#include <itkScalarChanAndVeseSparseLevelSetImageFilter.h>
Sparse implementation of the Chan and Vese multiphase level set image filter.
This code was adapted from the paper [22].
This code was taken from the Insight Journal paper:
"Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes" https://doi.org/10.54294/wvwmf8
That is based on the papers:
"Level Set Segmentation: Active Contours without edge" https://doi.org/10.54294/8jk6oy and "Level set segmentation using coupled active surfaces" https://doi.org/10.54294/23ugmy
Definition at line 65 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
Static Public Member Functions | |
static Pointer | New () |
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static Pointer | New () |
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static double | GetGlobalDefaultCoordinateTolerance () |
static double | GetGlobalDefaultDirectionTolerance () |
static void | SetGlobalDefaultCoordinateTolerance (double) |
static void | SetGlobalDefaultDirectionTolerance (double) |
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static bool | GetGlobalWarningDisplay () |
static void | GlobalWarningDisplayOff () |
static void | GlobalWarningDisplayOn () |
static Pointer | New () |
static void | SetGlobalWarningDisplay (bool val) |
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static void | BreakOnError () |
static Pointer | New () |
Static Public Attributes | |
static constexpr unsigned int | ImageDimension = TInputImage::ImageDimension |
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static constexpr unsigned int | ImageDimension = Superclass::ImageDimension |
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static constexpr unsigned int | ImageDimension |
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static constexpr unsigned int | InputImageDimension |
static constexpr unsigned int | InputImageDimension |
static constexpr unsigned int | OutputImageDimension |
static constexpr unsigned int | OutputImageDimension |
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static constexpr unsigned int | InputImageDimension = TInputImage::ImageDimension |
static constexpr unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
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static constexpr unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::ConstPointer = SmartPointer<const Self> |
Definition at line 73 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::FeatureImagePointer = typename FeatureImageType::Pointer |
Definition at line 91 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::FeatureImageType = TFeatureImage |
Definition at line 90 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::FeatureIndexType = typename FeatureImageType::IndexType |
Definition at line 93 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::FeatureIndexValueType = typename FeatureIndexType::IndexValueType |
Definition at line 94 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::FeaturePixelType = typename FeatureImageType::PixelType |
Definition at line 92 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::FeatureRegionType = typename FeatureImageType::RegionType |
Definition at line 95 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
The value type of the time step. This is distinct from PixelType because PixelType may often be a vector value, while the TimeStep is a scalar value.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::FunctionPtr = typename FunctionType::Pointer |
Definition at line 108 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::FunctionType = TFunction |
Definition at line 107 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::IndexType = typename OutputImageType::IndexType |
Definition at line 99 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
Input and output image types.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::OutputImageType = TOutputImage |
Output image type alias
Definition at line 98 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::OutputPixelType = typename OutputImageType::PixelType |
Definition at line 100 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::Pointer = SmartPointer<Self> |
Definition at line 72 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::ROIFilterPointer = typename ROIFilterType::Pointer |
Definition at line 114 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::ROIFilterType = RegionOfInterestImageFilter<FeatureImageType, FeatureImageType> |
Definition at line 113 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::Self = ScalarChanAndVeseSparseLevelSetImageFilter |
Definition at line 69 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::SharedDataPointer = typename SharedDataType::Pointer |
Definition at line 111 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::SharedDataType = TSharedData |
Definition at line 110 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >::Superclass |
Definition at line 70 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
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inlineprotected |
Definition at line 127 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
References m_SharedData, and itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SetNumberOfLayers().
Referenced by GetNameOfClass().
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overrideprotecteddefault |
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virtual |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.
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overridevirtual |
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overrideprotectedvirtual |
Constructs the sparse field layers and initializes their values.
Reimplemented from itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.
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overrideprotectedvirtual |
This method is optionally defined by a subclass and is called immediately prior to each iterative CalculateChange-ApplyUpdate cycle. It can be used to set global variables needed for the next iteration (ie. average gradient magnitude of the image in anisotropic diffusion functions), or otherwise prepare for the next iteration.
Reimplemented from itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.
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static |
Method for creation through the object factory.
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inlinevirtual |
Set/Get the feature image to be used for speed function of the level set equation. Equivalent to calling Set/GetInput(1, ..)
Definition at line 121 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
References itk::ImageToImageFilter< TInputImage, TOutputImage >::SetInput().
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overrideprotectedvirtual |
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staticconstexpr |
Definition at line 81 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
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protected |
Definition at line 135 of file itkScalarChanAndVeseSparseLevelSetImageFilter.h.
Referenced by ScalarChanAndVeseSparseLevelSetImageFilter().