template<typename TInputImage, typename TOutputMesh>
class itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >
- This class tries to construct a 3D mesh surface based on a binary mask. It can be used to integrate a region-based segmentation method and a deformable model into one hybrid framework.
- To construct a mesh, we need to construct elements in a voxel and combine those elements later to form the final mesh. Before go through every voxel in the 3D volume, we first construct 2 look up tables. The index of these 2 tables are the on-off combination of the 8 nodes that form the voxel. So both of these tables has the size of $2^8$ bytes. According to previous work, all those $2^8$ combination of the nodes can be grouped into 16 final combinations. In the first table, we record the final combination that can be transformed from the current combination. The entries of the second table are made up of the transforming sequence that is necessary for the current combination transform to one of the final combinations. For more details see [73].
- We then go through the 3D volume voxel by voxel, using those two tables we have defined to construct elements within each voxel. We then merge all these mesh elements into one 3D mesh.
- PARAMETERS
- The ObjectValue parameter is used to identify the object. In most applications, pixels in the object region are assigned to "1", so the default value of ObjectValue is set to "1"
- INPUT
- The input should be a 3D binary image.
- Examples
- Examples/Filtering/SurfaceExtraction.cxx.
Definition at line 69 of file itkBinaryMask3DMeshSource.h.
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| virtual::itk::LightObject::Pointer | CreateAnother () const |
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| virtual const char * | GetNameOfClass () const |
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| virtual SizeValueType | GetNumberOfCells () const |
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| virtual SizeValueType | GetNumberOfNodes () const |
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| virtual const RegionType & | GetRegionOfInterest () const |
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| virtual void | SetInput (const InputImageType *image) |
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| void | SetInput (unsigned int idx, const InputImageType *input) |
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| virtual void | SetObjectValue (InputPixelType _arg) |
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| void | SetRegionOfInterest (const RegionType &iRegion) |
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| void | GenerateOutputInformation () override |
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| OutputMeshType * | GetOutput () |
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| DataObject::Pointer | MakeOutput (DataObjectPointerArraySizeType idx) override |
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| void | SetInput (unsigned int idx, const InputImageType *input) |
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| void | SetInput (const InputImageType *input) |
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| const InputImageType * | GetInput (unsigned int idx) |
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| const InputImageType * | GetInput () |
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| virtual::itk::LightObject::Pointer | CreateAnother () const |
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| OutputMeshType * | GetOutput () |
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| OutputMeshType * | GetOutput (unsigned int idx) |
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| virtual void | GraftNthOutput (unsigned int idx, DataObject *graft) |
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| virtual void | GraftOutput (const DataObjectIdentifierType &key, DataObject *graft) |
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| virtual void | GraftOutput (DataObject *graft) |
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| void | SetOutput (TOutputMesh *output) |
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| virtual void | SetOutput (const DataObjectIdentifierType &name, DataObject *output) |
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| DataObjectPointer | MakeOutput (DataObjectPointerArraySizeType idx) override |
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| virtual DataObjectPointer | MakeOutput (const DataObjectIdentifierType &) |
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| virtual void | AbortGenerateDataOff () |
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| virtual void | AbortGenerateDataOn () |
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| virtual void | EnlargeOutputRequestedRegion (DataObject *output) |
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| virtual const bool & | GetAbortGenerateData () const |
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| DataObjectPointerArray | GetIndexedInputs () |
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| DataObjectPointerArray | GetIndexedOutputs () |
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| NameArray | GetInputNames () const |
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| DataObjectPointerArray | GetInputs () |
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| MultiThreaderBase * | GetMultiThreader () const |
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| DataObjectPointerArraySizeType | GetNumberOfIndexedInputs () const |
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| DataObjectPointerArraySizeType | GetNumberOfIndexedOutputs () const |
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| DataObjectPointerArraySizeType | GetNumberOfInputs () const |
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| DataObjectPointerArraySizeType | GetNumberOfOutputs () const |
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| virtual DataObjectPointerArraySizeType | GetNumberOfValidRequiredInputs () const |
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| NameArray | GetOutputNames () const |
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| DataObjectPointerArray | GetOutputs () |
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| virtual float | GetProgress () const |
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| NameArray | GetRequiredInputNames () const |
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| bool | HasInput (const DataObjectIdentifierType &key) const |
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| bool | HasOutput (const DataObjectIdentifierType &key) const |
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| void | IncrementProgress (float increment) |
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| virtual void | PrepareOutputs () |
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| virtual void | PropagateRequestedRegion (DataObject *output) |
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| virtual void | ResetPipeline () |
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| virtual void | SetAbortGenerateData (bool _arg) |
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| void | SetMultiThreader (MultiThreaderBase *threader) |
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| virtual void | Update () |
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| virtual void | UpdateLargestPossibleRegion () |
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| virtual void | UpdateOutputData (DataObject *output) |
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| virtual void | UpdateOutputInformation () |
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| void | UpdateProgress (float progress) |
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| virtual void | SetReleaseDataFlag (bool val) |
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| virtual bool | GetReleaseDataFlag () const |
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| void | ReleaseDataFlagOn () |
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| void | ReleaseDataFlagOff () |
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| virtual void | SetReleaseDataBeforeUpdateFlag (bool _arg) |
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| virtual const bool & | GetReleaseDataBeforeUpdateFlag () const |
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| virtual void | ReleaseDataBeforeUpdateFlagOn () |
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| virtual void | ReleaseDataBeforeUpdateFlagOff () |
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| | itkVirtualSetClampMacro (NumberOfWorkUnits, ThreadIdType, 1, ITK_MAX_THREADS) |
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| virtual const ThreadIdType & | GetNumberOfWorkUnits () const |
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| unsigned long | AddObserver (const EventObject &event, Command *cmd) const |
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| unsigned long | AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const |
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| LightObject::Pointer | CreateAnother () const override |
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| virtual void | DebugOff () const |
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| virtual void | DebugOn () const |
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| Command * | GetCommand (unsigned long tag) |
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| bool | GetDebug () const |
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| MetaDataDictionary & | GetMetaDataDictionary () |
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| const MetaDataDictionary & | GetMetaDataDictionary () const |
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| virtual ModifiedTimeType | GetMTime () const |
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| virtual const TimeStamp & | GetTimeStamp () const |
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| bool | HasObserver (const EventObject &event) const |
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| void | InvokeEvent (const EventObject &) |
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| void | InvokeEvent (const EventObject &) const |
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| virtual void | Modified () const |
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| void | Register () const override |
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| void | RemoveAllObservers () |
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| void | RemoveObserver (unsigned long tag) const |
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| void | SetDebug (bool debugFlag) const |
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| void | SetReferenceCount (int) override |
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| void | UnRegister () const noexcept override |
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| void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
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| void | SetMetaDataDictionary (MetaDataDictionary &&rrhs) |
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| virtual void | SetObjectName (std::string _arg) |
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| virtual const std::string & | GetObjectName () const |
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| Pointer | Clone () const |
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| virtual void | Delete () |
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| virtual int | GetReferenceCount () const |
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| void | Print (std::ostream &os, Indent indent=0) const |
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| | BinaryMask3DMeshSource () |
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| void | GenerateData () override |
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| void | GenerateOutputInformation () override |
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| void | PrintSelf (std::ostream &os, Indent indent) const override |
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| | ~BinaryMask3DMeshSource () override |
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| | ImageToMeshFilter () |
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| | ~ImageToMeshFilter () override=default |
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| void | GenerateInputRequestedRegion () override |
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| | MeshSource () |
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| void | PrintSelf (std::ostream &os, Indent indent) const override |
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| | ~MeshSource () override=default |
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| virtual void | AddInput (DataObject *input) |
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| void | AddOptionalInputName (const DataObjectIdentifierType &) |
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| void | AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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| virtual void | AddOutput (DataObject *output) |
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| bool | AddRequiredInputName (const DataObjectIdentifierType &) |
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| bool | AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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| virtual void | CacheInputReleaseDataFlags () |
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| virtual void | GenerateOutputRequestedRegion (DataObject *output) |
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| DataObject * | GetInput (const DataObjectIdentifierType &key) |
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| const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
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| virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () const |
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| virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () const |
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| bool | IsIndexedInputName (const DataObjectIdentifierType &) const |
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| bool | IsIndexedOutputName (const DataObjectIdentifierType &) const |
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| bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
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| DataObjectPointerArraySizeType | MakeIndexFromInputName (const DataObjectIdentifierType &name) const |
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| DataObjectPointerArraySizeType | MakeIndexFromOutputName (const DataObjectIdentifierType &name) const |
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| DataObjectIdentifierType | MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const |
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| DataObjectIdentifierType | MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const |
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| virtual void | PopBackInput () |
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| virtual void | PopFrontInput () |
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| void | PrintSelf (std::ostream &os, Indent indent) const override |
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| | ProcessObject () |
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| virtual void | PropagateResetPipeline () |
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| virtual void | PushBackInput (const DataObject *input) |
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| virtual void | PushFrontInput (const DataObject *input) |
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| virtual void | ReleaseInputs () |
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| virtual void | RemoveInput (const DataObjectIdentifierType &key) |
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| virtual void | RemoveInput (DataObjectPointerArraySizeType) |
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| virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
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| virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
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| bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
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| virtual void | RestoreInputReleaseDataFlags () |
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| virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
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| virtual void | SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input) |
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| virtual void | SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output) |
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| void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
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| void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
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| virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
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| virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
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| virtual void | SetPrimaryInput (DataObject *object) |
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| virtual void | SetPrimaryOutput (DataObject *object) |
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| void | SetRequiredInputNames (const NameArray &) |
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| virtual void | VerifyInputInformation () const |
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| virtual void | VerifyPreconditions () const |
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| | ~ProcessObject () override |
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| DataObject * | GetInput (DataObjectPointerArraySizeType idx) |
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| const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
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| DataObject * | GetPrimaryInput () |
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| const DataObject * | GetPrimaryInput () const |
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| virtual void | SetPrimaryInputName (const DataObjectIdentifierType &key) |
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| virtual const char * | GetPrimaryInputName () const |
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| DataObject * | GetOutput (const DataObjectIdentifierType &key) |
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| const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
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| virtual void | SetPrimaryOutputName (const DataObjectIdentifierType &key) |
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| virtual const char * | GetPrimaryOutputName () const |
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| DataObject * | GetOutput (DataObjectPointerArraySizeType i) |
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| const DataObject * | GetOutput (DataObjectPointerArraySizeType i) const |
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| DataObject * | GetPrimaryOutput () |
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| const DataObject * | GetPrimaryOutput () const |
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| virtual bool | GetThreaderUpdateProgress () const |
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| virtual void | ThreaderUpdateProgressOn () |
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| virtual void | ThreaderUpdateProgressOff () |
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| virtual void | SetThreaderUpdateProgress (bool arg) |
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| | Object () |
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| bool | PrintObservers (std::ostream &os, Indent indent) const |
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| virtual void | SetTimeStamp (const TimeStamp &timeStamp) |
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| | ~Object () override |
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| virtual LightObject::Pointer | InternalClone () const |
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| | LightObject () |
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| virtual void | PrintHeader (std::ostream &os, Indent indent) const |
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| virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
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| virtual | ~LightObject () |
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| void | AddCells (unsigned char celltype, unsigned char celltran, int index) |
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| void | AddNodes (int index, unsigned char *nodesid, IdentifierType *globalnodesid, IdentifierType **currentrowtmp, IdentifierType **currentframetmp) |
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| void | CellTransfer (unsigned char *nodesid, unsigned char celltran) |
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| void | CreateMesh () |
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| void | InitializeLUT () |
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| void | inverse (unsigned char *x) |
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| IdentifierType | SearchThroughLastFrame (int index, int start, int end) |
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| IdentifierType | SearchThroughLastRow (int index, int start, int end) |
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| void | XFlip (unsigned char *x) |
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| void | XRotation (unsigned char *x) |
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| void | YFlip (unsigned char *x) |
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| void | YRotation (unsigned char *x) |
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| void | ZFlip (unsigned char *x) |
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| void | ZRotation (unsigned char *x) |
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template<typename TInputImage, typename TOutputMesh>
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inlineoverrideprotectedvirtual |
Generate the information describing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.
Reimplemented from itk::ProcessObject.
Definition at line 163 of file itkBinaryMask3DMeshSource.h.
Inheritance diagram for itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >:
1.13.2