itkFastMarchingImageFilter.h

Go to the documentation of this file.

/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         https://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkFastMarchingImageFilter_h
#define itkFastMarchingImageFilter_h
 
#include "itkImageToImageFilter.h"
#include "itkImageRegionConstIteratorWithIndex.h"
#include "itkLevelSet.h"
#include "itkMath.h"
#include "ITKFastMarchingExport.h"
 
#include <functional>
#include <queue>
 
namespace itk
{
class FastMarchingImageFilterEnums
{
public:
  enum class Label : uint8_t
  {
    FarPoint = 0,
    AlivePoint,
    TrialPoint,
    InitialTrialPoint,
    OutsidePoint
  };
};
// Define how to print enumeration
extern ITKFastMarching_EXPORT std::ostream &
                              operator<<(std::ostream & out, const FastMarchingImageFilterEnums::Label value);
 
template <typename TLevelSet, typename TSpeedImage = Image<float, TLevelSet::ImageDimension>>
class ITK_TEMPLATE_EXPORT FastMarchingImageFilter : public ImageToImageFilter<TSpeedImage, TLevelSet>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(FastMarchingImageFilter);
 
  using Self = FastMarchingImageFilter;
  using Superclass = ImageToImageFilter<TSpeedImage, TLevelSet>;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
 
  itkNewMacro(Self);
 
  itkOverrideGetNameOfClassMacro(FastMarchingImageFilter);
 
  using LevelSetType = LevelSetTypeDefault<TLevelSet>;
  using LevelSetImageType = typename LevelSetType::LevelSetImageType;
  using LevelSetPointer = typename LevelSetType::LevelSetPointer;
  using PixelType = typename LevelSetType::PixelType;
  using NodeType = typename LevelSetType::NodeType;
  using NodeIndexType = typename NodeType::IndexType;
  using NodeContainer = typename LevelSetType::NodeContainer;
  using NodeContainerPointer = typename LevelSetType::NodeContainerPointer;
  using OutputSizeType = typename LevelSetImageType::SizeType;
  using OutputRegionType = typename LevelSetImageType::RegionType;
  using OutputSpacingType = typename LevelSetImageType::SpacingType;
  using OutputDirectionType = typename LevelSetImageType::DirectionType;
  using OutputPointType = typename LevelSetImageType::PointType;
 
  class AxisNodeType : public NodeType
  {
  public:
    AxisNodeType() = default;
    int
    GetAxis() const
    {
      return m_Axis;
    }
    void
    SetAxis(int axis)
    {
      m_Axis = axis;
    }
    AxisNodeType &
    operator=(const NodeType & node)
    {
      this->NodeType::operator=(node);
      return *this;
    }
 
  private:
    int m_Axis{ 0 };
  };
 
  using SpeedImageType = TSpeedImage;
 
  using SpeedImagePointer = typename SpeedImageType::Pointer;
  using SpeedImageConstPointer = typename SpeedImageType::ConstPointer;
 
  static constexpr unsigned int SetDimension = LevelSetType::SetDimension;
  static constexpr unsigned int SpeedImageDimension = SpeedImageType::ImageDimension;
 
  using IndexType = Index<Self::SetDimension>;
 
  using LabelEnum = FastMarchingImageFilterEnums::Label;
#if !defined(ITK_LEGACY_REMOVE)
  static constexpr LabelEnum FarPoint = LabelEnum::FarPoint;
  static constexpr LabelEnum AlivePoint = LabelEnum::AlivePoint;
  static constexpr LabelEnum TrialPoint = LabelEnum::TrialPoint;
  static constexpr LabelEnum InitialTrialPoint = LabelEnum::InitialTrialPoint;
  static constexpr LabelEnum OutsidePoint = LabelEnum::OutsidePoint;
#endif
 
  using LabelImageType = Image<LabelEnum, Self::SetDimension>;
 
  using LabelImagePointer = typename LabelImageType::Pointer;
 
  template <typename TPixel>
  void
  SetBinaryMask(Image<TPixel, SetDimension> * iImage)
  {
    using InternalImageType = Image<TPixel, SetDimension>;
    using InternalRegionIterator = ImageRegionConstIteratorWithIndex<InternalImageType>;
    InternalRegionIterator b_it(iImage, iImage->GetLargestPossibleRegion());
    b_it.GoToBegin();
 
    TPixel                                    zero_value{};
    typename NodeContainer::ElementIdentifier NumberOfPoints = 0;
 
    NodeType node;
    node.SetValue(0.);
 
    while (!b_it.IsAtEnd())
    {
      if (Math::ExactlyEquals(b_it.Get(), zero_value))
      {
        if (NumberOfPoints == 0)
        {
          m_OutsidePoints = NodeContainer::New();
        }
        node.SetIndex(b_it.GetIndex());
        m_OutsidePoints->InsertElement(NumberOfPoints++, node);
      }
      ++b_it;
    }
    this->Modified();
  }
 
  void
  SetOutsidePoints(NodeContainer * points)
  {
    m_OutsidePoints = points;
    this->Modified();
  }
  void
  SetAlivePoints(NodeContainer * points)
  {
    m_AlivePoints = points;
    this->Modified();
  }
  NodeContainerPointer
  GetAlivePoints()
  {
    return m_AlivePoints;
  }
 
  void
  SetTrialPoints(NodeContainer * points)
  {
    m_TrialPoints = points;
    this->Modified();
  }
  NodeContainerPointer
  GetTrialPoints()
  {
    return m_TrialPoints;
  }
 
  LabelImagePointer
  GetLabelImage() const
  {
    return m_LabelImage;
  }
 
  void
  SetSpeedConstant(double value)
  {
    m_SpeedConstant = value;
    m_InverseSpeed = -1.0 * itk::Math::sqr(1.0 / m_SpeedConstant);
    this->Modified();
  }
  itkGetConstReferenceMacro(SpeedConstant, double);
 
  itkSetMacro(NormalizationFactor, double);
  itkGetConstMacro(NormalizationFactor, double);
  itkSetMacro(StoppingValue, double);
 
  itkGetConstReferenceMacro(StoppingValue, double);
 
  itkSetMacro(CollectPoints, bool);
 
  itkGetConstReferenceMacro(CollectPoints, bool);
  itkBooleanMacro(CollectPoints);
  NodeContainerPointer
  GetProcessedPoints() const
  {
    return m_ProcessedPoints;
  }
 
  virtual void
  SetOutputSize(const OutputSizeType & size)
  {
    m_OutputRegion = size;
  }
  virtual OutputSizeType
  GetOutputSize() const
  {
    return m_OutputRegion.GetSize();
  }
  itkSetMacro(OutputRegion, OutputRegionType);
  itkGetConstReferenceMacro(OutputRegion, OutputRegionType);
  itkSetMacro(OutputSpacing, OutputSpacingType);
  itkGetConstReferenceMacro(OutputSpacing, OutputSpacingType);
  itkSetMacro(OutputDirection, OutputDirectionType);
  itkGetConstReferenceMacro(OutputDirection, OutputDirectionType);
  itkSetMacro(OutputOrigin, OutputPointType);
  itkGetConstReferenceMacro(OutputOrigin, OutputPointType);
  itkSetMacro(OverrideOutputInformation, bool);
  itkGetConstReferenceMacro(OverrideOutputInformation, bool);
  itkBooleanMacro(OverrideOutputInformation);
#ifdef ITK_USE_CONCEPT_CHECKING
  // Begin concept checking
  itkConceptMacro(SameDimensionCheck, (Concept::SameDimension<SetDimension, SpeedImageDimension>));
  itkConceptMacro(SpeedConvertibleToDoubleCheck, (Concept::Convertible<typename TSpeedImage::PixelType, double>));
  itkConceptMacro(DoubleConvertibleToLevelSetCheck, (Concept::Convertible<double, PixelType>));
  itkConceptMacro(LevelSetOStreamWritableCheck, (Concept::OStreamWritable<PixelType>));
  // End concept checking
#endif
 
protected:
  FastMarchingImageFilter();
  ~FastMarchingImageFilter() override = default;
  void
  PrintSelf(std::ostream & os, Indent indent) const override;
 
  virtual void
  Initialize(LevelSetImageType *);
 
  virtual void
  UpdateNeighbors(const IndexType & index, const SpeedImageType *, LevelSetImageType *);
 
  virtual double
  UpdateValue(const IndexType & index, const SpeedImageType *, LevelSetImageType *);
 
  const AxisNodeType &
  GetNodeUsedInCalculation(unsigned int idx) const
  {
    return m_NodesUsed[idx];
  }
 
  void
  GenerateData() override;
 
  void
  GenerateOutputInformation() override;
 
  void
  EnlargeOutputRequestedRegion(DataObject * output) override;
 
  itkGetConstReferenceMacro(LargeValue, PixelType);
 
  OutputRegionType m_BufferedRegion{};
  using LevelSetIndexType = typename LevelSetImageType::IndexType;
  LevelSetIndexType m_StartIndex{};
  LevelSetIndexType m_LastIndex{};
 
  itkGetConstReferenceMacro(StartIndex, LevelSetIndexType);
  itkGetConstReferenceMacro(LastIndex, LevelSetIndexType);
 
private:
  NodeContainerPointer m_AlivePoints{};
  NodeContainerPointer m_TrialPoints{};
  NodeContainerPointer m_OutsidePoints{};
 
  LabelImagePointer m_LabelImage{};
 
  double m_SpeedConstant{};
  double m_InverseSpeed{};
  double m_StoppingValue{};
 
  bool                 m_CollectPoints{};
  NodeContainerPointer m_ProcessedPoints{};
 
  OutputRegionType    m_OutputRegion{};
  OutputPointType     m_OutputOrigin{};
  OutputSpacingType   m_OutputSpacing{};
  OutputDirectionType m_OutputDirection{};
  bool                m_OverrideOutputInformation{};
 
  typename LevelSetImageType::PixelType m_LargeValue{};
  AxisNodeType                          m_NodesUsed[SetDimension]{};
 
  using HeapContainer = std::vector<AxisNodeType>;
  using NodeComparer = std::greater<AxisNodeType>;
  using HeapType = std::priority_queue<AxisNodeType, HeapContainer, NodeComparer>;
 
  HeapType m_TrialHeap{};
 
  double m_NormalizationFactor{};
};
} // namespace itk
 
#ifndef ITK_MANUAL_INSTANTIATION
#  include "itkFastMarchingImageFilter.hxx"
#endif
 
#endif