template<typename TPixel>
class itk::Hessian3DToVesselnessMeasureImageFilter< TPixel >
Line filter to provide a vesselness measure for tubular objects from the hessian matrix.
The filter takes as input an image of hessian pixels (SymmetricSecondRankTensor pixels) and preserves pixels that have eigen values \( \lambda_3 \) close to 0 and \(\lambda_2\) and \(\lambda_1\) as large negative values (for bright tubular structures).
\[ | \lambda_1 | < | \lambda_2 | < | \lambda_3 | \]
- Notes:
- The filter takes into account that the eigen values play a crucial role in discriminating shape and orientation of structures.
- Bright tubular structures will have low \(\lambda_1\) and large negative values of \(\lambda_2\) and \(\lambda_3\).
- Conversely dark tubular structures will have a low value of \(\lambda_1\) and large positive values of \(\lambda_2\) and \(\lambda_3\).
- Bright plate like structures have low values of \(\lambda_1\) and \(\lambda_2\) and large negative values of \(\lambda_3\)
- Dark plate like structures have low values of \(\lambda_1\) and \(\lambda_2\) and large positive values of \(\lambda_3\)
- Bright spherical (blob) like structures have all three eigen values as large negative numbers
- Dark spherical (blob) like structures have all three eigen values as large positive numbers
This filter is used to discriminate the Bright tubular structures.
- References:
- "3D Multi-scale line filter for segmentation and visualization of
curvilinear structures in medical images", Yoshinobu Sato, Shin Nakajima, Hideki Atsumi, Thomas Koller, Guido Gerig, Shigeyuki Yoshida, Ron Kikinis.
http://www.image.med.osaka-u.ac.jp/member/yoshi/paper/linefilter.pdf
- See also
- HessianRecursiveGaussianImageFilter
-
SymmetricEigenAnalysisImageFilter
-
SymmetricSecondRankTensor
- Examples
- Examples/Filtering/VesselnessMeasureImageFilter.cxx.
Definition at line 77 of file itkHessian3DToVesselnessMeasureImageFilter.h.
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| virtual::itk::LightObject::Pointer | CreateAnother () const |
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| virtual const char * | GetNameOfClass () const |
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| virtual void | SetAlpha1 (double _arg) |
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| virtual double | GetAlpha1 () const |
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| virtual void | SetAlpha2 (double _arg) |
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| virtual double | GetAlpha2 () const |
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| const InputImageType * | GetInput () const |
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| const InputImageType * | GetInput () const |
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| const InputImageType * | GetInput (unsigned int idx) const |
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| const InputImageType * | GetInput (unsigned int idx) const |
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| void | PopBackInput () override |
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| void | PopBackInput () override |
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| void | PopFrontInput () override |
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| void | PopFrontInput () override |
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| virtual void | PushBackInput (const InputImageType *input) |
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| virtual void | PushBackInput (const InputImageType *input) |
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| virtual void | PushFrontInput (const InputImageType *input) |
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| virtual void | PushFrontInput (const InputImageType *input) |
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| virtual void | SetInput (const InputImageType *input) |
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| virtual void | SetInput (const InputImageType *input) |
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| virtual void | SetInput (unsigned int, const Image< SymmetricSecondRankTensor< double, 3 >, 3 > *image) |
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| virtual void | SetInput (unsigned int, const Image< SymmetricSecondRankTensor< double, 3 >, 3 > *image) |
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| virtual void | SetCoordinateTolerance (double _arg) |
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| virtual double | GetCoordinateTolerance () const |
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| virtual void | SetCoordinateTolerance (double _arg) |
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| virtual double | GetCoordinateTolerance () const |
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| virtual void | SetDirectionTolerance (double _arg) |
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| virtual double | GetDirectionTolerance () const |
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| virtual void | SetDirectionTolerance (double _arg) |
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| virtual double | GetDirectionTolerance () const |
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| OutputImageType * | GetOutput (unsigned int idx) |
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| virtual void | GraftNthOutput (unsigned int idx, DataObject *graft) |
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| virtual void | GraftOutput (const DataObjectIdentifierType &key, DataObject *graft) |
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| virtual void | GraftOutput (DataObject *graft) |
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| OutputImageType * | GetOutput () |
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| const OutputImageType * | GetOutput () const |
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| ProcessObject::DataObjectPointer | MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override |
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| ProcessObject::DataObjectPointer | MakeOutput (const ProcessObject::DataObjectIdentifierType &) override |
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| virtual void | AbortGenerateDataOff () |
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| virtual void | AbortGenerateDataOn () |
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| virtual void | EnlargeOutputRequestedRegion (DataObject *output) |
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| virtual const bool & | GetAbortGenerateData () const |
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| DataObjectPointerArray | GetIndexedInputs () |
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| DataObjectPointerArray | GetIndexedOutputs () |
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| NameArray | GetInputNames () const |
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| DataObjectPointerArray | GetInputs () |
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| MultiThreaderType * | GetMultiThreader () const |
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| DataObjectPointerArraySizeType | GetNumberOfIndexedInputs () const |
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| DataObjectPointerArraySizeType | GetNumberOfIndexedOutputs () const |
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| DataObjectPointerArraySizeType | GetNumberOfInputs () const |
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| DataObjectPointerArraySizeType | GetNumberOfOutputs () const |
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| virtual DataObjectPointerArraySizeType | GetNumberOfValidRequiredInputs () const |
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| NameArray | GetOutputNames () const |
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| DataObjectPointerArray | GetOutputs () |
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| virtual float | GetProgress () const |
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| NameArray | GetRequiredInputNames () const |
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| bool | HasInput (const DataObjectIdentifierType &key) const |
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| bool | HasOutput (const DataObjectIdentifierType &key) const |
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| void | IncrementProgress (float increment) |
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| virtual void | PrepareOutputs () |
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| virtual void | PropagateRequestedRegion (DataObject *output) |
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| virtual void | ResetPipeline () |
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| virtual void | SetAbortGenerateData (bool _arg) |
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| void | SetMultiThreader (MultiThreaderType *threader) |
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| virtual void | Update () |
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| virtual void | UpdateLargestPossibleRegion () |
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| virtual void | UpdateOutputData (DataObject *output) |
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| virtual void | UpdateOutputInformation () |
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| void | UpdateProgress (float progress) |
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| virtual void | SetReleaseDataFlag (bool val) |
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| virtual bool | GetReleaseDataFlag () const |
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| void | ReleaseDataFlagOn () |
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| void | ReleaseDataFlagOff () |
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| virtual void | SetReleaseDataBeforeUpdateFlag (bool _arg) |
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| virtual const bool & | GetReleaseDataBeforeUpdateFlag () const |
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| virtual void | ReleaseDataBeforeUpdateFlagOn () |
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| virtual void | ReleaseDataBeforeUpdateFlagOff () |
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| virtual void | SetNumberOfWorkUnits (ThreadIdType _arg) |
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| virtual const ThreadIdType & | GetNumberOfWorkUnits () const |
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| unsigned long | AddObserver (const EventObject &event, Command *cmd) const |
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| unsigned long | AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const |
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| LightObject::Pointer | CreateAnother () const override |
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| virtual void | DebugOff () const |
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| virtual void | DebugOn () const |
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| Command * | GetCommand (unsigned long tag) |
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| bool | GetDebug () const |
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| MetaDataDictionary & | GetMetaDataDictionary () |
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| const MetaDataDictionary & | GetMetaDataDictionary () const |
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| virtual ModifiedTimeType | GetMTime () const |
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| virtual const TimeStamp & | GetTimeStamp () const |
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| bool | HasObserver (const EventObject &event) const |
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| void | InvokeEvent (const EventObject &) |
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| void | InvokeEvent (const EventObject &) const |
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| virtual void | Modified () const |
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| void | Register () const override |
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| void | RemoveAllObservers () |
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| void | RemoveObserver (unsigned long tag) const |
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| void | SetDebug (bool debugFlag) const |
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| void | SetReferenceCount (int) override |
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| void | UnRegister () const noexcept override |
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| void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
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| void | SetMetaDataDictionary (MetaDataDictionary &&rrhs) |
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| virtual void | SetObjectName (std::string _arg) |
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| virtual const std::string & | GetObjectName () const |
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| Pointer | Clone () const |
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| virtual void | Delete () |
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| virtual int | GetReferenceCount () const |
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| void | Print (std::ostream &os, Indent indent=0) const |
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| void | GenerateData () override |
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| | Hessian3DToVesselnessMeasureImageFilter () |
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| void | PrintSelf (std::ostream &os, Indent indent) const override |
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| | ~Hessian3DToVesselnessMeasureImageFilter () override=default |
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| virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
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| virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
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| virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
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| virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
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| void | GenerateInputRequestedRegion () override |
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| void | GenerateInputRequestedRegion () override |
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| | ImageToImageFilter () |
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| | ImageToImageFilter () |
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| void | PrintSelf (std::ostream &os, Indent indent) const override |
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| void | PrintSelf (std::ostream &os, Indent indent) const override |
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| void | VerifyInputInformation () const override |
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| void | VerifyInputInformation () const override |
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| | ~ImageToImageFilter () override=default |
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| | ~ImageToImageFilter () override=default |
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| virtual void | AfterThreadedGenerateData () |
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| virtual void | AllocateOutputs () |
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| virtual void | BeforeThreadedGenerateData () |
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| void | ClassicMultiThread (ThreadFunctionType callbackFunction) |
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| void | GenerateData () override |
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| virtual const ImageRegionSplitterBase * | GetImageRegionSplitter () const |
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| | ImageSource () |
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| virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion) |
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| | ~ImageSource () override=default |
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| virtual void | ThreadedGenerateData (const OutputImageRegionType ®ion, ThreadIdType threadId) |
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| virtual void | DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) |
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| virtual bool | GetDynamicMultiThreading () const |
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| virtual void | SetDynamicMultiThreading (bool _arg) |
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| virtual void | DynamicMultiThreadingOn () |
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| virtual void | DynamicMultiThreadingOff () |
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| virtual void | AddInput (DataObject *input) |
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| void | AddOptionalInputName (const DataObjectIdentifierType &) |
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| void | AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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| virtual void | AddOutput (DataObject *output) |
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| bool | AddRequiredInputName (const DataObjectIdentifierType &) |
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| bool | AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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| virtual void | CacheInputReleaseDataFlags () |
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| virtual void | GenerateOutputInformation () |
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| virtual void | GenerateOutputRequestedRegion (DataObject *output) |
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| DataObject * | GetInput (const DataObjectIdentifierType &key) |
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| const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
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| virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () const |
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| virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () const |
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| bool | IsIndexedInputName (const DataObjectIdentifierType &) const |
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| bool | IsIndexedOutputName (const DataObjectIdentifierType &) const |
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| bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
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| DataObjectPointerArraySizeType | MakeIndexFromInputName (const DataObjectIdentifierType &name) const |
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| DataObjectPointerArraySizeType | MakeIndexFromOutputName (const DataObjectIdentifierType &name) const |
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| DataObjectIdentifierType | MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const |
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| DataObjectIdentifierType | MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const |
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| void | PrintSelf (std::ostream &os, Indent indent) const override |
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| | ProcessObject () |
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| virtual void | PropagateResetPipeline () |
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| virtual void | PushBackInput (const DataObject *input) |
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| virtual void | PushFrontInput (const DataObject *input) |
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| virtual void | ReleaseInputs () |
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| virtual void | RemoveInput (const DataObjectIdentifierType &key) |
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| virtual void | RemoveInput (DataObjectPointerArraySizeType) |
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| virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
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| virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
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| bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
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| virtual void | RestoreInputReleaseDataFlags () |
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| virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
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| virtual void | SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input) |
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| virtual void | SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output) |
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| void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
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| void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
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| virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
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| virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
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| virtual void | SetOutput (const DataObjectIdentifierType &name, DataObject *output) |
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| virtual void | SetPrimaryInput (DataObject *object) |
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| virtual void | SetPrimaryOutput (DataObject *object) |
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| void | SetRequiredInputNames (const NameArray &) |
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| virtual void | VerifyPreconditions () const |
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| | ~ProcessObject () override |
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| DataObject * | GetInput (DataObjectPointerArraySizeType idx) |
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| const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
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| DataObject * | GetPrimaryInput () |
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| const DataObject * | GetPrimaryInput () const |
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| virtual void | SetPrimaryInputName (const DataObjectIdentifierType &key) |
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| virtual const char * | GetPrimaryInputName () const |
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| DataObject * | GetOutput (const DataObjectIdentifierType &key) |
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| const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
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| virtual void | SetPrimaryOutputName (const DataObjectIdentifierType &key) |
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| virtual const char * | GetPrimaryOutputName () const |
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| DataObject * | GetOutput (DataObjectPointerArraySizeType i) |
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| const DataObject * | GetOutput (DataObjectPointerArraySizeType i) const |
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| DataObject * | GetPrimaryOutput () |
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| const DataObject * | GetPrimaryOutput () const |
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| virtual bool | GetThreaderUpdateProgress () const |
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| virtual void | ThreaderUpdateProgressOn () |
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| virtual void | ThreaderUpdateProgressOff () |
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| virtual void | SetThreaderUpdateProgress (bool arg) |
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| | Object () |
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| bool | PrintObservers (std::ostream &os, Indent indent) const |
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| virtual void | SetTimeStamp (const TimeStamp &timeStamp) |
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| | ~Object () override |
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| virtual LightObject::Pointer | InternalClone () const |
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| | LightObject () |
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| virtual void | PrintHeader (std::ostream &os, Indent indent) const |
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| virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
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| virtual | ~LightObject () |
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