#include <itkMRCHeaderObject.h>
plain old data structure of the MRC header as used by IMOD. This header must be 1024 bytes.
The structure of the MRC header taken from: https://bio3d.colorado.edu/imod/doc/mrc_format.txt with permission from David Mastronarde on 8/21/2009
Definition at line 66 of file itkMRCHeaderObject.h.
Public Attributes | |
float | alpha |
float | amax |
float | amean |
float | amin |
float | beta |
char | cmap [4] |
int16_t | creatid |
float | gamma |
int16_t | idtype |
int16_t | ispg |
char | label [10][80] |
int16_t | lens |
int32_t | mapc |
int32_t | mapr |
int32_t | maps |
int32_t | mode |
int32_t | mx |
int32_t | my |
int32_t | mz |
int16_t | nd1 |
int16_t | nd2 |
int32_t | next |
int16_t | nint |
int32_t | nlabl |
int8_t | notused1 [30] |
int8_t | notused2 [28] |
int16_t | nreal |
int16_t | nsymbt |
int32_t | nx |
int32_t | nxstart |
int32_t | ny |
int32_t | nystart |
int32_t | nz |
int32_t | nzstart |
float | rms |
char | stamp [4] |
float | tiltangles [6] |
int16_t | vd1 |
int16_t | vd2 |
float | xlen |
float | xorg |
float | ylen |
float | yorg |
float | zlen |
float | zorg |
float itk::MRCHeaderObject::Header::alpha |
cell angles (ignored)
Definition at line 99 of file itkMRCHeaderObject.h.
float itk::MRCHeaderObject::Header::amax |
Maximum pixel value.
Definition at line 110 of file itkMRCHeaderObject.h.
float itk::MRCHeaderObject::Header::amean |
Mean pixel value.
Definition at line 111 of file itkMRCHeaderObject.h.
float itk::MRCHeaderObject::Header::amin |
Minimum pixel value.
Definition at line 109 of file itkMRCHeaderObject.h.
float itk::MRCHeaderObject::Header::beta |
Definition at line 100 of file itkMRCHeaderObject.h.
char itk::MRCHeaderObject::Header::cmap[4] |
Contains "MAP "
Definition at line 166 of file itkMRCHeaderObject.h.
int16_t itk::MRCHeaderObject::Header::creatid |
Creator ID
Definition at line 117 of file itkMRCHeaderObject.h.
float itk::MRCHeaderObject::Header::gamma |
Definition at line 101 of file itkMRCHeaderObject.h.
int16_t itk::MRCHeaderObject::Header::idtype |
Definition at line 150 of file itkMRCHeaderObject.h.
int16_t itk::MRCHeaderObject::Header::ispg |
image type
Definition at line 113 of file itkMRCHeaderObject.h.
char itk::MRCHeaderObject::Header::label[10][80] |
10 labels of 80 characters.
Definition at line 173 of file itkMRCHeaderObject.h.
int16_t itk::MRCHeaderObject::Header::lens |
Definition at line 152 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::mapc |
map column 1=x,2=y,3=z. (ignored)
Definition at line 103 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::mapr |
map row 1=x,2=y,3=z. (ignored)
Definition at line 104 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::maps |
map section 1=x,2=y,3=z. (ignored)
Definition at line 105 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::mode |
Types of pixel in image. Values used by IMOD: 0 = unsigned bytes, 1 = short integers (16 bits), 2 = float, 3 = short * 2, (used for complex data) 4 = float * 2, (used for complex data) 6 = unsigned 16-bit integers (non-standard) 16 = unsigned char * 3 (for rgb data, non-standard)
Definition at line 81 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::mx |
Grid size in X, Y, and Z
Definition at line 89 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::my |
Definition at line 90 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::mz |
Definition at line 91 of file itkMRCHeaderObject.h.
int16_t itk::MRCHeaderObject::Header::nd1 |
Definition at line 153 of file itkMRCHeaderObject.h.
int16_t itk::MRCHeaderObject::Header::nd2 |
Definition at line 154 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::next |
number of bytes in extended header
Definition at line 116 of file itkMRCHeaderObject.h.
int16_t itk::MRCHeaderObject::Header::nint |
Definition at line 130 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::nlabl |
Number of labels with useful data.
Definition at line 172 of file itkMRCHeaderObject.h.
int8_t itk::MRCHeaderObject::Header::notused1[30] |
extra data (not used)
Definition at line 119 of file itkMRCHeaderObject.h.
int8_t itk::MRCHeaderObject::Header::notused2[28] |
extra data (not used)
Definition at line 147 of file itkMRCHeaderObject.h.
int16_t itk::MRCHeaderObject::Header::nreal |
Definition at line 132 of file itkMRCHeaderObject.h.
int16_t itk::MRCHeaderObject::Header::nsymbt |
space group number
Definition at line 114 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::nx |
Number of Columns
Definition at line 68 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::nxstart |
Starting point of sub image. (ignored)
Definition at line 84 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::ny |
Number of Rows
Definition at line 69 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::nystart |
Definition at line 85 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::nz |
Number of Sections
Definition at line 70 of file itkMRCHeaderObject.h.
int32_t itk::MRCHeaderObject::Header::nzstart |
Definition at line 86 of file itkMRCHeaderObject.h.
float itk::MRCHeaderObject::Header::rms |
Definition at line 169 of file itkMRCHeaderObject.h.
char itk::MRCHeaderObject::Header::stamp[4] |
First two bytes have 17 and 17 for big-endian or 68 and 68 for little-endian
Definition at line 167 of file itkMRCHeaderObject.h.
float itk::MRCHeaderObject::Header::tiltangles[6] |
Definition at line 159 of file itkMRCHeaderObject.h.
int16_t itk::MRCHeaderObject::Header::vd1 |
Definition at line 155 of file itkMRCHeaderObject.h.
int16_t itk::MRCHeaderObject::Header::vd2 |
Definition at line 156 of file itkMRCHeaderObject.h.
float itk::MRCHeaderObject::Header::xlen |
Cell size; pixel spacing = xlen/mx
Definition at line 94 of file itkMRCHeaderObject.h.
float itk::MRCHeaderObject::Header::xorg |
Definition at line 162 of file itkMRCHeaderObject.h.
float itk::MRCHeaderObject::Header::ylen |
Definition at line 95 of file itkMRCHeaderObject.h.
float itk::MRCHeaderObject::Header::yorg |
Definition at line 163 of file itkMRCHeaderObject.h.
float itk::MRCHeaderObject::Header::zlen |
Definition at line 96 of file itkMRCHeaderObject.h.
float itk::MRCHeaderObject::Header::zorg |
Definition at line 164 of file itkMRCHeaderObject.h.