ITK
6.0.0
Insight Toolkit
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#include <itkGPUDemonsRegistrationFunction.h>
This class encapsulate the PDE which drives the demons registration algorithm. It is used by DemonsRegistrationFilter to compute the output deformation field which will map a moving image onto a a fixed image.
Non-integer moving image values are obtained by using interpolation. The default interpolator is of type LinearInterpolateImageFunction. The user may set other interpolators via method SetMovingImageInterpolator. Note that the input interpolator must derive from baseclass InterpolateImageFunction.
This class is templated over the fixed image type, moving image type, and the deformation field type.
Definition at line 58 of file itkGPUDemonsRegistrationFunction.h.
Classes | |
struct | GlobalDataStruct |
Static Public Member Functions | |
static Pointer | New () |
Static Public Member Functions inherited from itk::LightObject | |
static void | BreakOnError () |
static Pointer | New () |
Static Public Attributes | |
static constexpr unsigned int | ImageDimension = Superclass::ImageDimension |
Static Public Attributes inherited from itk::GPUFiniteDifferenceFunction< TDisplacementField > | |
static constexpr unsigned int | ImageDimension |
Static Public Attributes inherited from itk::FiniteDifferenceFunction< TDisplacementField > | |
static constexpr unsigned int | ImageDimension |
Protected Types | |
using | FixedImageNeighborhoodIteratorType = ConstNeighborhoodIterator< FixedImageType > |
Protected Member Functions | |
GPUDemonsRegistrationFunction () | |
void | PrintSelf (std::ostream &os, Indent indent) const override |
~GPUDemonsRegistrationFunction () override=default | |
Protected Member Functions inherited from itk::GPUPDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField > | |
GPUPDEDeformableRegistrationFunction () | |
void | PrintSelf (std::ostream &os, Indent indent) const override |
~GPUPDEDeformableRegistrationFunction () override=default | |
Protected Member Functions inherited from itk::GPUFiniteDifferenceFunction< TDisplacementField > | |
GPUFiniteDifferenceFunction () | |
~GPUFiniteDifferenceFunction () override=default | |
Protected Member Functions inherited from itk::FiniteDifferenceFunction< TDisplacementField > | |
FiniteDifferenceFunction () | |
void | PrintSelf (std::ostream &os, Indent indent) const override |
~FiniteDifferenceFunction () override=default | |
Protected Member Functions inherited from itk::LightObject | |
virtual LightObject::Pointer | InternalClone () const |
LightObject () | |
virtual void | PrintHeader (std::ostream &os, Indent indent) const |
virtual void | PrintSelf (std::ostream &os, Indent indent) const |
virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
virtual | ~LightObject () |
Protected Attributes | |
int | m_ComputeUpdateGPUKernelHandle {} |
Protected Attributes inherited from itk::GPUPDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField > | |
DisplacementFieldTypePointer | m_DisplacementField {} |
double | m_Energy {} |
FixedImagePointer | m_FixedImage {} |
double | m_GradientStep {} |
MovingImagePointer | m_MovingImage {} |
bool | m_NormalizeGradient {} |
Protected Attributes inherited from itk::GPUFiniteDifferenceFunction< TDisplacementField > | |
int | m_ComputeUpdateGPUKernelHandle |
GPUKernelManager::Pointer | m_GPUKernelManager |
Protected Attributes inherited from itk::FiniteDifferenceFunction< TDisplacementField > | |
RadiusType | m_Radius |
PixelRealType | m_ScaleCoefficients [ImageDimension] |
Protected Attributes inherited from itk::LightObject | |
std::atomic< int > | m_ReferenceCount {} |
Private Attributes | |
double | m_DenominatorThreshold {} |
GradientCalculatorPointer | m_FixedImageGradientCalculator {} |
GPUReduction< int >::Pointer | m_GPUPixelCounter {} |
GPUReduction< float >::Pointer | m_GPUSquaredChange {} |
GPUReduction< float >::Pointer | m_GPUSquaredDifference {} |
double | m_IntensityDifferenceThreshold {} |
double | m_Metric {} |
std::mutex | m_MetricCalculationMutex {} |
MovingImageGradientCalculatorPointer | m_MovingImageGradientCalculator {} |
InterpolatorPointer | m_MovingImageInterpolator {} |
double | m_Normalizer {} |
SizeValueType | m_NumberOfPixelsProcessed {} |
double | m_RMSChange {} |
double | m_SumOfSquaredChange {} |
double | m_SumOfSquaredDifference {} |
TimeStepType | m_TimeStep {} |
bool | m_UseMovingImageGradient {} |
PixelType | m_ZeroUpdateReturn {} |
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::ConstPointer = SmartPointer<const Self> |
Definition at line 68 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::CoordRepType = double |
Interpolator type.
Definition at line 102 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::CovariantVectorType = CovariantVector<double, Self::ImageDimension> |
Covariant vector type.
Definition at line 109 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::DefaultInterpolatorType = LinearInterpolateImageFunction<MovingImageType, CoordRepType> |
Definition at line 106 of file itkGPUDemonsRegistrationFunction.h.
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FixedImage image neighborhood iterator type.
Definition at line 243 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GPUDataPointer = GPUDataManager::Pointer |
GPU data pointer type.
Definition at line 120 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GradientCalculatorPointer = typename GradientCalculatorType::Pointer |
Definition at line 113 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::GradientCalculatorType = CentralDifferenceImageFunction<FixedImageType> |
Fixed image gradient calculator type.
Definition at line 112 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::IndexType = typename FixedImageType::IndexType |
Definition at line 83 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::InterpolatorPointer = typename InterpolatorType::Pointer |
Definition at line 104 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::InterpolatorType = InterpolateImageFunction<MovingImageType, CoordRepType> |
Definition at line 103 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::MovingImageGradientCalculatorPointer = typename MovingImageGradientCalculatorType::Pointer |
Definition at line 117 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::MovingImageGradientCalculatorType = CentralDifferenceImageFunction<MovingImageType, CoordRepType> |
Moving image gradient calculator type.
Definition at line 116 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::Pointer = SmartPointer<Self> |
Definition at line 67 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::PointType = typename InterpolatorType::PointType |
Definition at line 105 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::Self = GPUDemonsRegistrationFunction |
Standard class type aliases.
Definition at line 65 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::SizeType = typename FixedImageType::SizeType |
Definition at line 84 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::SpacingType = typename FixedImageType::SpacingType |
Definition at line 85 of file itkGPUDemonsRegistrationFunction.h.
using itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::Superclass = GPUPDEDeformableRegistrationFunction<TFixedImage, TMovingImage, TDisplacementField> |
Definition at line 66 of file itkGPUDemonsRegistrationFunction.h.
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This class uses a constant timestep of 1.
Implements itk::FiniteDifferenceFunction< TDisplacementField >.
Definition at line 141 of file itkGPUDemonsRegistrationFunction.h.
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Compute update at the specified neighbourhood.
Called by a finite difference solver image filter at each pixel that does not lie on a data set boundary.
Implements itk::FiniteDifferenceFunction< TDisplacementField >.
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Return a pointer to a global data structure that is passed to this object from the solver at each calculation.
Implements itk::FiniteDifferenceFunction< TDisplacementField >.
Definition at line 149 of file itkGPUDemonsRegistrationFunction.h.
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inlinevirtual |
Get the metric value.
The metric value is the mean square difference in intensity between the fixed image and transforming moving image computed over the overlapping region between the two images.
Definition at line 198 of file itkGPUDemonsRegistrationFunction.h.
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Get the moving image interpolator.
Definition at line 134 of file itkGPUDemonsRegistrationFunction.h.
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inlinevirtual |
Get the rms change in deformation field.
Definition at line 205 of file itkGPUDemonsRegistrationFunction.h.
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Select if the fixed image or moving image gradient is used for computing the demon forces. The fixed image gradient is used by default.
Definition at line 219 of file itkGPUDemonsRegistrationFunction.h.
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Allocate GPU buffers for computing metric statistics
Reimplemented from itk::GPUFiniteDifferenceFunction< TDisplacementField >.
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Compute update at the specified neighbourhood.
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Release GPU buffers for computing metric statistics.
Reimplemented from itk::GPUFiniteDifferenceFunction< TDisplacementField >.
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Set the object's state before each iteration.
Reimplemented from itk::FiniteDifferenceFunction< TDisplacementField >.
itk::GPUDemonsRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >::itkGetOpenCLSourceFromKernelMacro | ( | GPUDemonsRegistrationFunctionKernel | ) |
Get OpenCL Kernel source as a string, creates a GetOpenCLSource method
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Method for creation through the object factory.
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Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::GPUPDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDisplacementField >.
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Release memory for global data structure.
Updates the metric and releases the per-thread-global data.
Implements itk::FiniteDifferenceFunction< TDisplacementField >.
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Set/Get the threshold below which the absolute difference of intensity yields a match. When the intensities match between a moving and fixed image pixel, the update vector (for that iteration) will be the zero vector. Default is 0.001.
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Set the moving image interpolator.
Definition at line 127 of file itkGPUDemonsRegistrationFunction.h.
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inlinevirtual |
Select if the fixed image or moving image gradient is used for computing the demon forces. The fixed image gradient is used by default.
Definition at line 214 of file itkGPUDemonsRegistrationFunction.h.
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staticconstexpr |
Inherit some enums from the superclass.
Definition at line 92 of file itkGPUDemonsRegistrationFunction.h.
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Definition at line 255 of file itkGPUDemonsRegistrationFunction.h.
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Threshold below which the denominator term is considered zero.
Definition at line 278 of file itkGPUDemonsRegistrationFunction.h.
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Function to compute derivatives of the fixed image.
Definition at line 265 of file itkGPUDemonsRegistrationFunction.h.
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mutableprivate |
Definition at line 292 of file itkGPUDemonsRegistrationFunction.h.
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mutableprivate |
Definition at line 293 of file itkGPUDemonsRegistrationFunction.h.
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mutableprivate |
Definition at line 294 of file itkGPUDemonsRegistrationFunction.h.
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Threshold below which two intensity value are assumed to match.
Definition at line 281 of file itkGPUDemonsRegistrationFunction.h.
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The metric value is the mean square difference in intensity between the fixed image and transforming moving image computed over the the overlapping region between the two images.
Definition at line 286 of file itkGPUDemonsRegistrationFunction.h.
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Mutex lock to protect modification to metric.
Definition at line 297 of file itkGPUDemonsRegistrationFunction.h.
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Function to compute derivatives of the moving image.
Definition at line 268 of file itkGPUDemonsRegistrationFunction.h.
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Function to interpolate the moving image.
Definition at line 272 of file itkGPUDemonsRegistrationFunction.h.
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Definition at line 262 of file itkGPUDemonsRegistrationFunction.h.
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mutableprivate |
Definition at line 288 of file itkGPUDemonsRegistrationFunction.h.
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mutableprivate |
Definition at line 289 of file itkGPUDemonsRegistrationFunction.h.
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mutableprivate |
Definition at line 290 of file itkGPUDemonsRegistrationFunction.h.
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mutableprivate |
Definition at line 287 of file itkGPUDemonsRegistrationFunction.h.
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The global timestep.
Definition at line 275 of file itkGPUDemonsRegistrationFunction.h.
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Definition at line 269 of file itkGPUDemonsRegistrationFunction.h.
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Cache fixed image information.
Definition at line 261 of file itkGPUDemonsRegistrationFunction.h.