itkHistogramThresholdImageFilter.h

Go to the documentation of this file.

/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         https://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
 
#ifndef itkHistogramThresholdImageFilter_h
#define itkHistogramThresholdImageFilter_h
 
#include "itkImageToImageFilter.h"
#include "itkImageToHistogramFilter.h"
#include "itkHistogram.h"
#include "itkHistogramThresholdCalculator.h"
 
namespace itk
{

 
template <typename TInputImage, typename TOutputImage, typename TMaskImage = TOutputImage>
class ITK_TEMPLATE_EXPORT HistogramThresholdImageFilter : public ImageToImageFilter<TInputImage, TOutputImage>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(HistogramThresholdImageFilter);

  using Self = HistogramThresholdImageFilter;
  using Superclass = ImageToImageFilter<TInputImage, TOutputImage>;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;

  itkNewMacro(Self);

  itkOverrideGetNameOfClassMacro(HistogramThresholdImageFilter);
 
  using InputImageType = TInputImage;
  using OutputImageType = TOutputImage;
  using MaskImageType = TMaskImage;

  using InputPixelType = typename InputImageType::PixelType;
  using OutputPixelType = typename OutputImageType::PixelType;
  using MaskPixelType = typename MaskImageType::PixelType;

  using InputImagePointer = typename InputImageType::Pointer;
  using OutputImagePointer = typename OutputImageType::Pointer;
  using MaskImagePointer = typename MaskImageType::Pointer;
 
  using InputSizeType = typename InputImageType::SizeType;
  using InputIndexType = typename InputImageType::IndexType;
  using InputImageRegionType = typename InputImageType::RegionType;
  using OutputSizeType = typename OutputImageType::SizeType;
  using OutputIndexType = typename OutputImageType::IndexType;
  using OutputImageRegionType = typename OutputImageType::RegionType;
  using MaskSizeType = typename MaskImageType::SizeType;
  using MaskIndexType = typename MaskImageType::IndexType;
  using MaskImageRegionType = typename MaskImageType::RegionType;
 
  using ValueType = typename NumericTraits<InputPixelType>::ValueType;
  using ValueRealType = typename NumericTraits<ValueType>::RealType;
  using HistogramType = Statistics::Histogram<ValueRealType>;
  using HistogramPointer = typename HistogramType::Pointer;
  using HistogramConstPointer = typename HistogramType::ConstPointer;
  using HistogramSizeType = typename HistogramType::SizeType;
  using HistogramMeasurementType = typename HistogramType::MeasurementType;
  using HistogramMeasurementVectorType = typename HistogramType::MeasurementVectorType;
  using CalculatorType = HistogramThresholdCalculator<HistogramType, InputPixelType>;
  using CalculatorPointer = typename CalculatorType::Pointer;
 
  using HistogramGeneratorType = Statistics::ImageToHistogramFilter<InputImageType>;
  using HistogramGeneratorPointer = typename HistogramGeneratorType::Pointer;

  static constexpr unsigned int InputImageDimension = InputImageType::ImageDimension;
  static constexpr unsigned int OutputImageDimension = OutputImageType::ImageDimension;
  static constexpr unsigned int MaskImageDimension = MaskImageType::ImageDimension;

  itkSetInputMacro(MaskImage, TMaskImage);
  itkGetInputMacro(MaskImage, TMaskImage);

  void
  SetInput1(const TInputImage * input)
  {
    this->SetInput(input);
  }

  void
  SetInput2(const TMaskImage * input)
  {
    this->SetMaskImage(input);
  }

  itkSetMacro(OutsideValue, OutputPixelType);

  itkGetConstMacro(OutsideValue, OutputPixelType);

  itkSetMacro(InsideValue, OutputPixelType);

  itkGetConstMacro(InsideValue, OutputPixelType);

  itkSetMacro(NumberOfHistogramBins, unsigned int);
  itkGetConstMacro(NumberOfHistogramBins, unsigned int);

  itkSetMacro(AutoMinimumMaximum, bool);
  itkGetConstMacro(AutoMinimumMaximum, bool);
  itkBooleanMacro(AutoMinimumMaximum);

  itkSetMacro(MaskOutput, bool);
  itkGetConstMacro(MaskOutput, bool);
  itkBooleanMacro(MaskOutput);

  itkSetMacro(MaskValue, MaskPixelType);
  itkGetConstMacro(MaskValue, MaskPixelType);

  itkGetConstMacro(Threshold, InputPixelType);

  itkSetObjectMacro(Calculator, CalculatorType);
  itkGetModifiableObjectMacro(Calculator, CalculatorType);
 
  itkConceptMacro(OutputEqualityComparableCheck, (Concept::EqualityComparable<OutputPixelType>));
  itkConceptMacro(InputOStreamWritableCheck, (Concept::OStreamWritable<InputPixelType>));
  itkConceptMacro(OutputOStreamWritableCheck, (Concept::OStreamWritable<OutputPixelType>));
 
protected:
  HistogramThresholdImageFilter();
  ~HistogramThresholdImageFilter() override = default;
  void
  PrintSelf(std::ostream & os, Indent indent) const override;
 
  void
  GenerateInputRequestedRegion() override;
  void
  GenerateData() override;
 
  void
  VerifyPreconditions() const override
  {
    Superclass::VerifyPreconditions();
    if (m_Calculator.IsNull())
    {
      itkExceptionMacro("No threshold calculator set.");
    }
  }
 
private:
  void
  SetUpHistogramGenerator(HistogramGeneratorPointer histogramGenerator);
 
  OutputPixelType   m_InsideValue{};
  OutputPixelType   m_OutsideValue{};
  InputPixelType    m_Threshold{};
  MaskPixelType     m_MaskValue{};
  CalculatorPointer m_Calculator{};
  unsigned int      m_NumberOfHistogramBins{ 256 };
  bool              m_AutoMinimumMaximum{};
  bool              m_MaskOutput{ true };
};
 
} // end namespace itk
 
#ifndef ITK_MANUAL_INSTANTIATION
#  include "itkHistogramThresholdImageFilter.hxx"
#endif
 
#endif