#include <itkBinaryMask3DMeshSource.h>

Detailed Description

template<typename TInputImage, typename TOutputMesh>
class itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >

: This class tries to construct a 3D mesh surface based on a binary mask. It can be used to integrate a region-based segmentation method and a deformable model into one hybrid framework.

: To construct a mesh, we need to construct elements in a voxel and combine those elements later to form the final mesh. Before go through every voxel in the 3D volume, we first construct 2 look up tables. The index of these 2 tables are the on-off combination of the 8 nodes that form the voxel. So both of these tables has the size of $2^8$ bytes. According to previous work, all those $2^8$ combination of the nodes can be grouped into 16 final combinations. In the first table, we record the final combination that can be transformed from the current combination. The entries of the second table are made up of the transforming sequence that is necessary for the current combination transform to one of the final combinations. For more details see [69].

: We then go through the 3D volume voxel by voxel, using those two tables we have defined to construct elements within each voxel. We then merge all these mesh elements into one 3D mesh.

PARAMETERS: The ObjectValue parameter is used to identify the object. In most applications, pixels in the object region are assigned to "1", so the default value of ObjectValue is set to "1"

INPUT: The input should be a 3D binary image.

Examples: Examples/Filtering/SurfaceExtraction.cxx.

Definition at line 69 of file itkBinaryMask3DMeshSource.h.

Inheritance diagram for itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >:

Collaboration diagram for itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >:

Public Types
using	CellsContainer = typename OutputMeshType::CellsContainer

using	CellsContainerPointer = typename OutputMeshType::CellsContainerPointer

using	CellTraits = typename OutputMeshType::CellTraits

using	ConstPointer = SmartPointer<const Self>

using	doubleVector = CovariantVector<double, 2>

using	IdentifierType = itk::IdentifierType

using	InputImageConstPointer = typename InputImageType::ConstPointer

using	InputImageIndexType = typename InputImageType::IndexType

using	InputImageIterator = ImageRegionConstIterator<InputImageType>

using	InputImagePointer = typename InputImageType::Pointer

using	InputImageType = TInputImage

using	InputPixelType = typename InputImageType::PixelType

using	intVector = CovariantVector<int, 2>

using	OMeshTraits = typename OutputMeshType::MeshTraits

using	OPixelType = typename OMeshTraits::PixelType

using	OPointType = typename OutputMeshType::PointType

using	OriginType = typename InputImageType::PointType

using	OutputMeshPointer = typename OutputMeshType::Pointer

using	OutputMeshType = TOutputMesh

using	Pointer = SmartPointer<Self>

using	PointsContainer = typename OutputMeshType::PointsContainer

using	PointsContainerPointer = typename OutputMeshType::PointsContainerPointer

using	RegionType = typename InputImageType::RegionType

using	Self = BinaryMask3DMeshSource

using	SizeType = typename InputImageType::SizeType

using	SizeValueType = itk::SizeValueType

using	SpacingType = typename InputImageType::SpacingType

using	Superclass = ImageToMeshFilter<TInputImage, TOutputMesh>

using	TCellInterface = CellInterface<OPixelType, CellTraits>

using	TriCell = TriangleCell<TCellInterface>

using	TriCellAutoPointer = typename TriCell::SelfAutoPointer

Public Types inherited from itk::ImageToMeshFilter< TInputImage, TOutputMesh >
using	ConstPointer = SmartPointer<const Self>

using	DataObjectPointerArraySizeType = ProcessObject::DataObjectPointerArraySizeType

using	InputImageConstPointer = typename InputImageType::ConstPointer

using	InputImagePixelType = typename InputImageType::PixelType

using	InputImagePointer = typename InputImageType::Pointer

using	InputImageRegionType = typename InputImageType::RegionType

using	InputImageType = TInputImage

using	OutputMeshPointer = typename OutputMeshType::Pointer

using	OutputMeshType = TOutputMesh

using	Pointer = SmartPointer<Self>

using	Self = ImageToMeshFilter

using	Superclass = MeshSource<TOutputMesh>

Public Types inherited from itk::MeshSource< TOutputMesh >
using	ConstPointer = SmartPointer<const Self>

using	DataObjectIdentifierType = Superclass::DataObjectIdentifierType

using	DataObjectPointer = DataObject::Pointer

using	OutputMeshPointer = typename OutputMeshType::Pointer

using	OutputMeshType = TOutputMesh

using	Pointer = SmartPointer<Self>

using	Self = MeshSource

using	Superclass = ProcessObject

using	DataObjectPointerArraySizeType = ProcessObject::DataObjectPointerArraySizeType

Public Types inherited from itk::ProcessObject
using	ConstPointer = SmartPointer<const Self>

using	DataObjectIdentifierType = DataObject::DataObjectIdentifierType

using	DataObjectPointer = DataObject::Pointer

using	DataObjectPointerArray = std::vector<DataObjectPointer>

using	DataObjectPointerArraySizeType = DataObjectPointerArray::size_type

using	MultiThreaderType = MultiThreaderBase

using	NameArray = std::vector<DataObjectIdentifierType>

using	Pointer = SmartPointer<Self>

using	Self = ProcessObject

using	Superclass = Object

Public Types inherited from itk::Object
using	ConstPointer = SmartPointer<const Self>

using	Pointer = SmartPointer<Self>

using	Self = Object

using	Superclass = LightObject

Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer<const Self>

using	Pointer = SmartPointer<Self>

using	Self = LightObject

Public Member Functions
virtual::itk::LightObject::Pointer	CreateAnother () const

const char *	GetNameOfClass () const override

virtual SizeValueType	GetNumberOfCells () const

virtual SizeValueType	GetNumberOfNodes () const

virtual const RegionType &	GetRegionOfInterest () const

virtual void	SetInput (const InputImageType *image)

void	SetInput (unsigned int idx, const InputImageType *input)

virtual void	SetObjectValue (InputPixelType _arg)

void	SetRegionOfInterest (const RegionType &iRegion)

Public Member Functions inherited from itk::ImageToMeshFilter< TInputImage, TOutputMesh >
void	GenerateOutputInformation () override

const char *	GetNameOfClass () const override

OutputMeshType *	GetOutput ()

DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType idx) override

void	SetInput (unsigned int idx, const InputImageType *input)

void	SetInput (const InputImageType *input)

const InputImageType *	GetInput (unsigned int idx)

const InputImageType *	GetInput ()

Public Member Functions inherited from itk::MeshSource< TOutputMesh >
virtual::itk::LightObject::Pointer	CreateAnother () const

const char *	GetNameOfClass () const override

OutputMeshType *	GetOutput ()

OutputMeshType *	GetOutput (unsigned int idx)

virtual void	GraftNthOutput (unsigned int idx, DataObject *graft)

virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *graft)

virtual void	GraftOutput (DataObject *graft)

void	SetOutput (TOutputMesh *output)

virtual void	SetOutput (const DataObjectIdentifierType &name, DataObject *output)

DataObjectPointer	MakeOutput (DataObjectPointerArraySizeType idx) override

virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)

Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

virtual void	EnlargeOutputRequestedRegion (DataObject *output)

virtual const bool &	GetAbortGenerateData () const

DataObjectPointerArray	GetIndexedInputs ()

DataObjectPointerArray	GetIndexedOutputs ()

NameArray	GetInputNames () const

DataObjectPointerArray	GetInputs ()

MultiThreaderType *	GetMultiThreader () const

const char *	GetNameOfClass () const override

DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const

DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const

DataObjectPointerArraySizeType	GetNumberOfInputs () const

DataObjectPointerArraySizeType	GetNumberOfOutputs () const

virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const

NameArray	GetOutputNames () const

DataObjectPointerArray	GetOutputs ()

virtual float	GetProgress () const

NameArray	GetRequiredInputNames () const

bool	HasInput (const DataObjectIdentifierType &key) const

bool	HasOutput (const DataObjectIdentifierType &key) const

void	IncrementProgress (float increment)

virtual void	PrepareOutputs ()

virtual void	PropagateRequestedRegion (DataObject *output)

virtual void	ResetPipeline ()

virtual void	SetAbortGenerateData (bool _arg)

void	SetMultiThreader (MultiThreaderType *threader)

virtual void	Update ()

virtual void	UpdateLargestPossibleRegion ()

virtual void	UpdateOutputData (DataObject *output)

virtual void	UpdateOutputInformation ()

void	UpdateProgress (float progress)

virtual void	SetReleaseDataFlag (bool val)

virtual bool	GetReleaseDataFlag () const

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)

virtual const bool &	GetReleaseDataBeforeUpdateFlag () const

virtual void	ReleaseDataBeforeUpdateFlagOn ()

virtual void	ReleaseDataBeforeUpdateFlagOff ()

virtual void	SetNumberOfWorkUnits (ThreadIdType _arg)

virtual const ThreadIdType &	GetNumberOfWorkUnits () const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *cmd) const

unsigned long	AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const

LightObject::Pointer	CreateAnother () const override

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary ()

const MetaDataDictionary &	GetMetaDataDictionary () const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

void	Register () const override

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag) const

void	SetDebug (bool debugFlag) const

void	SetReferenceCount (int) override

void	UnRegister () const noexcept override

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

void	SetMetaDataDictionary (MetaDataDictionary &&rrhs)

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
Pointer	Clone () const

virtual void	Delete ()

virtual int	GetReferenceCount () const

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::MeshSource< TOutputMesh >
static Pointer	New ()

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool val)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Protected Member Functions
	BinaryMask3DMeshSource ()

void	GenerateData () override

void	GenerateOutputInformation () override

void	PrintSelf (std::ostream &os, Indent indent) const override

	~BinaryMask3DMeshSource () override

Protected Member Functions inherited from itk::ImageToMeshFilter< TInputImage, TOutputMesh >
	ImageToMeshFilter ()

	~ImageToMeshFilter () override=default

Protected Member Functions inherited from itk::MeshSource< TOutputMesh >
void	GenerateInputRequestedRegion () override

	MeshSource ()

void	PrintSelf (std::ostream &os, Indent indent) const override

	~MeshSource () override=default

Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)

void	AddOptionalInputName (const DataObjectIdentifierType &)

void	AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

virtual void	AddOutput (DataObject *output)

bool	AddRequiredInputName (const DataObjectIdentifierType &)

bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

virtual void	CacheInputReleaseDataFlags ()

virtual void	GenerateOutputRequestedRegion (DataObject *output)

DataObject *	GetInput (const DataObjectIdentifierType &key)

const DataObject *	GetInput (const DataObjectIdentifierType &key) const

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const

bool	IsIndexedInputName (const DataObjectIdentifierType &) const

bool	IsIndexedOutputName (const DataObjectIdentifierType &) const

bool	IsRequiredInputName (const DataObjectIdentifierType &) const

DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const

DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const

DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const

DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const

virtual void	PopBackInput ()

virtual void	PopFrontInput ()

void	PrintSelf (std::ostream &os, Indent indent) const override

	ProcessObject ()

virtual void	PropagateResetPipeline ()

virtual void	PushBackInput (const DataObject *input)

virtual void	PushFrontInput (const DataObject *input)

virtual void	ReleaseInputs ()

virtual void	RemoveInput (const DataObjectIdentifierType &key)

virtual void	RemoveInput (DataObjectPointerArraySizeType)

virtual void	RemoveOutput (const DataObjectIdentifierType &key)

virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)

bool	RemoveRequiredInputName (const DataObjectIdentifierType &)

virtual void	RestoreInputReleaseDataFlags ()

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input)

virtual void	SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output)

void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)

void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)

virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)

virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)

virtual void	SetPrimaryInput (DataObject *object)

virtual void	SetPrimaryOutput (DataObject *object)

void	SetRequiredInputNames (const NameArray &)

virtual void	VerifyInputInformation () const

virtual void	VerifyPreconditions () const

	~ProcessObject () override

DataObject *	GetInput (DataObjectPointerArraySizeType idx)

const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryInput ()

const DataObject *	GetPrimaryInput () const

virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryInputName () const

DataObject *	GetOutput (const DataObjectIdentifierType &key)

const DataObject *	GetOutput (const DataObjectIdentifierType &key) const

virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryOutputName () const

DataObject *	GetOutput (DataObjectPointerArraySizeType i)

const DataObject *	GetOutput (DataObjectPointerArraySizeType i) const

DataObject *	GetPrimaryOutput ()

const DataObject *	GetPrimaryOutput () const

virtual bool	GetThreaderUpdateProgress () const

virtual void	ThreaderUpdateProgressOn ()

virtual void	ThreaderUpdateProgressOff ()

virtual void	SetThreaderUpdateProgress (bool arg)

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &timeStamp)

	~Object () override

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
RegionType	m_RegionOfInterest {}

bool	m_RegionOfInterestProvidedByUser { false }

Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime {}

bool	m_Updating {}

Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount {}

Private Types
using	InputImageSizeType = typename InputImageType::SizeType

Private Member Functions
void	AddCells (unsigned char celltype, unsigned char celltran, int index)

void	AddNodes (int index, unsigned char nodesid, IdentifierType globalnodesid, IdentifierType currentrowtmp, IdentifierType currentframetmp)

void	CellTransfer (unsigned char *nodesid, unsigned char celltran)

void	CreateMesh ()

void	InitializeLUT ()

void	inverse (unsigned char *x)

IdentifierType	SearchThroughLastFrame (int index, int start, int end)

IdentifierType	SearchThroughLastRow (int index, int start, int end)

void	XFlip (unsigned char *x)

void	XRotation (unsigned char *x)

void	YFlip (unsigned char *x)

void	YRotation (unsigned char *x)

void	ZFlip (unsigned char *x)

void	ZRotation (unsigned char *x)

Private Attributes
unsigned char	m_AvailableNodes [14] {}

int	m_CellLimit { 4000 }

int	m_ColFlag { 0 }

IdentifierType **	m_CurrentFrame { nullptr }

int	m_CurrentFrameIndex { 0 }

int	m_CurrentFrameNum { 2000 }

IdentifierType **	m_CurrentRow { nullptr }

int	m_CurrentRowIndex { 0 }

int	m_CurrentRowNum { 200 }

IdentifierType	m_CurrentVoxel [14] {}

int	m_FrameFlag { 0 }

int	m_ImageDepth { 0 }

int	m_ImageHeight { 0 }

int	m_ImageWidth { 0 }

const InputImageType *	m_InputImage {}

IdentifierType **	m_LastFrame { nullptr }

int	m_LastFrameIndex { 0 }

int	m_LastFrameNum { 0 }

IdentifierType **	m_LastRow { nullptr }

int	m_LastRowIndex { 0 }

int	m_LastRowNum { 0 }

IdentifierType	m_LastVoxel [14] {}

int	m_LastVoxelIndex { 0 }

double	m_LocationOffset [14][3] {}

unsigned char	m_LUT [256][2] {}

int	m_NodeLimit { 2000 }

SizeValueType	m_NumberOfCells { 0 }

SizeValueType	m_NumberOfNodes { 0 }

InputPixelType	m_ObjectValue {}

OutputMeshType *	m_OutputMesh {}

unsigned char	m_PointFound { 0 }

int	m_RowFlag { 0 }

Additional Inherited Members
Static Protected Member Functions inherited from itk::ProcessObject
template<typename TSourceObject>
static void	MakeRequiredOutputs (TSourceObject &sourceObject, const DataObjectPointerArraySizeType numberOfRequiredOutputs)

static constexpr float	progressFixedToFloat (uint32_t fixed)

static uint32_t	progressFloatToFixed (float f)

Member Typedef Documentation

◆ CellsContainer

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::CellsContainer = typename OutputMeshType::CellsContainer

Definition at line 98 of file itkBinaryMask3DMeshSource.h.

◆ CellsContainerPointer

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::CellsContainerPointer = typename OutputMeshType::CellsContainerPointer

Definition at line 97 of file itkBinaryMask3DMeshSource.h.

◆ CellTraits

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::CellTraits = typename OutputMeshType::CellTraits

Definition at line 94 of file itkBinaryMask3DMeshSource.h.

◆ ConstPointer

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::ConstPointer = SmartPointer<const Self>

Definition at line 78 of file itkBinaryMask3DMeshSource.h.

◆ doubleVector

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::doubleVector = CovariantVector<double, 2>

Definition at line 99 of file itkBinaryMask3DMeshSource.h.

◆ IdentifierType

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::IdentifierType = itk::IdentifierType

Definition at line 123 of file itkBinaryMask3DMeshSource.h.

◆ InputImageConstPointer

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::InputImageConstPointer = typename InputImageType::ConstPointer

Definition at line 111 of file itkBinaryMask3DMeshSource.h.

◆ InputImageIndexType

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::InputImageIndexType = typename InputImageType::IndexType

Type definition for the classified image index type.

Definition at line 119 of file itkBinaryMask3DMeshSource.h.

◆ InputImageIterator

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::InputImageIterator = ImageRegionConstIterator<InputImageType>

Definition at line 121 of file itkBinaryMask3DMeshSource.h.

◆ InputImagePointer

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::InputImagePointer = typename InputImageType::Pointer

Definition at line 110 of file itkBinaryMask3DMeshSource.h.

◆ InputImageSizeType

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::InputImageSizeType = typename InputImageType::SizeType

private

Definition at line 167 of file itkBinaryMask3DMeshSource.h.

◆ InputImageType

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::InputImageType = TInputImage

Input Image Type Definition.

Definition at line 109 of file itkBinaryMask3DMeshSource.h.

◆ InputPixelType

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::InputPixelType = typename InputImageType::PixelType

Definition at line 112 of file itkBinaryMask3DMeshSource.h.

◆ intVector

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::intVector = CovariantVector<int, 2>

Definition at line 100 of file itkBinaryMask3DMeshSource.h.

◆ OMeshTraits

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::OMeshTraits = typename OutputMeshType::MeshTraits

Definition at line 88 of file itkBinaryMask3DMeshSource.h.

◆ OPixelType

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::OPixelType = typename OMeshTraits::PixelType

Definition at line 90 of file itkBinaryMask3DMeshSource.h.

◆ OPointType

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::OPointType = typename OutputMeshType::PointType

Definition at line 89 of file itkBinaryMask3DMeshSource.h.

◆ OriginType

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::OriginType = typename InputImageType::PointType

Definition at line 114 of file itkBinaryMask3DMeshSource.h.

◆ OutputMeshPointer

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::OutputMeshPointer = typename OutputMeshType::Pointer

Some convenient type alias.

Definition at line 93 of file itkBinaryMask3DMeshSource.h.

◆ OutputMeshType

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::OutputMeshType = TOutputMesh

Hold on to the type information specified by the template parameters.

Definition at line 87 of file itkBinaryMask3DMeshSource.h.

◆ Pointer

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::Pointer = SmartPointer<Self>

Definition at line 77 of file itkBinaryMask3DMeshSource.h.

◆ PointsContainer

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::PointsContainer = typename OutputMeshType::PointsContainer

Definition at line 96 of file itkBinaryMask3DMeshSource.h.

◆ PointsContainerPointer

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::PointsContainerPointer = typename OutputMeshType::PointsContainerPointer

Definition at line 95 of file itkBinaryMask3DMeshSource.h.

◆ RegionType

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::RegionType = typename InputImageType::RegionType

Definition at line 115 of file itkBinaryMask3DMeshSource.h.

◆ Self

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::Self = BinaryMask3DMeshSource

Standard "Self" type alias.

Definition at line 75 of file itkBinaryMask3DMeshSource.h.

◆ SizeType

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::SizeType = typename InputImageType::SizeType

Definition at line 116 of file itkBinaryMask3DMeshSource.h.

◆ SizeValueType

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::SizeValueType = itk::SizeValueType

Definition at line 124 of file itkBinaryMask3DMeshSource.h.

◆ SpacingType

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::SpacingType = typename InputImageType::SpacingType

Definition at line 113 of file itkBinaryMask3DMeshSource.h.

◆ Superclass

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::Superclass = ImageToMeshFilter<TInputImage, TOutputMesh>

Definition at line 76 of file itkBinaryMask3DMeshSource.h.

◆ TCellInterface

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::TCellInterface = CellInterface<OPixelType, CellTraits>

Define the triangular cell types which forms the surface of the model and will be used in FEM application.

Definition at line 104 of file itkBinaryMask3DMeshSource.h.

◆ TriCell

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::TriCell = TriangleCell<TCellInterface>

Definition at line 105 of file itkBinaryMask3DMeshSource.h.

◆ TriCellAutoPointer

template<typename TInputImage, typename TOutputMesh>

using itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::TriCellAutoPointer = typename TriCell::SelfAutoPointer

Definition at line 106 of file itkBinaryMask3DMeshSource.h.

Constructor & Destructor Documentation

◆ BinaryMask3DMeshSource()

template<typename TInputImage, typename TOutputMesh>

itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::BinaryMask3DMeshSource ( )

protected

Referenced by GetNameOfClass().

◆ ~BinaryMask3DMeshSource()

template<typename TInputImage, typename TOutputMesh>

itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::~BinaryMask3DMeshSource ( )

overrideprotected

Member Function Documentation

◆ AddCells()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::AddCells	(	unsigned char	celltype,
		unsigned char	celltran,
		int	index )

private

◆ AddNodes()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::AddNodes	(	int	index,
		unsigned char *	nodesid,
		IdentifierType *	globalnodesid,
		IdentifierType **	currentrowtmp,
		IdentifierType **	currentframetmp )

private

◆ CellTransfer()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::CellTransfer	(	unsigned char *	nodesid,
		unsigned char	celltran )

private

◆ CreateAnother()

template<typename TInputImage, typename TOutputMesh>

virtual::itk::LightObject::Pointer itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::CreateAnother ( ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightObject.

◆ CreateMesh()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::CreateMesh ( )

private

◆ GenerateData()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::GenerateData ( )

overrideprotectedvirtual

This method causes the filter to generate its output.

Reimplemented from itk::ProcessObject.

◆ GenerateOutputInformation()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::GenerateOutputInformation ( )

inlineoverrideprotectedvirtual

Generate the information describing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.

Reimplemented from itk::ProcessObject.

Definition at line 163 of file itkBinaryMask3DMeshSource.h.

◆ GetNameOfClass()

template<typename TInputImage, typename TOutputMesh>

const char * itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::GetNameOfClass ( ) const

overridevirtual

See also: LightObject::GetNameOfClass()

Reimplemented from itk::LightObject.

References BinaryMask3DMeshSource().

◆ GetNumberOfCells()

template<typename TInputImage, typename TOutputMesh>

virtual SizeValueType itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::GetNumberOfCells ( ) const

virtual

References itk::ImageToMeshFilter< TInputImage, TOutputMesh >::SetInput().

◆ GetNumberOfNodes()

template<typename TInputImage, typename TOutputMesh>

virtual SizeValueType itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::GetNumberOfNodes ( ) const

virtual

◆ GetRegionOfInterest()

template<typename TInputImage, typename TOutputMesh>

virtual const RegionType & itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::GetRegionOfInterest ( ) const

virtual

◆ InitializeLUT()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::InitializeLUT ( )

private

◆ inverse()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::inverse ( unsigned char * x )

private

◆ New()

template<typename TInputImage, typename TOutputMesh>

static Pointer itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::New ( )

static

Method for creation through the object factory.

◆ PrintSelf()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::PrintSelf	(	std::ostream &	os,
		Indent	indent ) const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::LightObject.

◆ SearchThroughLastFrame()

template<typename TInputImage, typename TOutputMesh>

IdentifierType itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::SearchThroughLastFrame	(	int	index,
		int	start,
		int	end )

private

◆ SearchThroughLastRow()

template<typename TInputImage, typename TOutputMesh>

IdentifierType itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::SearchThroughLastRow	(	int	index,
		int	start,
		int	end )

private

◆ SetInput() [1/2]

template<typename TInputImage, typename TOutputMesh>

virtual void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::SetInput ( const InputImageType * image )

virtual

◆ SetInput() [2/2]

template<typename TInputImage, typename TOutputMesh>

void itk::ImageToMeshFilter< TInputImage, TOutputMesh >::SetInput	(	unsigned int	idx,
		const InputImageType *	input )

accept the input image

◆ SetObjectValue()

template<typename TInputImage, typename TOutputMesh>

virtual void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::SetObjectValue ( InputPixelType _arg )

virtual

◆ SetRegionOfInterest()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::SetRegionOfInterest ( const RegionType & iRegion )

inline

Definition at line 137 of file itkBinaryMask3DMeshSource.h.

References m_RegionOfInterest, m_RegionOfInterestProvidedByUser, and itk::Object::Modified().

◆ XFlip()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::XFlip ( unsigned char * x )

private

◆ XRotation()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::XRotation ( unsigned char * x )

private

◆ YFlip()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::YFlip ( unsigned char * x )

private

◆ YRotation()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::YRotation ( unsigned char * x )

private

◆ ZFlip()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::ZFlip ( unsigned char * x )

private

◆ ZRotation()

template<typename TInputImage, typename TOutputMesh>

void itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::ZRotation ( unsigned char * x )

private

Member Data Documentation

◆ m_AvailableNodes

template<typename TInputImage, typename TOutputMesh>

unsigned char itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_AvailableNodes[14] {}

private

Definition at line 232 of file itkBinaryMask3DMeshSource.h.

◆ m_CellLimit

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_CellLimit { 4000 }

private

Definition at line 240 of file itkBinaryMask3DMeshSource.h.

◆ m_ColFlag

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_ColFlag { 0 }

private

Definition at line 244 of file itkBinaryMask3DMeshSource.h.

◆ m_CurrentFrame

template<typename TInputImage, typename TOutputMesh>

IdentifierType** itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_CurrentFrame { nullptr }

private

Definition at line 224 of file itkBinaryMask3DMeshSource.h.

◆ m_CurrentFrameIndex

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_CurrentFrameIndex { 0 }

private

Definition at line 227 of file itkBinaryMask3DMeshSource.h.

◆ m_CurrentFrameNum

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_CurrentFrameNum { 2000 }

private

Definition at line 231 of file itkBinaryMask3DMeshSource.h.

◆ m_CurrentRow

template<typename TInputImage, typename TOutputMesh>

IdentifierType** itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_CurrentRow { nullptr }

private

Definition at line 223 of file itkBinaryMask3DMeshSource.h.

◆ m_CurrentRowIndex

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_CurrentRowIndex { 0 }

private

Definition at line 226 of file itkBinaryMask3DMeshSource.h.

◆ m_CurrentRowNum

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_CurrentRowNum { 200 }

private

Definition at line 230 of file itkBinaryMask3DMeshSource.h.

◆ m_CurrentVoxel

template<typename TInputImage, typename TOutputMesh>

IdentifierType itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_CurrentVoxel[14] {}

private

Definition at line 219 of file itkBinaryMask3DMeshSource.h.

◆ m_FrameFlag

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_FrameFlag { 0 }

private

Definition at line 246 of file itkBinaryMask3DMeshSource.h.

◆ m_ImageDepth

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_ImageDepth { 0 }

private

Definition at line 243 of file itkBinaryMask3DMeshSource.h.

◆ m_ImageHeight

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_ImageHeight { 0 }

private

Definition at line 242 of file itkBinaryMask3DMeshSource.h.

◆ m_ImageWidth

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_ImageWidth { 0 }

private

Definition at line 241 of file itkBinaryMask3DMeshSource.h.

◆ m_InputImage

template<typename TInputImage, typename TOutputMesh>

const InputImageType* itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_InputImage {}

private

Definition at line 258 of file itkBinaryMask3DMeshSource.h.

◆ m_LastFrame

template<typename TInputImage, typename TOutputMesh>

IdentifierType** itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_LastFrame { nullptr }

private

Definition at line 222 of file itkBinaryMask3DMeshSource.h.

◆ m_LastFrameIndex

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_LastFrameIndex { 0 }

private

Definition at line 249 of file itkBinaryMask3DMeshSource.h.

◆ m_LastFrameNum

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_LastFrameNum { 0 }

private

Definition at line 229 of file itkBinaryMask3DMeshSource.h.

◆ m_LastRow

template<typename TInputImage, typename TOutputMesh>

IdentifierType** itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_LastRow { nullptr }

private

Definition at line 221 of file itkBinaryMask3DMeshSource.h.

◆ m_LastRowIndex

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_LastRowIndex { 0 }

private

Definition at line 247 of file itkBinaryMask3DMeshSource.h.

◆ m_LastRowNum

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_LastRowNum { 0 }

private

Definition at line 228 of file itkBinaryMask3DMeshSource.h.

◆ m_LastVoxel

template<typename TInputImage, typename TOutputMesh>

IdentifierType itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_LastVoxel[14] {}

private

Definition at line 218 of file itkBinaryMask3DMeshSource.h.

◆ m_LastVoxelIndex

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_LastVoxelIndex { 0 }

private

Definition at line 248 of file itkBinaryMask3DMeshSource.h.

◆ m_LocationOffset

template<typename TInputImage, typename TOutputMesh>

double itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_LocationOffset[14][3] {}

private

Definition at line 234 of file itkBinaryMask3DMeshSource.h.

◆ m_LUT

template<typename TInputImage, typename TOutputMesh>

unsigned char itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_LUT[256][2] {}

private

Definition at line 216 of file itkBinaryMask3DMeshSource.h.

◆ m_NodeLimit

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_NodeLimit { 2000 }

private

Definition at line 239 of file itkBinaryMask3DMeshSource.h.

◆ m_NumberOfCells

template<typename TInputImage, typename TOutputMesh>

SizeValueType itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_NumberOfCells { 0 }

private

Definition at line 237 of file itkBinaryMask3DMeshSource.h.

◆ m_NumberOfNodes

template<typename TInputImage, typename TOutputMesh>

SizeValueType itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_NumberOfNodes { 0 }

private

Definition at line 236 of file itkBinaryMask3DMeshSource.h.

◆ m_ObjectValue

template<typename TInputImage, typename TOutputMesh>

InputPixelType itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_ObjectValue {}

private

Definition at line 252 of file itkBinaryMask3DMeshSource.h.

◆ m_OutputMesh

template<typename TInputImage, typename TOutputMesh>

OutputMeshType* itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_OutputMesh {}

private

temporary variables used in CreateMesh to avoid thousands of calls to GetInput() and GetOutput()

Definition at line 257 of file itkBinaryMask3DMeshSource.h.

◆ m_PointFound

template<typename TInputImage, typename TOutputMesh>

unsigned char itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_PointFound { 0 }

private

Definition at line 251 of file itkBinaryMask3DMeshSource.h.

◆ m_RegionOfInterest

template<typename TInputImage, typename TOutputMesh>

RegionType itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_RegionOfInterest {}

protected

Definition at line 160 of file itkBinaryMask3DMeshSource.h.

Referenced by SetRegionOfInterest().

◆ m_RegionOfInterestProvidedByUser

template<typename TInputImage, typename TOutputMesh>

bool itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_RegionOfInterestProvidedByUser { false }

protected

Definition at line 159 of file itkBinaryMask3DMeshSource.h.

Referenced by SetRegionOfInterest().

◆ m_RowFlag

template<typename TInputImage, typename TOutputMesh>

int itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >::m_RowFlag { 0 }

private

Definition at line 245 of file itkBinaryMask3DMeshSource.h.

The documentation for this class was generated from the following file:

itkBinaryMask3DMeshSource.h

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Private Types

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ CellsContainer

◆ CellsContainerPointer

◆ CellTraits

◆ ConstPointer

◆ doubleVector

◆ IdentifierType

◆ InputImageConstPointer

◆ InputImageIndexType

◆ InputImageIterator

◆ InputImagePointer

◆ InputImageSizeType

◆ InputImageType

◆ InputPixelType

◆ intVector

◆ OMeshTraits

◆ OPixelType

◆ OPointType

◆ OriginType

◆ OutputMeshPointer

◆ OutputMeshType

◆ Pointer

◆ PointsContainer

◆ PointsContainerPointer

◆ RegionType

◆ Self

◆ SizeType

◆ SizeValueType

◆ SpacingType

◆ Superclass

◆ TCellInterface

◆ TriCell

◆ TriCellAutoPointer

Constructor & Destructor Documentation

◆ BinaryMask3DMeshSource()

◆ ~BinaryMask3DMeshSource()

Member Function Documentation

◆ AddCells()

◆ AddNodes()

◆ CellTransfer()

◆ CreateAnother()

◆ CreateMesh()

◆ GenerateData()

◆ GenerateOutputInformation()

◆ GetNameOfClass()

◆ GetNumberOfCells()

◆ GetNumberOfNodes()

◆ GetRegionOfInterest()

◆ InitializeLUT()

◆ inverse()

◆ New()

◆ PrintSelf()

◆ SearchThroughLastFrame()

◆ SearchThroughLastRow()

◆ SetInput() [1/2]

◆ SetInput() [2/2]

◆ SetObjectValue()

◆ SetRegionOfInterest()

◆ XFlip()

◆ XRotation()

◆ YFlip()

◆ YRotation()

◆ ZFlip()

◆ ZRotation()

Member Data Documentation

◆ m_AvailableNodes

◆ m_CellLimit

◆ m_ColFlag

◆ m_CurrentFrame

◆ m_CurrentFrameIndex