#include <itkLabelShapeOpeningImageFilter.h>
remove the objects according to the value of their shape attribute
LabelShapeOpeningImageFilter removes the objects in a labeled image with an attribute value smaller or greater than a threshold called Lambda. The attributes are the ones of the ShapeLabelObject.
This implementation was taken from the Insight Journal paper: https://doi.org/10.54294/q6auw4
Definition at line 47 of file itkLabelShapeOpeningImageFilter.h.
Public Member Functions | |
virtual::itk::LightObject::Pointer | CreateAnother () const |
const char * | GetNameOfClass () const override |
virtual void | SetBackgroundValue (OutputImagePixelType _arg) |
virtual OutputImagePixelType | GetBackgroundValue () const |
virtual double | GetLambda () const |
virtual void | SetLambda (double _arg) |
virtual bool | GetReverseOrdering () const |
virtual void | SetReverseOrdering (bool _arg) |
virtual void | ReverseOrderingOn () |
virtual void | ReverseOrderingOff () |
virtual AttributeType | GetAttribute () const |
virtual void | SetAttribute (AttributeType _arg) |
void | SetAttribute (const std::string &s) |
![]() | |
const InputImageType * | GetInput () const |
const InputImageType * | GetInput () const |
const InputImageType * | GetInput (unsigned int idx) const |
const InputImageType * | GetInput (unsigned int idx) const |
void | PopBackInput () override |
void | PopBackInput () override |
void | PopFrontInput () override |
void | PopFrontInput () override |
virtual void | PushBackInput (const InputImageType *input) |
virtual void | PushBackInput (const InputImageType *input) |
virtual void | PushFrontInput (const InputImageType *input) |
virtual void | PushFrontInput (const InputImageType *input) |
virtual void | SetInput (const InputImageType *input) |
virtual void | SetInput (const InputImageType *input) |
virtual void | SetInput (unsigned int, const TInputImage *image) |
virtual void | SetInput (unsigned int, const TInputImage *image) |
virtual void | SetCoordinateTolerance (double _arg) |
virtual double | GetCoordinateTolerance () const |
virtual void | SetCoordinateTolerance (double _arg) |
virtual double | GetCoordinateTolerance () const |
virtual void | SetDirectionTolerance (double _arg) |
virtual double | GetDirectionTolerance () const |
virtual void | SetDirectionTolerance (double _arg) |
virtual double | GetDirectionTolerance () const |
![]() | |
OutputImageType * | GetOutput (unsigned int idx) |
OutputImageType * | GetOutput () |
const OutputImageType * | GetOutput () const |
virtual void | GraftOutput (DataObject *graft) |
virtual void | GraftOutput (const DataObjectIdentifierType &key, DataObject *graft) |
virtual void | GraftNthOutput (unsigned int idx, DataObject *graft) |
ProcessObject::DataObjectPointer | MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override |
ProcessObject::DataObjectPointer | MakeOutput (const ProcessObject::DataObjectIdentifierType &) override |
![]() | |
virtual void | AbortGenerateDataOff () |
virtual void | AbortGenerateDataOn () |
virtual const bool & | GetAbortGenerateData () const |
DataObjectPointerArray | GetIndexedInputs () |
DataObjectPointerArray | GetIndexedOutputs () |
NameArray | GetInputNames () const |
DataObjectPointerArray | GetInputs () |
MultiThreaderType * | GetMultiThreader () const |
const char * | GetNameOfClass () const override |
DataObjectPointerArraySizeType | GetNumberOfIndexedInputs () const |
DataObjectPointerArraySizeType | GetNumberOfIndexedOutputs () const |
DataObjectPointerArraySizeType | GetNumberOfInputs () const |
DataObjectPointerArraySizeType | GetNumberOfOutputs () const |
virtual DataObjectPointerArraySizeType | GetNumberOfValidRequiredInputs () const |
NameArray | GetOutputNames () const |
DataObjectPointerArray | GetOutputs () |
virtual float | GetProgress () const |
NameArray | GetRequiredInputNames () const |
bool | HasInput (const DataObjectIdentifierType &key) const |
bool | HasOutput (const DataObjectIdentifierType &key) const |
void | IncrementProgress (float increment) |
virtual void | PrepareOutputs () |
virtual void | PropagateRequestedRegion (DataObject *output) |
virtual void | ResetPipeline () |
virtual void | SetAbortGenerateData (bool _arg) |
void | SetMultiThreader (MultiThreaderType *threader) |
virtual void | Update () |
virtual void | UpdateLargestPossibleRegion () |
virtual void | UpdateOutputData (DataObject *output) |
virtual void | UpdateOutputInformation () |
void | UpdateProgress (float progress) |
virtual void | SetReleaseDataFlag (bool val) |
virtual bool | GetReleaseDataFlag () const |
void | ReleaseDataFlagOn () |
void | ReleaseDataFlagOff () |
virtual void | SetReleaseDataBeforeUpdateFlag (bool _arg) |
virtual const bool & | GetReleaseDataBeforeUpdateFlag () const |
virtual void | ReleaseDataBeforeUpdateFlagOn () |
virtual void | ReleaseDataBeforeUpdateFlagOff () |
virtual void | SetNumberOfWorkUnits (ThreadIdType _arg) |
virtual const ThreadIdType & | GetNumberOfWorkUnits () const |
![]() | |
unsigned long | AddObserver (const EventObject &event, Command *cmd) const |
unsigned long | AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const |
LightObject::Pointer | CreateAnother () const override |
virtual void | DebugOff () const |
virtual void | DebugOn () const |
Command * | GetCommand (unsigned long tag) |
bool | GetDebug () const |
MetaDataDictionary & | GetMetaDataDictionary () |
const MetaDataDictionary & | GetMetaDataDictionary () const |
virtual ModifiedTimeType | GetMTime () const |
virtual const TimeStamp & | GetTimeStamp () const |
bool | HasObserver (const EventObject &event) const |
void | InvokeEvent (const EventObject &) |
void | InvokeEvent (const EventObject &) const |
virtual void | Modified () const |
void | Register () const override |
void | RemoveAllObservers () |
void | RemoveObserver (unsigned long tag) const |
void | SetDebug (bool debugFlag) const |
void | SetReferenceCount (int) override |
void | UnRegister () const noexcept override |
void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
void | SetMetaDataDictionary (MetaDataDictionary &&rrhs) |
virtual void | SetObjectName (std::string _arg) |
virtual const std::string & | GetObjectName () const |
![]() | |
Pointer | Clone () const |
virtual void | Delete () |
virtual int | GetReferenceCount () const |
void | Print (std::ostream &os, Indent indent=0) const |
Static Public Member Functions | |
static Pointer | New () |
![]() | |
static double | GetGlobalDefaultCoordinateTolerance () |
static double | GetGlobalDefaultCoordinateTolerance () |
static double | GetGlobalDefaultDirectionTolerance () |
static double | GetGlobalDefaultDirectionTolerance () |
static void | SetGlobalDefaultCoordinateTolerance (double) |
static void | SetGlobalDefaultCoordinateTolerance (double) |
static void | SetGlobalDefaultDirectionTolerance (double) |
static void | SetGlobalDefaultDirectionTolerance (double) |
![]() | |
static bool | GetGlobalWarningDisplay () |
static void | GlobalWarningDisplayOff () |
static void | GlobalWarningDisplayOn () |
static Pointer | New () |
static void | SetGlobalWarningDisplay (bool val) |
![]() | |
static void | BreakOnError () |
static Pointer | New () |
Static Public Attributes | |
static constexpr unsigned int | ImageDimension = TInputImage::ImageDimension |
static constexpr unsigned int | InputImageDimension = TInputImage::ImageDimension |
static constexpr unsigned int | OutputImageDimension = TInputImage::ImageDimension |
![]() | |
static constexpr unsigned int | InputImageDimension |
static constexpr unsigned int | InputImageDimension |
static constexpr unsigned int | OutputImageDimension |
static constexpr unsigned int | OutputImageDimension |
![]() | |
static constexpr unsigned int | OutputImageDimension |
Private Attributes | |
AttributeType | m_Attribute {} |
OutputImagePixelType | m_BackgroundValue {} |
double | m_Lambda {} |
bool | m_ReverseOrdering {} |
Additional Inherited Members | |
![]() | |
using | InputToOutputRegionCopierType |
using | OutputToInputRegionCopierType |
![]() | |
static const ImageRegionSplitterBase * | GetGlobalDefaultSplitter () |
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION | ThreaderCallback (void *arg) |
![]() | |
template<typename TSourceObject> | |
static void | MakeRequiredOutputs (TSourceObject &sourceObject, const DataObjectPointerArraySizeType numberOfRequiredOutputs) |
static constexpr float | progressFixedToFloat (uint32_t fixed) |
static uint32_t | progressFloatToFixed (float f) |
![]() | |
bool | m_DynamicMultiThreading |
![]() | |
TimeStamp | m_OutputInformationMTime {} |
bool | m_Updating {} |
![]() | |
std::atomic< int > | m_ReferenceCount {} |
using itk::LabelShapeOpeningImageFilter< TInputImage >::AttributeType = typename LabelObjectType::AttributeType |
Definition at line 80 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::BinarizerType = LabelMapToLabelImageFilter<LabelMapType, OutputImageType> |
Definition at line 82 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::ConstPointer = SmartPointer<const Self> |
Definition at line 56 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::InputImageConstPointer = typename InputImageType::ConstPointer |
Definition at line 62 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::InputImagePixelType = typename InputImageType::PixelType |
Definition at line 64 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::InputImagePointer = typename InputImageType::Pointer |
Definition at line 61 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::InputImageRegionType = typename InputImageType::RegionType |
Definition at line 63 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::InputImageType = TInputImage |
Some convenient type alias.
Definition at line 59 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::LabelizerType = LabelImageToLabelMapFilter<InputImageType, LabelMapType> |
Definition at line 77 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::LabelMapType = LabelMap<LabelObjectType> |
Definition at line 76 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::LabelObjectType = ShapeLabelObject<InputImagePixelType, Self::ImageDimension> |
Definition at line 75 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::LabelObjectValuatorType = ShapeLabelMapFilter<LabelMapType, ShapeLabelFilterOutput> |
Definition at line 79 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::OpeningType = ShapeOpeningLabelMapFilter<LabelMapType> |
Definition at line 81 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::OutputImageConstPointer = typename OutputImageType::ConstPointer |
Definition at line 66 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::OutputImagePixelType = typename OutputImageType::PixelType |
Definition at line 68 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::OutputImagePointer = typename OutputImageType::Pointer |
Definition at line 65 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::OutputImageRegionType = typename OutputImageType::RegionType |
Definition at line 67 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::OutputImageType = TInputImage |
Definition at line 60 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::Pointer = SmartPointer<Self> |
Definition at line 55 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::Self = LabelShapeOpeningImageFilter |
Standard class type aliases.
Definition at line 53 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::ShapeLabelFilterOutput = Image<typename OutputImageType::PixelType, Self::OutputImageDimension> |
Definition at line 78 of file itkLabelShapeOpeningImageFilter.h.
using itk::LabelShapeOpeningImageFilter< TInputImage >::Superclass = ImageToImageFilter<TInputImage, TInputImage> |
Definition at line 54 of file itkLabelShapeOpeningImageFilter.h.
|
protected |
Referenced by GetNameOfClass().
|
overrideprotecteddefault |
|
virtual |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::LightObject.
|
overrideprotectedvirtual |
LabelShapeOpeningImageFilter will produce the entire output.
Reimplemented from itk::ProcessObject.
|
overrideprotectedvirtual |
Single-threaded version of GenerateData. This filter delegates to GrayscaleGeodesicErodeImageFilter.
Reimplemented from itk::ImageSource< TInputImage >.
|
overrideprotectedvirtual |
LabelShapeOpeningImageFilter needs the entire input be available. Thus, it needs to provide an implementation of GenerateInputRequestedRegion().
Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.
|
virtual |
Set/Get the attribute to use to select the object to remove. The default is "Size".
|
virtual |
Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::NonpositiveMin().
|
virtual |
Set/Get the threshold used to keep or remove the objects.
|
overridevirtual |
Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.
References LabelShapeOpeningImageFilter().
|
virtual |
Set/Get the ordering of the objects. By default, the objects with an attribute value smaller than Lamba are removed. Turning ReverseOrdering to true make this filter remove the object with an attribute value greater than Lambda instead.
|
static |
Standard New method.
|
overrideprotectedvirtual |
Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::ImageToImageFilter< TInputImage, TInputImage >.
|
virtual |
Set/Get the ordering of the objects. By default, the objects with an attribute value smaller than Lamba are removed. Turning ReverseOrdering to true make this filter remove the object with an attribute value greater than Lambda instead.
|
virtual |
Set/Get the ordering of the objects. By default, the objects with an attribute value smaller than Lamba are removed. Turning ReverseOrdering to true make this filter remove the object with an attribute value greater than Lambda instead.
|
virtual |
Set/Get the attribute to use to select the object to remove. The default is "Size".
Referenced by SetAttribute().
|
inline |
Set/Get the attribute to use to select the object to remove. The default is "Size".
Definition at line 127 of file itkLabelShapeOpeningImageFilter.h.
References itk::ShapeLabelObject< InputImagePixelType, Self::ImageDimension >::GetAttributeFromName(), and SetAttribute().
|
virtual |
Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::NonpositiveMin().
|
virtual |
Set/Get the threshold used to keep or remove the objects.
|
virtual |
Set/Get the ordering of the objects. By default, the objects with an attribute value smaller than Lamba are removed. Turning ReverseOrdering to true make this filter remove the object with an attribute value greater than Lambda instead.
|
staticconstexpr |
Definition at line 73 of file itkLabelShapeOpeningImageFilter.h.
|
staticconstexpr |
ImageDimension constants
Definition at line 71 of file itkLabelShapeOpeningImageFilter.h.
|
private |
Definition at line 158 of file itkLabelShapeOpeningImageFilter.h.
|
private |
Definition at line 155 of file itkLabelShapeOpeningImageFilter.h.
|
private |
Definition at line 156 of file itkLabelShapeOpeningImageFilter.h.
|
private |
Definition at line 157 of file itkLabelShapeOpeningImageFilter.h.
|
staticconstexpr |
Definition at line 72 of file itkLabelShapeOpeningImageFilter.h.