template<typename TInputImage, typename TOutputImage>
class itk::IsolatedConnectedImageFilter< TInputImage, TOutputImage >
Label pixels that are connected to one set of seeds but not another.
IsolatedConnectedImageFilter finds the optimal threshold to separate two regions. It has two modes, one to separate dark regions surrounded by bright regions by automatically finding a minimum isolating upper threshold, and another to separate bright regions surrounded by dark regions by automatically finding a maximum lower isolating threshold. The mode can be chosen by setting FindUpperThresholdOn()/Off(). In both cases, the isolating threshold is retrieved with GetIsolatedValue().
The algorithm labels pixels with ReplaceValue that are connected to Seeds1 AND NOT connected to Seeds2. When finding the threshold to separate two dark regions surrounded by bright regions, given a fixed lower threshold, the filter adjusts the upper threshold until the two sets of seeds are not connected. The algorithm uses a binary search to adjust the upper threshold, starting at Upper. The reverse is true for finding the threshold to separate two bright regions. Lower defaults to the smallest possible value for the InputImagePixelType, and Upper defaults to the largest possible value for the InputImagePixelType.
The user can also supply the Lower and Upper values to restrict the search. However, if the range is too restrictive, it could happen that no isolating threshold can be found between the user specified Lower and Upper values. Therefore, unless the user is sure of the bounds to set, it is recommended that the user set these values to the lowest and highest intensity values in the image, respectively.
The user can specify more than one seed for both regions to separate. The algorithm will try find the threshold that ensures that all of the first seeds are contained in the resulting segmentation and all of the second seeds are not contained in the segmentation.
It is possible that the algorithm may not be able to find the isolating threshold because no such threshold exists. The user can check for this by querying the GetThresholdingFailed() flag.
Definition at line 72 of file itkIsolatedConnectedImageFilter.h.
|
void | EnlargeOutputRequestedRegion (DataObject *output) override |
|
void | GenerateData () override |
|
void | GenerateInputRequestedRegion () override |
|
| IsolatedConnectedImageFilter () |
|
| ~IsolatedConnectedImageFilter () override=default |
|
virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
|
virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
|
void | GenerateInputRequestedRegion () override |
|
| ImageToImageFilter () |
|
void | PrintSelf (std::ostream &os, Indent indent) const override |
|
void | VerifyInputInformation () const override |
|
| ~ImageToImageFilter () override=default |
|
virtual void | PushBackInput (const DataObject *input) |
|
virtual void | PushFrontInput (const DataObject *input) |
|
virtual void | AfterThreadedGenerateData () |
|
virtual void | AllocateOutputs () |
|
virtual void | BeforeThreadedGenerateData () |
|
void | ClassicMultiThread (ThreadFunctionType callbackFunction) |
|
void | GenerateData () override |
|
virtual const ImageRegionSplitterBase * | GetImageRegionSplitter () const |
|
| ImageSource () |
|
void | PrintSelf (std::ostream &os, Indent indent) const override |
|
virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion) |
|
| ~ImageSource () override=default |
|
virtual void | ThreadedGenerateData (const OutputImageRegionType ®ion, ThreadIdType threadId) |
|
virtual void | DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) |
|
virtual bool | GetDynamicMultiThreading () const |
|
virtual void | SetDynamicMultiThreading (bool _arg) |
|
virtual void | DynamicMultiThreadingOn () |
|
virtual void | AddInput (DataObject *input) |
|
void | AddOptionalInputName (const DataObjectIdentifierType &) |
|
void | AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
|
virtual void | AddOutput (DataObject *output) |
|
bool | AddRequiredInputName (const DataObjectIdentifierType &) |
|
bool | AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
|
virtual void | CacheInputReleaseDataFlags () |
|
virtual void | GenerateData () |
|
virtual void | GenerateInputRequestedRegion () |
|
virtual void | GenerateOutputInformation () |
|
virtual void | GenerateOutputRequestedRegion (DataObject *output) |
|
DataObject * | GetInput (const DataObjectIdentifierType &key) |
|
const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
|
virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () const |
|
virtual const DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () const |
|
bool | IsIndexedInputName (const DataObjectIdentifierType &) const |
|
bool | IsIndexedOutputName (const DataObjectIdentifierType &) const |
|
bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
|
DataObjectPointerArraySizeType | MakeIndexFromInputName (const DataObjectIdentifierType &name) const |
|
DataObjectPointerArraySizeType | MakeIndexFromOutputName (const DataObjectIdentifierType &name) const |
|
DataObjectIdentifierType | MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const |
|
DataObjectIdentifierType | MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const |
|
virtual void | PopBackInput () |
|
virtual void | PopFrontInput () |
|
void | PrintSelf (std::ostream &os, Indent indent) const override |
|
| ProcessObject () |
|
virtual void | PropagateResetPipeline () |
|
virtual void | PushBackInput (const DataObject *input) |
|
virtual void | PushFrontInput (const DataObject *input) |
|
virtual void | ReleaseInputs () |
|
virtual void | RemoveInput (const DataObjectIdentifierType &key) |
|
virtual void | RemoveInput (DataObjectPointerArraySizeType) |
|
virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
|
virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
|
bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
|
virtual void | RestoreInputReleaseDataFlags () |
|
virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
|
virtual void | SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input) |
|
virtual void | SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output) |
|
void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
|
void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
|
virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
|
virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
|
virtual void | SetOutput (const DataObjectIdentifierType &name, DataObject *output) |
|
virtual void | SetPrimaryInput (DataObject *object) |
|
virtual void | SetPrimaryOutput (DataObject *object) |
|
void | SetRequiredInputNames (const NameArray &) |
|
virtual void | VerifyInputInformation () const |
|
virtual void | VerifyPreconditions () const |
|
| ~ProcessObject () override |
|
DataObject * | GetInput (DataObjectPointerArraySizeType idx) |
|
const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
|
DataObject * | GetPrimaryInput () |
|
const DataObject * | GetPrimaryInput () const |
|
virtual void | SetPrimaryInputName (const DataObjectIdentifierType &key) |
|
virtual const char * | GetPrimaryInputName () const |
|
DataObject * | GetOutput (const DataObjectIdentifierType &key) |
|
const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
|
virtual void | SetPrimaryOutputName (const DataObjectIdentifierType &key) |
|
virtual const char * | GetPrimaryOutputName () const |
|
DataObject * | GetOutput (DataObjectPointerArraySizeType i) |
|
const DataObject * | GetOutput (DataObjectPointerArraySizeType i) const |
|
DataObject * | GetPrimaryOutput () |
|
const DataObject * | GetPrimaryOutput () const |
|
virtual bool | GetThreaderUpdateProgress () const |
|
virtual void | ThreaderUpdateProgressOn () |
|
virtual void | SetThreaderUpdateProgress (bool arg) |
|
| Object () |
|
bool | PrintObservers (std::ostream &os, Indent indent) const |
|
void | PrintSelf (std::ostream &os, Indent indent) const override |
|
virtual void | SetTimeStamp (const TimeStamp &timeStamp) |
|
| ~Object () override |
|
virtual LightObject::Pointer | InternalClone () const |
|
| LightObject () |
|
virtual void | PrintHeader (std::ostream &os, Indent indent) const |
|
virtual void | PrintSelf (std::ostream &os, Indent indent) const |
|
virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
|
virtual | ~LightObject () |
|