template<typename TFixedImage, typename TMovingImage, typename TDisplacementField>
class itk::DemonsRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >
Deformably register two images using the demons algorithm.
DemonsRegistrationFilter implements the demons deformable algorithm that register two images by computing the displacement field which will map a moving image onto a fixed image.
A displacement field is represented as a image whose pixel type is some vector type with at least N elements, where N is the dimension of the fixed image. The vector type must support element access via operator []. It is assumed that the vector elements behave like floating point scalars.
This class is templated over the fixed image type, moving image type and the displacement field type.
The input fixed and moving images are set via methods SetFixedImage and SetMovingImage respectively. An initial displacement field maybe set via SetInitialDisplacementField or SetInput. If no initial field is set, a zero field is used as the initial condition.
The algorithm has one parameters: the number of iteration to be performed.
The output displacement field can be obtained via methods GetOutput or GetDisplacementField.
This class make use of the finite difference solver hierarchy. Update for each iteration is computed in DemonsRegistrationFunction.
- Warning
- This filter assumes that the fixed image type, moving image type and displacement field type all have the same number of dimensions.
- See also
- DemonsRegistrationFunction
Definition at line 63 of file itkDemonsRegistrationFilter.h.
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using | ConstPointer = SmartPointer< const Self > |
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using | DemonsRegistrationFunctionType = DemonsRegistrationFunction< FixedImageType, MovingImageType, DisplacementFieldType > |
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using | Pointer = SmartPointer< Self > |
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using | Self = DemonsRegistrationFilter |
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using | Superclass = PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > |
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using | ConstPointer = SmartPointer< const Self > |
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using | DisplacementFieldPointer = typename DisplacementFieldType::Pointer |
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using | DisplacementFieldType = TDisplacementField |
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using | FixedImageConstPointer = typename FixedImageType::ConstPointer |
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using | FixedImagePointer = typename FixedImageType::Pointer |
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using | FixedImageType = TFixedImage |
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using | MovingImageConstPointer = typename MovingImageType::ConstPointer |
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using | MovingImagePointer = typename MovingImageType::Pointer |
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using | MovingImageType = TMovingImage |
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using | PDEDeformableRegistrationFunctionType = PDEDeformableRegistrationFunction< FixedImageType, MovingImageType, DisplacementFieldType > |
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using | Pointer = SmartPointer< Self > |
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using | Self = PDEDeformableRegistrationFilter |
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using | StandardDeviationsType = FixedArray< double, ImageDimension > |
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using | Superclass = DenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField > |
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using | ConstPointer = SmartPointer< const Self > |
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using | Pointer = SmartPointer< Self > |
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using | Self = DenseFiniteDifferenceImageFilter |
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using | Superclass = FiniteDifferenceImageFilter< TDisplacementField, TDisplacementField > |
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using | UpdateBufferType = OutputImageType |
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using | ConstPointer = SmartPointer< const Self > |
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using | FiniteDifferenceFunctionType = FiniteDifferenceFunction< TDisplacementField > |
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using | InputImageType = TDisplacementField |
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using | InputPixelType = typename TInputImage::PixelType |
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using | InputPixelValueType = typename NumericTraits< InputPixelType >::ValueType |
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using | NeighborhoodScalesType = typename FiniteDifferenceFunctionType::NeighborhoodScalesType |
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using | OutputImageType = TDisplacementField |
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using | OutputPixelType = typename TOutputImage::PixelType |
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using | OutputPixelValueType = typename NumericTraits< OutputPixelType >::ValueType |
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using | PixelType = OutputPixelType |
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using | Pointer = SmartPointer< Self > |
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using | RadiusType = typename FiniteDifferenceFunctionType::RadiusType |
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using | Self = FiniteDifferenceImageFilter |
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using | Superclass = InPlaceImageFilter< TDisplacementField, TDisplacementField > |
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using | TimeStepType = typename FiniteDifferenceFunctionType::TimeStepType |
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using | ConstPointer = SmartPointer< const Self > |
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using | InputImageConstPointer = typename InputImageType::ConstPointer |
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using | InputImagePixelType = typename InputImageType::PixelType |
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using | InputImagePointer = typename InputImageType::Pointer |
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using | InputImageRegionType = typename InputImageType::RegionType |
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using | InputImageType = TDisplacementField |
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using | Pointer = SmartPointer< Self > |
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using | Self = InPlaceImageFilter |
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using | Superclass = ImageToImageFilter< TDisplacementField, TDisplacementField > |
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using | ConstPointer = SmartPointer< const Self > |
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using | InputImageConstPointer = typename InputImageType::ConstPointer |
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using | InputImagePixelType = typename InputImageType::PixelType |
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using | InputImagePointer = typename InputImageType::Pointer |
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using | InputImageRegionType = typename InputImageType::RegionType |
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using | InputImageType = TDisplacementField |
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using | Pointer = SmartPointer< Self > |
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using | Self = ImageToImageFilter |
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using | Superclass = ImageSource< TDisplacementField > |
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using | ConstPointer = SmartPointer< const Self > |
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using | DataObjectIdentifierType = Superclass::DataObjectIdentifierType |
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using | DataObjectPointer = DataObject::Pointer |
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using | DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType |
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using | OutputImagePixelType = typename OutputImageType::PixelType |
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using | OutputImagePointer = typename OutputImageType::Pointer |
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using | OutputImageRegionType = typename OutputImageType::RegionType |
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using | OutputImageType = TDisplacementField |
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using | Pointer = SmartPointer< Self > |
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using | Self = ImageSource |
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using | Superclass = ProcessObject |
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using | ConstPointer = SmartPointer< const Self > |
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using | DataObjectIdentifierType = DataObject::DataObjectIdentifierType |
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using | DataObjectPointer = DataObject::Pointer |
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using | DataObjectPointerArray = std::vector< DataObjectPointer > |
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using | DataObjectPointerArraySizeType = DataObjectPointerArray::size_type |
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using | MultiThreaderType = MultiThreaderBase |
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using | NameArray = std::vector< DataObjectIdentifierType > |
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using | Pointer = SmartPointer< Self > |
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using | Self = ProcessObject |
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using | Superclass = Object |
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using | ConstPointer = SmartPointer< const Self > |
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using | Pointer = SmartPointer< Self > |
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using | Self = Object |
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using | Superclass = LightObject |
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using | ConstPointer = SmartPointer< const Self > |
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using | Pointer = SmartPointer< Self > |
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using | Self = LightObject |
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virtual double | GetIntensityDifferenceThreshold () const |
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virtual double | GetMetric () const |
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const char * | GetNameOfClass () const override |
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virtual void | SetIntensityDifferenceThreshold (double) |
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virtual void | SetUseMovingImageGradient (bool _arg) |
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virtual bool | GetUseMovingImageGradient () const |
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virtual void | UseMovingImageGradientOn () |
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DisplacementFieldType * | GetDisplacementField () |
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const char * | GetNameOfClass () const override |
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std::vector< SmartPointer< DataObject > >::size_type | GetNumberOfValidRequiredInputs () const override |
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virtual const StandardDeviationsType & | GetStandardDeviations () const |
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virtual const StandardDeviationsType & | GetUpdateFieldStandardDeviations () const |
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| itkGetInputMacro (FixedImage, FixedImageType) |
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| itkGetInputMacro (InitialDisplacementField, DisplacementFieldType) |
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| itkGetInputMacro (MovingImage, MovingImageType) |
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| itkSetInputMacro (FixedImage, FixedImageType) |
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| itkSetInputMacro (InitialDisplacementField, DisplacementFieldType) |
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| itkSetInputMacro (MovingImage, MovingImageType) |
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virtual void | StopRegistration () |
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virtual void | SetSmoothDisplacementField (bool _arg) |
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virtual bool | GetSmoothDisplacementField () const |
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virtual void | SmoothDisplacementFieldOn () |
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virtual void | SetStandardDeviations (StandardDeviationsType _arg) |
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virtual void | SetStandardDeviations (double value) |
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virtual void | SetSmoothUpdateField (bool _arg) |
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virtual bool | GetSmoothUpdateField () const |
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virtual void | SmoothUpdateFieldOn () |
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virtual void | SetUpdateFieldStandardDeviations (StandardDeviationsType _arg) |
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virtual void | SetUpdateFieldStandardDeviations (double value) |
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virtual void | SetMaximumError (double _arg) |
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virtual double | GetMaximumError () const |
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virtual void | SetMaximumKernelWidth (unsigned int _arg) |
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virtual unsigned int | GetMaximumKernelWidth () const |
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const char * | GetNameOfClass () const override |
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virtual const FiniteDifferenceFunctionType::Pointer & | GetDifferenceFunction () const |
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virtual const IdentifierType & | GetElapsedIterations () const |
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virtual bool | GetIsInitialized () |
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const char * | GetNameOfClass () const override |
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virtual void | SetDifferenceFunction (FiniteDifferenceFunctionType *_arg) |
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virtual void | SetIsInitialized (bool _arg) |
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void | SetStateToInitialized () |
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void | SetStateToUninitialized () |
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virtual void | SetNumberOfIterations (IdentifierType _arg) |
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virtual const IdentifierType & | GetNumberOfIterations () const |
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virtual void | SetUseImageSpacing (bool _arg) |
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virtual void | UseImageSpacingOn () |
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virtual const bool & | GetUseImageSpacing () const |
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virtual void | SetMaximumRMSError (double _arg) |
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virtual const double & | GetMaximumRMSError () const |
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virtual void | SetRMSChange (double _arg) |
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virtual const double & | GetRMSChange () const |
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virtual void | SetManualReinitialization (bool _arg) |
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virtual const bool & | GetManualReinitialization () const |
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virtual void | ManualReinitializationOn () |
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virtual bool | CanRunInPlace () const |
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const char * | GetNameOfClass () const override |
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virtual void | SetInPlace (bool _arg) |
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virtual bool | GetInPlace () const |
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virtual void | InPlaceOn () |
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const InputImageType * | GetInput () const |
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const InputImageType * | GetInput (unsigned int idx) const |
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const char * | GetNameOfClass () const override |
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void | PopBackInput () override |
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void | PopFrontInput () override |
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virtual void | PushBackInput (const InputImageType *input) |
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virtual void | PushFrontInput (const InputImageType *input) |
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virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
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virtual void | SetInput (const InputImageType *input) |
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virtual void | SetInput (unsigned int, const TDisplacementField *image) |
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virtual void | SetCoordinateTolerance (double _arg) |
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virtual double | GetCoordinateTolerance () const |
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virtual void | SetDirectionTolerance (double _arg) |
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virtual double | GetDirectionTolerance () const |
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const char * | GetNameOfClass () const override |
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OutputImageType * | GetOutput (unsigned int idx) |
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OutputImageType * | GetOutput () |
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const OutputImageType * | GetOutput () const |
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virtual void | GraftOutput (DataObject *graft) |
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virtual void | GraftOutput (const DataObjectIdentifierType &key, DataObject *graft) |
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virtual void | GraftNthOutput (unsigned int idx, DataObject *graft) |
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ProcessObject::DataObjectPointer | MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override |
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ProcessObject::DataObjectPointer | MakeOutput (const ProcessObject::DataObjectIdentifierType &) override |
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virtual void | AbortGenerateDataOn () |
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virtual void | EnlargeOutputRequestedRegion (DataObject *) |
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virtual const bool & | GetAbortGenerateData () const |
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DataObjectPointerArray | GetIndexedInputs () |
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DataObjectPointerArray | GetIndexedOutputs () |
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NameArray | GetInputNames () const |
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DataObjectPointerArray | GetInputs () |
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MultiThreaderType * | GetMultiThreader () const |
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const char * | GetNameOfClass () const override |
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DataObjectPointerArraySizeType | GetNumberOfIndexedInputs () const |
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DataObjectPointerArraySizeType | GetNumberOfIndexedOutputs () const |
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DataObjectPointerArraySizeType | GetNumberOfInputs () const |
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DataObjectPointerArraySizeType | GetNumberOfOutputs () const |
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virtual DataObjectPointerArraySizeType | GetNumberOfValidRequiredInputs () const |
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NameArray | GetOutputNames () const |
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DataObjectPointerArray | GetOutputs () |
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virtual float | GetProgress () const |
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NameArray | GetRequiredInputNames () const |
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bool | HasInput (const DataObjectIdentifierType &key) const |
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bool | HasOutput (const DataObjectIdentifierType &key) const |
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void | IncrementProgress (float increment) |
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virtual DataObjectPointer | MakeOutput (const DataObjectIdentifierType &) |
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virtual DataObjectPointer | MakeOutput (DataObjectPointerArraySizeType idx) |
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virtual void | PrepareOutputs () |
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virtual void | PropagateRequestedRegion (DataObject *output) |
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virtual void | ResetPipeline () |
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virtual void | SetAbortGenerateData (bool _arg) |
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void | SetMultiThreader (MultiThreaderType *threader) |
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virtual void | Update () |
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virtual void | UpdateLargestPossibleRegion () |
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virtual void | UpdateOutputData (DataObject *output) |
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virtual void | UpdateOutputInformation () |
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void | UpdateProgress (float progress) |
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virtual void | SetReleaseDataFlag (bool val) |
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virtual bool | GetReleaseDataFlag () const |
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void | ReleaseDataFlagOn () |
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void | ReleaseDataFlagOff () |
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virtual void | SetReleaseDataBeforeUpdateFlag (bool _arg) |
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virtual const bool & | GetReleaseDataBeforeUpdateFlag () const |
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virtual void | ReleaseDataBeforeUpdateFlagOn () |
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virtual void | SetNumberOfWorkUnits (ThreadIdType _arg) |
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virtual const ThreadIdType & | GetNumberOfWorkUnits () const |
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unsigned long | AddObserver (const EventObject &event, Command *cmd) const |
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unsigned long | AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const |
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LightObject::Pointer | CreateAnother () const override |
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virtual void | DebugOff () const |
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virtual void | DebugOn () const |
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Command * | GetCommand (unsigned long tag) |
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bool | GetDebug () const |
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MetaDataDictionary & | GetMetaDataDictionary () |
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const MetaDataDictionary & | GetMetaDataDictionary () const |
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virtual ModifiedTimeType | GetMTime () const |
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const char * | GetNameOfClass () const override |
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virtual const TimeStamp & | GetTimeStamp () const |
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bool | HasObserver (const EventObject &event) const |
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void | InvokeEvent (const EventObject &) |
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void | InvokeEvent (const EventObject &) const |
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virtual void | Modified () const |
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void | Register () const override |
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void | RemoveAllObservers () |
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void | RemoveObserver (unsigned long tag) const |
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void | SetDebug (bool debugFlag) const |
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void | SetReferenceCount (int) override |
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void | UnRegister () const noexcept override |
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void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
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void | SetMetaDataDictionary (MetaDataDictionary &&rrhs) |
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virtual void | SetObjectName (std::string _arg) |
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virtual const std::string & | GetObjectName () const |
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Pointer | Clone () const |
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virtual Pointer | CreateAnother () const |
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virtual void | Delete () |
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virtual const char * | GetNameOfClass () const |
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virtual int | GetReferenceCount () const |
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void | Print (std::ostream &os, Indent indent=0) const |
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virtual void | Register () const |
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virtual void | SetReferenceCount (int) |
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virtual void | UnRegister () const noexcept |
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void | ApplyUpdate (const TimeStepType &dt) override |
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| DemonsRegistrationFilter () |
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void | InitializeIteration () override |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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void | VerifyInputInformation () const override |
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| ~DemonsRegistrationFilter () override=default |
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void | CopyInputToOutput () override |
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void | GenerateInputRequestedRegion () override |
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void | GenerateOutputInformation () override |
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bool | Halt () override |
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void | Initialize () override |
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void | InitializeIteration () override |
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| PDEDeformableRegistrationFilter () |
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void | PostProcessOutput () override |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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virtual void | SmoothDisplacementField () |
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virtual void | SmoothUpdateField () |
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| ~PDEDeformableRegistrationFilter () override=default |
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void | AllocateUpdateBuffer () override |
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void | ApplyUpdate (const TimeStepType &dt) override |
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TimeStepType | CalculateChange () override |
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void | CopyInputToOutput () override |
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| DenseFiniteDifferenceImageFilter () |
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virtual UpdateBufferType * | GetUpdateBuffer () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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virtual void | ThreadedApplyUpdate (const TimeStepType &dt, const ThreadRegionType ®ionToProcess, ThreadIdType threadId) |
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virtual TimeStepType | ThreadedCalculateChange (const ThreadRegionType ®ionToProcess, ThreadIdType threadId) |
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| ~DenseFiniteDifferenceImageFilter () override=default |
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virtual void | AllocateUpdateBuffer ()=0 |
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virtual void | ApplyUpdate (const TimeStepType &dt)=0 |
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virtual TimeStepType | CalculateChange ()=0 |
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virtual void | CopyInputToOutput ()=0 |
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| FiniteDifferenceImageFilter () |
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void | GenerateData () override |
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void | GenerateInputRequestedRegion () override |
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virtual bool | Halt () |
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virtual void | Initialize () |
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virtual void | InitializeIteration () |
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virtual void | PostProcessOutput () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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virtual TimeStepType | ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const BooleanStdVectorType &valid) const |
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virtual void | SetElapsedIterations (IdentifierType _arg) |
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virtual bool | ThreadedHalt (void *) |
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| ~FiniteDifferenceImageFilter () override=default |
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virtual bool | GetRunningInPlace () const |
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| InPlaceImageFilter ()=default |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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void | ReleaseInputs () override |
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| ~InPlaceImageFilter () override=default |
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void | AllocateOutputs () override |
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virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
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virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
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void | GenerateInputRequestedRegion () override |
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| ImageToImageFilter () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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void | VerifyInputInformation () const override |
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| ~ImageToImageFilter () override=default |
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virtual void | PushBackInput (const DataObject *input) |
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virtual void | PushFrontInput (const DataObject *input) |
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virtual void | AfterThreadedGenerateData () |
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virtual void | AllocateOutputs () |
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virtual void | BeforeThreadedGenerateData () |
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void | ClassicMultiThread (ThreadFunctionType callbackFunction) |
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void | GenerateData () override |
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virtual const ImageRegionSplitterBase * | GetImageRegionSplitter () const |
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| ImageSource () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion) |
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| ~ImageSource () override=default |
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virtual void | ThreadedGenerateData (const OutputImageRegionType ®ion, ThreadIdType threadId) |
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virtual void | DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) |
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virtual bool | GetDynamicMultiThreading () const |
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virtual void | SetDynamicMultiThreading (bool _arg) |
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virtual void | DynamicMultiThreadingOn () |
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virtual void | AddInput (DataObject *input) |
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void | AddOptionalInputName (const DataObjectIdentifierType &) |
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void | AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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virtual void | AddOutput (DataObject *output) |
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bool | AddRequiredInputName (const DataObjectIdentifierType &) |
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bool | AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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virtual void | CacheInputReleaseDataFlags () |
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virtual void | GenerateData () |
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virtual void | GenerateInputRequestedRegion () |
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virtual void | GenerateOutputInformation () |
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virtual void | GenerateOutputRequestedRegion (DataObject *output) |
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DataObject * | GetInput (const DataObjectIdentifierType &key) |
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const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
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virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () const |
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virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () const |
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bool | IsIndexedInputName (const DataObjectIdentifierType &) const |
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bool | IsIndexedOutputName (const DataObjectIdentifierType &) const |
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bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
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DataObjectPointerArraySizeType | MakeIndexFromInputName (const DataObjectIdentifierType &name) const |
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DataObjectPointerArraySizeType | MakeIndexFromOutputName (const DataObjectIdentifierType &name) const |
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DataObjectIdentifierType | MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const |
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DataObjectIdentifierType | MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const |
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virtual void | PopBackInput () |
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virtual void | PopFrontInput () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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| ProcessObject () |
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virtual void | PropagateResetPipeline () |
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virtual void | PushBackInput (const DataObject *input) |
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virtual void | PushFrontInput (const DataObject *input) |
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virtual void | ReleaseInputs () |
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virtual void | RemoveInput (const DataObjectIdentifierType &key) |
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virtual void | RemoveInput (DataObjectPointerArraySizeType) |
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virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
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virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
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bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
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virtual void | RestoreInputReleaseDataFlags () |
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virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
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virtual void | SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input) |
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virtual void | SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output) |
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void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
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void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
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virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
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virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
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virtual void | SetOutput (const DataObjectIdentifierType &name, DataObject *output) |
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virtual void | SetPrimaryInput (DataObject *object) |
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virtual void | SetPrimaryOutput (DataObject *object) |
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void | SetRequiredInputNames (const NameArray &) |
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virtual void | VerifyInputInformation () const |
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virtual void | VerifyPreconditions () const |
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| ~ProcessObject () override |
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DataObject * | GetInput (DataObjectPointerArraySizeType idx) |
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const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
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DataObject * | GetPrimaryInput () |
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const DataObject * | GetPrimaryInput () const |
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virtual void | SetPrimaryInputName (const DataObjectIdentifierType &key) |
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virtual const char * | GetPrimaryInputName () const |
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DataObject * | GetOutput (const DataObjectIdentifierType &key) |
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const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
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virtual void | SetPrimaryOutputName (const DataObjectIdentifierType &key) |
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virtual const char * | GetPrimaryOutputName () const |
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DataObject * | GetOutput (DataObjectPointerArraySizeType i) |
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const DataObject * | GetOutput (DataObjectPointerArraySizeType i) const |
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DataObject * | GetPrimaryOutput () |
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const DataObject * | GetPrimaryOutput () const |
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virtual bool | GetThreaderUpdateProgress () const |
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virtual void | ThreaderUpdateProgressOn () |
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virtual void | SetThreaderUpdateProgress (bool arg) |
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| Object () |
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bool | PrintObservers (std::ostream &os, Indent indent) const |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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virtual void | SetTimeStamp (const TimeStamp &timeStamp) |
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| ~Object () override |
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virtual LightObject::Pointer | InternalClone () const |
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| LightObject () |
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virtual void | PrintHeader (std::ostream &os, Indent indent) const |
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virtual void | PrintSelf (std::ostream &os, Indent indent) const |
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virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
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virtual | ~LightObject () |
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