itk::LabelOverlapMeasuresImageFilter< TLabelImage > Class Template Reference

#include <itkLabelOverlapMeasuresImageFilter.h>

Detailed Description

template<typename TLabelImage>
class itk::LabelOverlapMeasuresImageFilter< TLabelImage >

Computes overlap measures between the same set of labels of pixels of two images. Background is assumed to be 0.

This code was contributed in the Insight Journal paper: "Introducing Dice, Jaccard, and Other Label Overlap Measures To ITK" by Nicholas J. Tustison, James C. Gee https://doi.org/10.54294/1vixgg

Author

Nicholas J. Tustison

See also

LabelOverlapMeasuresImageFilter

Definition at line 45 of file itkLabelOverlapMeasuresImageFilter.h.

Inheritance diagram for itk::LabelOverlapMeasuresImageFilter< TLabelImage >:

Collaboration diagram for itk::LabelOverlapMeasuresImageFilter< TLabelImage >:

Classes
class	LabelSetMeasures

Public Types
using	ConstPointer = SmartPointer<const Self>
using	IndexType = typename TLabelImage::IndexType
using	LabelImageConstPointer = typename TLabelImage::ConstPointer
using	LabelImagePointer = typename TLabelImage::Pointer
using	LabelImageType = TLabelImage
using	LabelType = typename TLabelImage::PixelType
using	MapConstIterator = typename MapType::const_iterator
using	MapIterator = typename MapType::iterator
using	MapType = std::unordered_map<LabelType, LabelSetMeasures>
using	Pointer = SmartPointer<Self>
using	RealType = typename NumericTraits<LabelType>::RealType
using	RegionType = typename TLabelImage::RegionType
using	Self = LabelOverlapMeasuresImageFilter
using	SizeType = typename TLabelImage::SizeType
using	Superclass = ImageSink<TLabelImage>
Public Types inherited from itk::ImageSink< TLabelImage >
using	ConstPointer
using	DataObjectPointer
using	InputImagePixelType
using	InputImagePointer
using	InputImageRegionType
using	InputImageType
using	Pointer
using	RegionSplitterPointer
using	Self
using	SplitterType
using	Superclass
Public Types inherited from itk::StreamingProcessObject
using	ConstPointer = SmartPointer<const Self>
using	Pointer = SmartPointer<Self>
using	Self = StreamingProcessObject
using	Superclass = ProcessObject
Public Types inherited from itk::ProcessObject
using	ConstPointer = SmartPointer<const Self>
using	DataObjectIdentifierType = DataObject::DataObjectIdentifierType
using	DataObjectPointer = DataObject::Pointer
using	DataObjectPointerArray = std::vector<DataObjectPointer>
using	DataObjectPointerArraySizeType = DataObjectPointerArray::size_type
using	MultiThreaderType = MultiThreaderBase
using	NameArray = std::vector<DataObjectIdentifierType>
using	Pointer = SmartPointer<Self>
using	Self = ProcessObject
using	Superclass = Object
Public Types inherited from itk::Object
using	ConstPointer = SmartPointer<const Self>
using	Pointer = SmartPointer<Self>
using	Self = Object
using	Superclass = LightObject
Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer<const Self>
using	Pointer = SmartPointer<Self>
using	Self = LightObject

Public Member Functions
virtual::itk::LightObject::Pointer	CreateAnother () const
RealType	GetFalseDiscoveryRate () const
RealType	GetFalseDiscoveryRate (LabelType) const
RealType	GetFalseNegativeError () const
RealType	GetFalseNegativeError (LabelType) const
RealType	GetFalsePositiveError () const
RealType	GetFalsePositiveError (LabelType) const
MapType	GetLabelSetMeasures ()
const char *	GetNameOfClass () const override
RealType	GetTargetOverlap (LabelType) const
RealType	GetTotalOverlap () const
RealType	GetVolumeSimilarity () const
RealType	GetVolumeSimilarity (LabelType) const
	itkSetInputMacro (TargetImage, LabelImageType)
	itkGetInputMacro (TargetImage, LabelImageType)
	itkSetInputMacro (SourceImage, LabelImageType)
	itkGetInputMacro (SourceImage, LabelImageType)
RealType	GetUnionOverlap () const
RealType	GetJaccardCoefficient () const
RealType	GetUnionOverlap (LabelType) const
RealType	GetJaccardCoefficient (LabelType label) const
RealType	GetMeanOverlap () const
RealType	GetDiceCoefficient () const
RealType	GetMeanOverlap (LabelType) const
RealType	GetDiceCoefficient (LabelType label) const
Public Member Functions inherited from itk::ImageSink< TLabelImage >
virtual const InputImageType *	GetInput () const
virtual const InputImageType *	GetInput () const
virtual const InputImageType *	GetInput (const DataObjectIdentifierType &key) const
virtual const InputImageType *	GetInput (const DataObjectIdentifierType &key) const
virtual const InputImageType *	GetInput (unsigned int idx) const
virtual const InputImageType *	GetInput (unsigned int idx) const
virtual void	SetInput (const InputImageType *input)
virtual void	SetInput (const InputImageType *input)
void	Update () override
void	Update () override
void	UpdateLargestPossibleRegion () override
void	UpdateLargestPossibleRegion () override
virtual void	SetCoordinateTolerance (double _arg)
virtual double	GetCoordinateTolerance () const
virtual void	SetCoordinateTolerance (double _arg)
virtual double	GetCoordinateTolerance () const
virtual void	SetDirectionTolerance (double _arg)
virtual double	GetDirectionTolerance () const
virtual void	SetDirectionTolerance (double _arg)
virtual double	GetDirectionTolerance () const
Public Member Functions inherited from itk::StreamingProcessObject
void	GenerateData () override
virtual int	GetCurrentRequestNumber () const
const char *	GetNameOfClass () const override
void	PropagateRequestedRegion (DataObject *output) override
void	ResetPipeline () override
void	UpdateOutputData (DataObject *output) override
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *output)
virtual const bool &	GetAbortGenerateData () const
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
NameArray	GetInputNames () const
DataObjectPointerArray	GetInputs ()
MultiThreaderType *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
DataObjectPointerArray	GetOutputs ()
virtual float	GetProgress () const
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
void	IncrementProgress (float increment)
virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)
virtual DataObjectPointer	MakeOutput (DataObjectPointerArraySizeType idx)
virtual void	PrepareOutputs ()
virtual void	SetAbortGenerateData (bool _arg)
void	SetMultiThreader (MultiThreaderType *threader)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float progress)
virtual void	SetReleaseDataFlag (bool val)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag () const
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfWorkUnits (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfWorkUnits () const
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *cmd) const
unsigned long	AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const
LightObject::Pointer	CreateAnother () const override
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary ()
const MetaDataDictionary &	GetMetaDataDictionary () const
virtual ModifiedTimeType	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
void	Register () const override
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag) const
void	SetDebug (bool debugFlag) const
void	SetReferenceCount (int) override
void	UnRegister () const noexcept override
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
void	SetMetaDataDictionary (MetaDataDictionary &&rrhs)
virtual void	SetObjectName (std::string _arg)
virtual const std::string &	GetObjectName () const
Public Member Functions inherited from itk::LightObject
Pointer	Clone () const
virtual void	Delete ()
virtual int	GetReferenceCount () const
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::ImageSink< TLabelImage >
static double	GetGlobalDefaultCoordinateTolerance ()
static double	GetGlobalDefaultCoordinateTolerance ()
static double	GetGlobalDefaultDirectionTolerance ()
static double	GetGlobalDefaultDirectionTolerance ()
static void	SetGlobalDefaultCoordinateTolerance (double)
static void	SetGlobalDefaultCoordinateTolerance (double)
static void	SetGlobalDefaultDirectionTolerance (double)
static void	SetGlobalDefaultDirectionTolerance (double)
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool val)
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()

Static Public Attributes
static constexpr unsigned int	ImageDimension = TLabelImage::ImageDimension
Static Public Attributes inherited from itk::ImageSink< TLabelImage >
static constexpr unsigned int	InputImageDimension
static constexpr unsigned int	InputImageDimension

Protected Types
using	PrintType = typename NumericTraits<LabelType>::PrintType

Protected Member Functions
void	BeforeStreamedGenerateData () override
	LabelOverlapMeasuresImageFilter ()
void	MergeMap (MapType &m1, MapType &m2) const
void	PrintSelf (std::ostream &os, Indent indent) const override
void	ThreadedStreamedGenerateData (const RegionType &) override
	~LabelOverlapMeasuresImageFilter () override=default
Protected Member Functions inherited from itk::ImageSink< TLabelImage >
virtual void	AllocateOutputs ()
virtual void	AllocateOutputs ()
void	GenerateNthInputRequestedRegion (unsigned int inputRequestedRegionNumber) override
void	GenerateNthInputRequestedRegion (unsigned int inputRequestedRegionNumber) override
unsigned int	GetNumberOfInputRequestedRegions () override
unsigned int	GetNumberOfInputRequestedRegions () override
virtual unsigned int	GetNumberOfStreamDivisions () const
virtual unsigned int	GetNumberOfStreamDivisions () const
	ImageSink ()
	ImageSink ()
virtual void	SetNumberOfStreamDivisions (unsigned int _arg)
virtual void	SetNumberOfStreamDivisions (unsigned int _arg)
void	StreamedGenerateData (unsigned int inputRequestedRegionNumber) override
void	StreamedGenerateData (unsigned int inputRequestedRegionNumber) override
virtual void	ThreadedStreamedGenerateData (const InputImageRegionType &inputRegionForChunk)=0
virtual void	ThreadedStreamedGenerateData (const InputImageRegionType &inputRegionForChunk)=0
void	VerifyInputInformation () const override
void	VerifyInputInformation () const override
	~ImageSink () override=default
	~ImageSink () override=default
virtual void	SetRegionSplitter (SplitterType *_arg)
virtual SplitterType *	GetModifiableRegionSplitter ()
virtual const SplitterType *	GetRegionSplitter () const
virtual void	SetRegionSplitter (SplitterType *_arg)
virtual SplitterType *	GetModifiableRegionSplitter ()
virtual const SplitterType *	GetRegionSplitter () const
Protected Member Functions inherited from itk::StreamingProcessObject
virtual void	AfterStreamedGenerateData ()
void	PrintSelf (std::ostream &os, Indent indent) const override
	StreamingProcessObject ()
	~StreamingProcessObject () override
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
void	AddOptionalInputName (const DataObjectIdentifierType &)
void	AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateInputRequestedRegion ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const
bool	IsIndexedInputName (const DataObjectIdentifierType &) const
bool	IsIndexedOutputName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const
DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
virtual void	PopBackInput ()
virtual void	PopFrontInput ()
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	PushBackInput (const DataObject *input)
virtual void	PushFrontInput (const DataObject *input)
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &name, DataObject *output)
virtual void	SetPrimaryInput (DataObject *object)
virtual void	SetPrimaryOutput (DataObject *object)
void	SetRequiredInputNames (const NameArray &)
virtual void	VerifyPreconditions () const
	~ProcessObject () override
DataObject *	GetInput (DataObjectPointerArraySizeType idx)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryInputName () const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryOutputName () const
DataObject *	GetOutput (DataObjectPointerArraySizeType i)
const DataObject *	GetOutput (DataObjectPointerArraySizeType i) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
virtual bool	GetThreaderUpdateProgress () const
virtual void	ThreaderUpdateProgressOn ()
virtual void	ThreaderUpdateProgressOff ()
virtual void	SetThreaderUpdateProgress (bool arg)
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &timeStamp)
	~Object () override
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Attributes
MapType	m_LabelSetMeasures {}
std::mutex	m_Mutex {}

Additional Inherited Members
Static Protected Member Functions inherited from itk::ProcessObject
template<typename TSourceObject>
static void	MakeRequiredOutputs (TSourceObject &sourceObject, const DataObjectPointerArraySizeType numberOfRequiredOutputs)
static constexpr float	progressFixedToFloat (uint32_t fixed)
static uint32_t	progressFloatToFixed (float f)
Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime {}
bool	m_Updating {}
Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount {}

Member Typedef Documentation

ConstPointer

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::ConstPointer = SmartPointer<const Self>

Definition at line 54 of file itkLabelOverlapMeasuresImageFilter.h.

IndexType

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::IndexType = typename TLabelImage::IndexType

Definition at line 69 of file itkLabelOverlapMeasuresImageFilter.h.

LabelImageConstPointer

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImageConstPointer = typename TLabelImage::ConstPointer

Definition at line 65 of file itkLabelOverlapMeasuresImageFilter.h.

LabelImagePointer

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImagePointer = typename TLabelImage::Pointer

Definition at line 64 of file itkLabelOverlapMeasuresImageFilter.h.

LabelImageType

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImageType = TLabelImage

Image related type alias.

Definition at line 63 of file itkLabelOverlapMeasuresImageFilter.h.

LabelType

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelType = typename TLabelImage::PixelType

Definition at line 71 of file itkLabelOverlapMeasuresImageFilter.h.

MapConstIterator

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapConstIterator = typename MapType::const_iterator

Definition at line 96 of file itkLabelOverlapMeasuresImageFilter.h.

MapIterator

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapIterator = typename MapType::iterator

Definition at line 95 of file itkLabelOverlapMeasuresImageFilter.h.

MapType

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapType = std::unordered_map<LabelType, LabelSetMeasures>

Type of the map used to store data per label

Definition at line 94 of file itkLabelOverlapMeasuresImageFilter.h.

Pointer

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Pointer = SmartPointer<Self>

Definition at line 53 of file itkLabelOverlapMeasuresImageFilter.h.

PrintType

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::PrintType = typename NumericTraits<LabelType>::PrintType

protected

Type to use for printing label values (e.g. in warnings).

Definition at line 202 of file itkLabelOverlapMeasuresImageFilter.h.

RealType

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::RealType = typename NumericTraits<LabelType>::RealType

Type to use for computations.

Definition at line 74 of file itkLabelOverlapMeasuresImageFilter.h.

RegionType

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::RegionType = typename TLabelImage::RegionType

Definition at line 67 of file itkLabelOverlapMeasuresImageFilter.h.

Self

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Self = LabelOverlapMeasuresImageFilter

Standard Self type alias

Definition at line 51 of file itkLabelOverlapMeasuresImageFilter.h.

SizeType

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::SizeType = typename TLabelImage::SizeType

Definition at line 68 of file itkLabelOverlapMeasuresImageFilter.h.

Superclass

template<typename TLabelImage>

using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Superclass = ImageSink<TLabelImage>

Definition at line 52 of file itkLabelOverlapMeasuresImageFilter.h.

Constructor & Destructor Documentation

LabelOverlapMeasuresImageFilter()

template<typename TLabelImage>

itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelOverlapMeasuresImageFilter ( )

protected

Referenced by GetNameOfClass().

~LabelOverlapMeasuresImageFilter()

template<typename TLabelImage>

itk::LabelOverlapMeasuresImageFilter< TLabelImage >::~LabelOverlapMeasuresImageFilter ( )

overrideprotecteddefault

Member Function Documentation

BeforeStreamedGenerateData()

template<typename TLabelImage>

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::BeforeStreamedGenerateData ( )

overrideprotectedvirtual

Called before the input's first requested region is set or updated.

Reimplemented from itk::ImageSink< TLabelImage >.

CreateAnother()

template<typename TLabelImage>

virtual::itk::LightObject::Pointer itk::LabelOverlapMeasuresImageFilter< TLabelImage >::CreateAnother ( ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightObject.

GetDiceCoefficient() [1/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetDiceCoefficient ( ) const

inline

Get the mean overlap (Dice coefficient) over all labels.

Definition at line 149 of file itkLabelOverlapMeasuresImageFilter.h.

References GetMeanOverlap().

GetDiceCoefficient() [2/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetDiceCoefficient ( LabelType label ) const

inline

Get the mean overlap (Dice coefficient) for the specified individual label.

Definition at line 159 of file itkLabelOverlapMeasuresImageFilter.h.

References GetMeanOverlap().

GetFalseDiscoveryRate() [1/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseDiscoveryRate

(

)

const

Get the false discovery rate over all labels.

GetFalseDiscoveryRate() [2/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseDiscoveryRate

(

LabelType

)

const

Get the false discovery rate for the specified individual label.

GetFalseNegativeError() [1/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseNegativeError

(

)

const

Get the false negative error over all labels.

GetFalseNegativeError() [2/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseNegativeError

(

LabelType

)

const

Get the false negative error for the specified individual label.

GetFalsePositiveError() [1/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalsePositiveError

(

)

const

Get the false positive error over all labels.

GetFalsePositiveError() [2/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalsePositiveError

(

LabelType

)

const

Get the false positive error for the specified individual label.

GetJaccardCoefficient() [1/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetJaccardCoefficient ( ) const

inline

Get the union overlap (Jaccard coefficient) over all labels.

Definition at line 129 of file itkLabelOverlapMeasuresImageFilter.h.

References GetUnionOverlap().

GetJaccardCoefficient() [2/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetJaccardCoefficient ( LabelType label ) const

inline

Get the union overlap (Jaccard coefficient) for the specified individual label.

Definition at line 139 of file itkLabelOverlapMeasuresImageFilter.h.

References GetUnionOverlap().

GetLabelSetMeasures()

template<typename TLabelImage>

MapType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetLabelSetMeasures ( )

inline

Get the label set measures.

Definition at line 111 of file itkLabelOverlapMeasuresImageFilter.h.

References m_LabelSetMeasures.

GetMeanOverlap() [1/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap

(

)

const

Get the mean overlap (Dice coefficient) over all labels.

Referenced by GetDiceCoefficient(), and GetDiceCoefficient().

GetMeanOverlap() [2/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap

(

LabelType

)

const

Get the mean overlap (Dice coefficient) for the specified individual label.

GetNameOfClass()

template<typename TLabelImage>

const char * itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetNameOfClass ( ) const

overridevirtual

See also

LightObject::GetNameOfClass()

Reimplemented from itk::ImageSink< TLabelImage >.

References LabelOverlapMeasuresImageFilter().

GetTargetOverlap()

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTargetOverlap

(

LabelType

)

const

Get the target overlap for the specified individual label.

GetTotalOverlap()

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTotalOverlap

(

)

const

Get the total overlap over all labels.

GetUnionOverlap() [1/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap

(

)

const

Get the union overlap (Jaccard coefficient) over all labels.

Referenced by GetJaccardCoefficient(), and GetJaccardCoefficient().

GetUnionOverlap() [2/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap

(

LabelType

)

const

Get the union overlap (Jaccard coefficient) for the specified individual label.

GetVolumeSimilarity() [1/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetVolumeSimilarity

(

)

const

Get the volume similarity over all labels.

GetVolumeSimilarity() [2/2]

template<typename TLabelImage>

RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetVolumeSimilarity

(

LabelType

)

const

Get the volume similarity for the specified individual label.

itkGetInputMacro() [1/2]

template<typename TLabelImage>

itk::LabelOverlapMeasuresImageFilter< TLabelImage >::itkGetInputMacro	(	SourceImage	,
		LabelImageType	)

Set the label image

itkGetInputMacro() [2/2]

template<typename TLabelImage>

itk::LabelOverlapMeasuresImageFilter< TLabelImage >::itkGetInputMacro	(	TargetImage	,
		LabelImageType	)

Set the label image

itkSetInputMacro() [1/2]

template<typename TLabelImage>

itk::LabelOverlapMeasuresImageFilter< TLabelImage >::itkSetInputMacro	(	SourceImage	,
		LabelImageType	)

Set the label image

itkSetInputMacro() [2/2]

template<typename TLabelImage>

itk::LabelOverlapMeasuresImageFilter< TLabelImage >::itkSetInputMacro	(	TargetImage	,
		LabelImageType	)

Set the label image

MergeMap()

template<typename TLabelImage>

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MergeMap ( MapType & m1, MapType & m2 ) const

protected

New()

template<typename TLabelImage>

static Pointer itk::LabelOverlapMeasuresImageFilter< TLabelImage >::New ( )

static

Method for creation through the object factory.

PrintSelf()

template<typename TLabelImage>

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::PrintSelf ( std::ostream & os, Indent indent ) const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageSink< TLabelImage >.

ThreadedStreamedGenerateData()

template<typename TLabelImage>

void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::ThreadedStreamedGenerateData ( const RegionType & )

overrideprotected

Member Data Documentation

ImageDimension

template<typename TLabelImage>

unsigned int itk::LabelOverlapMeasuresImageFilter< TLabelImage >::ImageDimension = TLabelImage::ImageDimension

staticconstexpr

Image related type alias.

Definition at line 99 of file itkLabelOverlapMeasuresImageFilter.h.

m_LabelSetMeasures

template<typename TLabelImage>

MapType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::m_LabelSetMeasures {}

private

Definition at line 217 of file itkLabelOverlapMeasuresImageFilter.h.

Referenced by GetLabelSetMeasures().

m_Mutex

template<typename TLabelImage>

std::mutex itk::LabelOverlapMeasuresImageFilter< TLabelImage >::m_Mutex {}

private

Definition at line 219 of file itkLabelOverlapMeasuresImageFilter.h.

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The documentation for this class was generated from the following file:

• itkLabelOverlapMeasuresImageFilter.h