#include <itkScalarChanAndVeseDenseLevelSetImageFilter.h>
Dense implementation of the Chan and Vese multiphase level set image filter.
This code was adapted from the paper [22].
This code was taken from the Insight Journal paper:
"Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes" https://doi.org/10.54294/wvwmf8
That is based on the papers:
"Level Set Segmentation: Active Contours without edge" https://doi.org/10.54294/8jk6oy and "Level set segmentation using coupled active surfaces" https://doi.org/10.54294/23ugmy
Definition at line 56 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
Static Public Member Functions | |
static Pointer | New () |
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static double | GetGlobalDefaultCoordinateTolerance () |
static double | GetGlobalDefaultDirectionTolerance () |
static void | SetGlobalDefaultCoordinateTolerance (double) |
static void | SetGlobalDefaultDirectionTolerance (double) |
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static bool | GetGlobalWarningDisplay () |
static void | GlobalWarningDisplayOff () |
static void | GlobalWarningDisplayOn () |
static Pointer | New () |
static void | SetGlobalWarningDisplay (bool val) |
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static void | BreakOnError () |
static Pointer | New () |
Static Public Attributes | |
static constexpr unsigned int | ImageDimension = TInputImage::ImageDimension |
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static constexpr unsigned int | ImageDimension = Superclass::ImageDimension |
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static constexpr unsigned int | ImageDimension |
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static constexpr unsigned int | InputImageDimension |
static constexpr unsigned int | InputImageDimension |
static constexpr unsigned int | OutputImageDimension |
static constexpr unsigned int | OutputImageDimension |
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static constexpr unsigned int | InputImageDimension = TInputImage::ImageDimension |
static constexpr unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
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static constexpr unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
Additional Inherited Members | |
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using | InputToOutputRegionCopierType |
using | OutputToInputRegionCopierType |
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static const ImageRegionSplitterBase * | GetGlobalDefaultSplitter () |
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION | ThreaderCallback (void *arg) |
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template<typename TSourceObject> | |
static void | MakeRequiredOutputs (TSourceObject &sourceObject, const DataObjectPointerArraySizeType numberOfRequiredOutputs) |
static constexpr float | progressFixedToFloat (uint32_t fixed) |
static uint32_t | progressFloatToFixed (float f) |
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::ConstPointer = SmartPointer<const Self> |
Definition at line 65 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::FeatureImagePointer = typename FeatureImageType::Pointer |
Definition at line 83 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::FeatureImageType = TFeatureImage |
Definition at line 82 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::FeatureIndexType = typename FeatureImageType::IndexType |
Definition at line 85 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::FeatureIndexValueType = typename FeatureIndexType::IndexValueType |
Definition at line 86 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::FeaturePixelType = typename FeatureImageType::PixelType |
Definition at line 84 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::FeatureRegionType = typename FeatureImageType::RegionType |
Definition at line 87 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FiniteDifferenceFunctionType |
The value type of the time step. This is distinct from PixelType because PixelType may often be a vector value, while the TimeStep is a scalar value.
Definition at line 156 of file itkMultiphaseFiniteDifferenceImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::FunctionPointer = typename FunctionType::Pointer |
Definition at line 98 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::FunctionType = TFunction |
Definition at line 97 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::IndexType = typename OutputImageType::IndexType |
Definition at line 91 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputImagePointer |
Definition at line 120 of file itkMultiphaseFiniteDifferenceImageFilter.h.
using itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputImageType |
Input and output image types.
Definition at line 119 of file itkMultiphaseFiniteDifferenceImageFilter.h.
using itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputPointType |
Definition at line 127 of file itkMultiphaseFiniteDifferenceImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::InputSpacingType = typename InputImageType::SpacingType |
Definition at line 80 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::OutputImageType = TOutputImage |
Output image type alias
Definition at line 90 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::OutputPixelType = typename OutputImageType::PixelType |
Definition at line 92 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::Pointer = SmartPointer<Self> |
Definition at line 64 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::ROIFilterPointer = typename ROIFilterType::Pointer |
Definition at line 104 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::ROIFilterType = RegionOfInterestImageFilter<FeatureImageType, FeatureImageType> |
Definition at line 103 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::Self = ScalarChanAndVeseDenseLevelSetImageFilter |
Definition at line 62 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::SharedDataPointer = typename SharedDataType::Pointer |
Definition at line 101 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::SharedDataType = TSharedData |
Definition at line 100 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >::Superclass = MultiphaseDenseFiniteDifferenceImageFilter<TInputImage, TFeatureImage, TOutputImage, TFunction> |
Definition at line 63 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
using itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::TimeStepType |
Definition at line 161 of file itkMultiphaseFiniteDifferenceImageFilter.h.
using itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ValueType |
Definition at line 129 of file itkMultiphaseDenseFiniteDifferenceImageFilter.h.
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inlineprotected |
Definition at line 117 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
References m_SharedData.
Referenced by GetNameOfClass().
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overrideprotecteddefault |
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virtual |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::Object.
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overridevirtual |
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overrideprotectedvirtual |
This method is optionally defined by a subclass and is called before the loop of iterations of calculate_change & update. It does the global initialization, i.e. in the SparseFieldLevelSetImageFilter, initialize the list of layers.
Reimplemented from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >.
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overrideprotectedvirtual |
This method is optionally defined by a subclass and is called immediately prior to each iterative CalculateChange-ApplyUpdate cycle. It can be used to set global variables needed for the next iteration (ie. average gradient magnitude of the image in anisotropic diffusion functions), or otherwise prepare for the next iteration.
Reimplemented from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >.
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static |
Method for creation through the object factory.
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inlinevirtual |
Set/Get the feature image to be used for speed function of the level set equation. Equivalent to calling Set/GetInput(1, ..)
Definition at line 111 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
References itk::ImageToImageFilter< TInputImage, TOutputImage >::SetInput().
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staticconstexpr |
Definition at line 73 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
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protected |
Definition at line 121 of file itkScalarChanAndVeseDenseLevelSetImageFilter.h.
Referenced by ScalarChanAndVeseDenseLevelSetImageFilter().