ITK
6.0.0
Insight Toolkit
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#include <itkESMDemonsRegistrationFunction.h>
Fast implementation of the symmetric demons registration force.
This class provides a substantially faster implementation of the symmetric demons registration force. Speed is improved by keeping a deformed copy of the moving image for gradient evaluation.
Symmetric forces simply means using the mean of the gradient of the fixed image and the gradient of the warped moving image.
Note that this class also enables the use of fixed, mapped moving and warped moving images forces by using a call to SetUseGradientType
The moving image should not be saturated. We indeed use NumericTraits<MovingPixelType>::Max() as a special value.
This implementation was taken from the Insight Journal paper: https://doi.org/10.54294/ux2obj
Definition at line 84 of file itkESMDemonsRegistrationFunction.h.
Classes | |
struct | GlobalDataStruct |
Static Public Member Functions | |
static Pointer | New () |
Static Public Member Functions inherited from itk::LightObject | |
static void | BreakOnError () |
static Pointer | New () |
Static Public Attributes | |
static constexpr unsigned int | ImageDimension = Superclass::ImageDimension |
Static Public Attributes inherited from itk::FiniteDifferenceFunction< TDisplacementField > | |
static constexpr unsigned int | ImageDimension |
Protected Types | |
using | FixedImageNeighborhoodIteratorType = ConstNeighborhoodIterator< FixedImageType > |
Protected Member Functions | |
ESMDemonsRegistrationFunction () | |
void | PrintSelf (std::ostream &os, Indent indent) const override |
~ESMDemonsRegistrationFunction () override=default | |
Protected Member Functions inherited from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField > | |
PDEDeformableRegistrationFunction () | |
void | PrintSelf (std::ostream &os, Indent indent) const override |
~PDEDeformableRegistrationFunction () override=default | |
Protected Member Functions inherited from itk::FiniteDifferenceFunction< TDisplacementField > | |
FiniteDifferenceFunction () | |
void | PrintSelf (std::ostream &os, Indent indent) const override |
~FiniteDifferenceFunction () override=default | |
Protected Member Functions inherited from itk::LightObject | |
virtual LightObject::Pointer | InternalClone () const |
LightObject () | |
virtual void | PrintHeader (std::ostream &os, Indent indent) const |
virtual void | PrintSelf (std::ostream &os, Indent indent) const |
virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
virtual | ~LightObject () |
Private Attributes | |
double | m_DenominatorThreshold {} |
DirectionType | m_FixedImageDirection {} |
GradientCalculatorPointer | m_FixedImageGradientCalculator {} |
PointType | m_FixedImageOrigin {} |
SpacingType | m_FixedImageSpacing {} |
double | m_IntensityDifferenceThreshold {} |
MovingImageGradientCalculatorPointer | m_MappedMovingImageGradientCalculator {} |
double | m_MaximumUpdateStepLength {} |
double | m_Metric {} |
std::mutex | m_MetricCalculationMutex {} |
InterpolatorPointer | m_MovingImageInterpolator {} |
WarperPointer | m_MovingImageWarper {} |
MovingImageType * | m_MovingImageWarperOutput {} |
double | m_Normalizer {} |
SizeValueType | m_NumberOfPixelsProcessed {} |
double | m_RMSChange {} |
double | m_SumOfSquaredChange {} |
double | m_SumOfSquaredDifference {} |
TimeStepType | m_TimeStep {} |
GradientEnum | m_UseGradientType {} |
Additional Inherited Members | |
Protected Attributes inherited from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField > | |
DisplacementFieldTypePointer | m_DisplacementField {} |
double | m_Energy {} |
FixedImagePointer | m_FixedImage {} |
double | m_GradientStep {} |
MovingImagePointer | m_MovingImage {} |
bool | m_NormalizeGradient {} |
Protected Attributes inherited from itk::FiniteDifferenceFunction< TDisplacementField > | |
RadiusType | m_Radius |
PixelRealType | m_ScaleCoefficients [ImageDimension] |
Protected Attributes inherited from itk::LightObject | |
std::atomic< int > | m_ReferenceCount {} |
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::ConstPointer = SmartPointer<const Self> |
Definition at line 95 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::CoordRepType = double |
Interpolator type.
Definition at line 131 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::CovariantVectorType = CovariantVector<double, Self::ImageDimension> |
Covariant vector type.
Definition at line 143 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::DefaultInterpolatorType = LinearInterpolateImageFunction<MovingImageType, CoordRepType> |
Definition at line 135 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::DirectionType = typename FixedImageType::DirectionType |
Definition at line 114 of file itkESMDemonsRegistrationFunction.h.
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protected |
FixedImage image neighborhood iterator type.
Definition at line 272 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GradientCalculatorPointer = typename GradientCalculatorType::Pointer |
Definition at line 147 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GradientCalculatorType = CentralDifferenceImageFunction<FixedImageType> |
Fixed image gradient calculator type.
Definition at line 146 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GradientEnum = ESMDemonsRegistrationFunctionEnums::Gradient |
Definition at line 243 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::IndexType = typename FixedImageType::IndexType |
Definition at line 111 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::InterpolatorPointer = typename InterpolatorType::Pointer |
Definition at line 133 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::InterpolatorType = InterpolateImageFunction<MovingImageType, CoordRepType> |
Definition at line 132 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::MovingImageGradientCalculatorPointer = typename MovingImageGradientCalculatorType::Pointer |
Definition at line 151 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::MovingImageGradientCalculatorType = CentralDifferenceImageFunction<MovingImageType, CoordRepType> |
Moving image gradient (unwarped) calculator type.
Definition at line 150 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::MovingPixelType = typename MovingImageType::PixelType |
Definition at line 106 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::Pointer = SmartPointer<Self> |
Definition at line 94 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::PointType = typename InterpolatorType::PointType |
Definition at line 134 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::Self = ESMDemonsRegistrationFunction |
Standard class type aliases.
Definition at line 91 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::SizeType = typename FixedImageType::SizeType |
Definition at line 112 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::SpacingType = typename FixedImageType::SpacingType |
Definition at line 113 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::Superclass = PDEDeformableRegistrationFunction<TFixedImage, TMovingImage, TDisplacementField> |
Definition at line 92 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::WarperPointer = typename WarperType::Pointer |
Definition at line 140 of file itkESMDemonsRegistrationFunction.h.
using itk::ESMDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::WarperType = WarpImageFilter<MovingImageType, MovingImageType, DisplacementFieldType> |
Warper type
Definition at line 138 of file itkESMDemonsRegistrationFunction.h.
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This class uses a constant timestep of 1.
Implements itk::FiniteDifferenceFunction< TDisplacementField >.
Definition at line 171 of file itkESMDemonsRegistrationFunction.h.
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Compute update at a non-boundary neighbourhood. Called by a finite difference solver image filter at each pixel that does not lie on a data set boundary.
Implements itk::FiniteDifferenceFunction< TDisplacementField >.
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Return a pointer to a global data structure that is passed to this object from the solver at each calculation.
Implements itk::FiniteDifferenceFunction< TDisplacementField >.
Definition at line 179 of file itkESMDemonsRegistrationFunction.h.
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Definition at line 238 of file itkESMDemonsRegistrationFunction.h.
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Get the metric value. The metric value is the mean square difference in intensity between the fixed image and transforming moving image computed over the overlapping region between the two images.
Definition at line 206 of file itkESMDemonsRegistrationFunction.h.
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Get the moving image interpolator.
Definition at line 164 of file itkESMDemonsRegistrationFunction.h.
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Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
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Get the rms change in deformation field.
Definition at line 213 of file itkESMDemonsRegistrationFunction.h.
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Set/Get the type of used image forces
Definition at line 259 of file itkESMDemonsRegistrationFunction.h.
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Set the object's state before each iteration.
Reimplemented from itk::FiniteDifferenceFunction< TDisplacementField >.
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Method for creation through the object factory.
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overrideprotectedvirtual |
Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
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Update the metric and release memory for the per-thread-global data structure.
Implements itk::FiniteDifferenceFunction< TDisplacementField >.
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Set/Get the threshold below which the absolute difference of intensity yields a match. When the intensities match between a moving and fixed image pixel, the update vector (for that iteration) will be the zero vector. Default is 0.001.
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Set/Get the maximum update step length. In Thirion this is 0.5. Setting it to 0 implies no restriction (beware of numerical instability in this case.
Definition at line 232 of file itkESMDemonsRegistrationFunction.h.
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Set the moving image interpolator.
Definition at line 155 of file itkESMDemonsRegistrationFunction.h.
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Set/Get the type of used image forces
Definition at line 254 of file itkESMDemonsRegistrationFunction.h.
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Inherit some enums from the superclass.
Definition at line 121 of file itkESMDemonsRegistrationFunction.h.
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Threshold below which the denominator term is considered zero.
Definition at line 310 of file itkESMDemonsRegistrationFunction.h.
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Definition at line 287 of file itkESMDemonsRegistrationFunction.h.
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Function to compute derivatives of the fixed image.
Definition at line 291 of file itkESMDemonsRegistrationFunction.h.
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Cache fixed image information.
Definition at line 285 of file itkESMDemonsRegistrationFunction.h.
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Definition at line 286 of file itkESMDemonsRegistrationFunction.h.
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Threshold below which two intensity value are assumed to match.
Definition at line 313 of file itkESMDemonsRegistrationFunction.h.
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Function to compute derivatives of the moving image (unwarped).
Definition at line 294 of file itkESMDemonsRegistrationFunction.h.
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Maximum update step length in pixels (default is 0.5 as in Thirion).
Definition at line 316 of file itkESMDemonsRegistrationFunction.h.
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The metric value is the mean square difference in intensity between the fixed image and transforming moving image computed over the the overlapping region between the two images.
Definition at line 321 of file itkESMDemonsRegistrationFunction.h.
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Mutex lock to protect modification to metric.
Definition at line 328 of file itkESMDemonsRegistrationFunction.h.
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Function to interpolate the moving image.
Definition at line 299 of file itkESMDemonsRegistrationFunction.h.
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Filter to warp moving image for fast gradient computation.
Definition at line 302 of file itkESMDemonsRegistrationFunction.h.
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Definition at line 304 of file itkESMDemonsRegistrationFunction.h.
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Definition at line 288 of file itkESMDemonsRegistrationFunction.h.
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Definition at line 323 of file itkESMDemonsRegistrationFunction.h.
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Definition at line 324 of file itkESMDemonsRegistrationFunction.h.
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Definition at line 325 of file itkESMDemonsRegistrationFunction.h.
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Definition at line 322 of file itkESMDemonsRegistrationFunction.h.
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The global timestep.
Definition at line 307 of file itkESMDemonsRegistrationFunction.h.
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Definition at line 296 of file itkESMDemonsRegistrationFunction.h.