294/23ugmy
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Definition at line 75 of file itkScalarChanAndVeseLevelSetFunction.h.

+ Inheritance diagram for itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >:
+ Collaboration diagram for itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >:

Public Types

using ConstFeatureIteratorType = ImageRegionConstIterator< FeatureImageType >
 
using ConstImageIteratorType = ImageRegionConstIteratorWithIndex< InputImageType >
 
using ConstPointer = SmartPointer< const Self >
 
using FeatureImageConstPointer = typename FeatureImageType::ConstPointer
 
using FeatureImageIteratorType = ImageRegionIteratorWithIndex< FeatureImageType >
 
using FeatureImageType = TFeatureImage
 
using ImageIteratorType = ImageRegionIteratorWithIndex< InputImageType >
 
using InputImageType = TInputImage
 
using ListImageType = Image< ListPixelType, Self::ImageDimension >
 
using ListPixelConstIterator = typename ListPixelType::const_iterator
 
using ListPixelIterator = typename ListPixelType::iterator
 
using ListPixelType = std::list< unsigned int >
 
using Pointer = SmartPointer< Self >
 
using Self = ScalarChanAndVeseLevelSetFunction
 
using Superclass = ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >
 

Public Member Functions

const char * GetNameOfClass () const override
 

Static Public Member Functions

static Pointer New ()
 

Static Public Attributes

static constexpr unsigned int ImageDimension = TFeatureImage::ImageDimension
 

Protected Member Functions

ScalarValueType ComputeExternalTerm (const FeaturePixelType &iValue, const FeatureIndexType &iIdx) override
 
ScalarValueType ComputeInternalTerm (const FeaturePixelType &iValue, const FeatureIndexType &iIdx) override
 
void ComputeParameters () override
 
 ScalarChanAndVeseLevelSetFunction ()
 
void UpdateSharedDataInsideParameters (const unsigned int &iId, const FeaturePixelType &iVal, const ScalarValueType &iChange) override
 
void UpdateSharedDataOutsideParameters (const unsigned int &iId, const FeaturePixelType &iVal, const ScalarValueType &iChange) override
 
void UpdateSharedDataParameters () override
 
 ~ScalarChanAndVeseLevelSetFunction () override=default
 

Member Typedef Documentation

◆ ConstFeatureIteratorType

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ConstFeatureIteratorType = ImageRegionConstIterator<FeatureImageType>

Definition at line 113 of file itkScalarRegionBasedLevelSetFunction.h.

◆ ConstImageIteratorType

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ConstImageIteratorType = ImageRegionConstIteratorWithIndex<InputImageType>

Definition at line 111 of file itkScalarRegionBasedLevelSetFunction.h.

◆ ConstPointer

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ConstPointer = SmartPointer<const Self>

Definition at line 84 of file itkScalarChanAndVeseLevelSetFunction.h.

◆ FeatureImageConstPointer

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::FeatureImageConstPointer = typename FeatureImageType::ConstPointer

Definition at line 106 of file itkScalarChanAndVeseLevelSetFunction.h.

◆ FeatureImageIteratorType

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::FeatureImageIteratorType = ImageRegionIteratorWithIndex<FeatureImageType>

Definition at line 112 of file itkScalarRegionBasedLevelSetFunction.h.

◆ FeatureImageType

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::FeatureImageType = TFeatureImage

Definition at line 105 of file itkScalarChanAndVeseLevelSetFunction.h.

◆ ImageIteratorType

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ImageIteratorType = ImageRegionIteratorWithIndex<InputImageType>

Definition at line 110 of file itkScalarRegionBasedLevelSetFunction.h.

◆ InputImageType

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::InputImageType = TInputImage

Definition at line 94 of file itkScalarChanAndVeseLevelSetFunction.h.

◆ ListImageType

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ListImageType = Image<ListPixelType, Self::ImageDimension>

Definition at line 118 of file itkScalarRegionBasedLevelSetFunction.h.

◆ ListPixelConstIterator

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ListPixelConstIterator = typename ListPixelType::const_iterator

Definition at line 116 of file itkScalarRegionBasedLevelSetFunction.h.

◆ ListPixelIterator

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ListPixelIterator = typename ListPixelType::iterator

Definition at line 117 of file itkScalarRegionBasedLevelSetFunction.h.

◆ ListPixelType

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ListPixelType = std::list<unsigned int>

Definition at line 115 of file itkScalarRegionBasedLevelSetFunction.h.

◆ Pointer

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::Pointer = SmartPointer<Self>

Definition at line 83 of file itkScalarChanAndVeseLevelSetFunction.h.

◆ Self

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::Self = ScalarChanAndVeseLevelSetFunction

Definition at line 81 of file itkScalarChanAndVeseLevelSetFunction.h.

◆ Superclass

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
using itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::Superclass = ScalarRegionBasedLevelSetFunction<TInputImage, TFeatureImage, TSharedData>

Definition at line 82 of file itkScalarChanAndVeseLevelSetFunction.h.

Constructor & Destructor Documentation

◆ ScalarChanAndVeseLevelSetFunction()

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ScalarChanAndVeseLevelSetFunction ( )
inlineprotected

Definition at line 134 of file itkScalarChanAndVeseLevelSetFunction.h.

◆ ~ScalarChanAndVeseLevelSetFunction()

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::~ScalarChanAndVeseLevelSetFunction ( )
overrideprotecteddefault

Member Function Documentation

◆ ComputeExternalTerm()

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
ScalarValueType itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ComputeExternalTerm ( const FeaturePixelType &  iValue,
const FeatureIndexType &  iIdx 
)
overrideprotected

◆ ComputeInternalTerm()

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
ScalarValueType itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ComputeInternalTerm ( const FeaturePixelType &  iValue,
const FeatureIndexType &  iIdx 
)
overrideprotected

◆ ComputeParameters()

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
void itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ComputeParameters ( )
overrideprotected

◆ GetNameOfClass()

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
const char * itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::GetNameOfClass ( ) const
override

◆ New()

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
static Pointer itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::New ( )
static

Method for creation through the object factory.

◆ UpdateSharedDataInsideParameters()

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
void itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::UpdateSharedDataInsideParameters ( const unsigned int &  iId,
const FeaturePixelType &  iVal,
const ScalarValueType &  iChange 
)
overrideprotected

◆ UpdateSharedDataOutsideParameters()

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
void itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::UpdateSharedDataOutsideParameters ( const unsigned int &  iId,
const FeaturePixelType &  iVal,
const ScalarValueType &  iChange 
)
overrideprotected

◆ UpdateSharedDataParameters()

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
void itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::UpdateSharedDataParameters ( )
overrideprotected

Member Data Documentation

◆ ImageDimension

template<typename TInputImage , typename TFeatureImage , typename TSharedData = ConstrainedRegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, ScalarChanAndVeseLevelSetFunctionData<TInputImage, TFeatureImage>>>
constexpr unsigned int itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ImageDimension = TFeatureImage::ImageDimension
staticconstexpr

Definition at line 92 of file itkScalarChanAndVeseLevelSetFunction.h.


The documentation for this class was generated from the following file: