#include <itkSyNImageRegistrationMethod.h>

Detailed Description

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
class itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >

Interface method for the performing greedy SyN image registration.

For greedy SyN we use m_Transform to map the time-parameterized middle image to the fixed image (and vice versa using m_Transform->GetInverseDisplacementField() ). We employ another ivar, m_InverseTransform, to map the time-parameterized middle image to the moving image.

Output: The output is the updated transform which has been added to the composite transform.

This implementation is based on the source code in Advanced Normalization Tools (ANTs) [6].

The original paper discussing the method is [5].

The method evolved since that time with crucial contributions from Gang Song and Nick Tustison. Though similar in spirit, this implementation is not identical.

Todo: Need to allow the fixed image to have a composite transform.

Author: Nick Tustison; Brian Avants

Definition at line 61 of file itkSyNImageRegistrationMethod.h.

Inheritance diagram for itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >:

Collaboration diagram for itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >:

Public Types
using	ConstPointer = SmartPointer<const Self>

using	DecoratedOutputTransformPointer = typename DecoratedOutputTransformType::Pointer

using	DerivativeType = typename OutputTransformType::DerivativeType

using	DerivativeValueType = typename DerivativeType::ValueType

using	DisplacementFieldPointer = typename DisplacementFieldType::Pointer

using	DisplacementFieldTransformPointer = typename DisplacementFieldTransformType::Pointer

using	DisplacementFieldTransformType = DisplacementFieldTransform<RealType, ImageDimension>

using	DisplacementFieldType = typename OutputTransformType::DisplacementFieldType

using	DisplacementVectorType = typename DisplacementFieldType::PixelType

using	FixedImagePointer = typename FixedImageType::Pointer

using	FixedImageType = TFixedImage

using	FixedMaskImageType = typename ImageMaskSpatialObjectType::ImageType

using	ImageMaskSpatialObjectType = ImageMaskSpatialObject<ImageDimension>

using	ImageMetricPointer = typename ImageMetricType::Pointer

using	MeasureType = typename ImageMetricType::MeasureType

using	MetricPointer = typename MetricType::Pointer

using	MovingImagePointer = typename MovingImageType::Pointer

using	MovingImageType = TMovingImage

using	MovingMaskImageType = typename ImageMaskSpatialObjectType::ImageType

using	NumberOfIterationsArrayType = Array<SizeValueType>

using	OutputTransformPointer = typename OutputTransformType::Pointer

using	OutputTransformType = TOutputTransform

using	Pointer = SmartPointer<Self>

using	PointSetPointer = typename PointSetType::Pointer

using	RealType = typename OutputTransformType::ScalarType

using	Self = SyNImageRegistrationMethod

using	Superclass = ImageRegistrationMethodv4<TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet>

using	TransformBaseType = typename CompositeTransformType::TransformType

using	VirtualImageType = typename Superclass::VirtualImageType

Public Types inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >
using	CompositeTransformPointer = typename CompositeTransformType::Pointer

using	CompositeTransformType = CompositeTransform<RealType, ImageDimension>

using	ConstPointer = SmartPointer<const Self>

using	DataObjectPointerArraySizeType = ProcessObject::DataObjectPointerArraySizeType

using	DecoratedInitialTransformPointer = typename DecoratedInitialTransformType::Pointer

using	DecoratedInitialTransformType = DataObjectDecorator<InitialTransformType>

using	DecoratedOutputTransformPointer = typename DecoratedOutputTransformType::Pointer

using	DecoratedOutputTransformType = DataObjectDecorator<OutputTransformType>

using	DerivativeType = typename OutputTransformType::DerivativeType

using	DerivativeValueType = typename DerivativeType::ValueType

using	FixedImageConstPointer = typename FixedImageType::ConstPointer

using	FixedImageMaskConstPointer = typename FixedImageMaskType::ConstPointer

using	FixedImageMasksContainerType = std::vector<FixedImageMaskConstPointer>

using	FixedImageMaskType = typename ImageMetricType::FixedImageMaskType

using	FixedImagePointer = typename FixedImageType::Pointer

using	FixedImagesContainerType = std::vector<FixedImageConstPointer>

using	FixedImageType = TFixedImage

using	ImageMetricType = ImageToImageMetricv4<FixedImageType, MovingImageType, VirtualImageType, RealType>

using	InitialTransformPointer = typename InitialTransformType::Pointer

using	InitialTransformType = Transform<RealType, ImageDimension, ImageDimension>

using	MetricPointer = typename MetricType::Pointer

using	MetricSamplePointSetType = typename ImageMetricType::FixedSampledPointSetType

using	MetricSamplingPercentageArrayType = Array<RealType>

using	MetricSamplingStrategyEnum = ImageRegistrationMethodv4Enums::MetricSamplingStrategy

using	MetricType = ObjectToObjectMetricBaseTemplate<RealType>

using	MovingImageConstPointer = typename MovingImageType::ConstPointer

using	MovingImageMaskConstPointer = typename MovingImageMaskType::ConstPointer

using	MovingImageMasksContainerType = std::vector<MovingImageMaskConstPointer>

using	MovingImageMaskType = typename ImageMetricType::MovingImageMaskType

using	MovingImagePointer = typename MovingImageType::Pointer

using	MovingImagesContainerType = std::vector<MovingImageConstPointer>

using	MovingImageType = TMovingImage

using	MultiMetricType = ObjectToObjectMultiMetricv4<ImageDimension, ImageDimension, VirtualImageType, RealType>

using	OptimizerPointer = typename OptimizerType::Pointer

using	OptimizerType = ObjectToObjectOptimizerBaseTemplate<RealType>

using	OptimizerWeightsType = typename OptimizerType::ScalesType

using	OutputTransformPointer = typename OutputTransformType::Pointer

using	OutputTransformType = TOutputTransform

using	Pointer = SmartPointer<Self>

using	PointSetConstPointer = typename PointSetType::ConstPointer

using	PointSetMetricType = PointSetToPointSetMetricWithIndexv4<PointSetType, PointSetType, RealType>

using	PointSetsContainerType = std::vector<PointSetConstPointer>

using	PointSetType = TPointSet

using	RealType = typename OutputTransformType::ScalarType

using	Self = ImageRegistrationMethodv4

using	ShrinkFactorsArrayType = Array<SizeValueType>

using	ShrinkFactorsPerDimensionContainerType = typename ShrinkFilterType::ShrinkFactorsType

using	ShrinkFilterType = ShrinkImageFilter<FixedImageType, VirtualImageType>

using	SmoothingSigmasArrayType = Array<RealType>

using	Superclass = ProcessObject

using	TransformParametersAdaptorPointer = typename TransformParametersAdaptorType::Pointer

using	TransformParametersAdaptorsContainerType = std::vector<TransformParametersAdaptorPointer>

using	TransformParametersAdaptorType = TransformParametersAdaptorBase<InitialTransformType>

using	VectorType = Vector<RealType, ImageDimension>

using	VirtualImageBaseConstPointer = typename VirtualImageBaseType::ConstPointer

using	VirtualImageBaseType = ImageBase<ImageDimension>

using	VirtualImagePointer = typename VirtualImageType::Pointer

using	VirtualImageType = TVirtualImage

Public Types inherited from itk::ProcessObject
using	ConstPointer = SmartPointer<const Self>

using	DataObjectIdentifierType = DataObject::DataObjectIdentifierType

using	DataObjectPointer = DataObject::Pointer

using	DataObjectPointerArray = std::vector<DataObjectPointer>

using	DataObjectPointerArraySizeType = DataObjectPointerArray::size_type

using	NameArray = std::vector<DataObjectIdentifierType>

using	Pointer = SmartPointer<Self>

using	Self = ProcessObject

using	Superclass = Object

Public Types inherited from itk::Object
using	ConstPointer = SmartPointer<const Self>

using	Pointer = SmartPointer<Self>

using	Self = Object

using	Superclass = LightObject

Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer<const Self>

using	Pointer = SmartPointer<Self>

using	Self = LightObject

Public Member Functions
virtual::itk::LightObject::Pointer	CreateAnother () const

virtual const char *	GetNameOfClass () const


virtual void	SetLearningRate (RealType _arg)

virtual RealType	GetLearningRate () const


virtual void	SetNumberOfIterationsPerLevel (NumberOfIterationsArrayType _arg)

virtual NumberOfIterationsArrayType	GetNumberOfIterationsPerLevel () const


virtual void	SetConvergenceThreshold (RealType _arg)

virtual RealType	GetConvergenceThreshold () const


virtual void	SetConvergenceWindowSize (unsigned int _arg)

virtual unsigned int	GetConvergenceWindowSize () const


virtual void	SetDownsampleImagesForMetricDerivatives (bool _arg)

virtual bool	GetDownsampleImagesForMetricDerivatives () const


virtual void	SetAverageMidPointGradients (bool _arg)

virtual bool	GetAverageMidPointGradients () const


virtual void	SetGaussianSmoothingVarianceForTheUpdateField (RealType _arg)

virtual const RealType &	GetGaussianSmoothingVarianceForTheUpdateField () const


virtual void	SetGaussianSmoothingVarianceForTheTotalField (RealType _arg)

virtual const RealType &	GetGaussianSmoothingVarianceForTheTotalField () const


virtual OutputTransformType *	GetModifiableFixedToMiddleTransform ()

virtual const OutputTransformType *	GetFixedToMiddleTransform () const

virtual OutputTransformType *	GetModifiableMovingToMiddleTransform ()

virtual const OutputTransformType *	GetMovingToMiddleTransform () const


virtual void	SetFixedToMiddleTransform (OutputTransformType *_arg)

virtual void	SetMovingToMiddleTransform (OutputTransformType *_arg)

Public Member Functions inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >
virtual const RealType &	GetCurrentConvergenceValue () const

virtual const SizeValueType &	GetCurrentIteration () const

virtual SizeValueType	GetCurrentLevel () const

virtual const RealType &	GetCurrentMetricValue () const

virtual const InitialTransformType *	GetFixedInitialTransform () const

virtual const DataObjectDecorator< InitialTransformType > *	GetFixedInitialTransformInput () const

virtual const DataObjectDecorator< InitialTransformType > *	GetFixedInitialTransformInput () const

virtual const InitialTransformType *	GetInitialTransform () const

virtual const DataObjectDecorator< InitialTransformType > *	GetInitialTransformInput () const

virtual const DataObjectDecorator< InitialTransformType > *	GetInitialTransformInput () const

virtual const DataObjectDecorator< InitialTransformType > *	GetInputnumber () const

virtual const DataObjectDecorator< InitialTransformType > *	GetInputnumber () const

virtual const DataObjectDecorator< InitialTransformType > *	GetInputnumber () const

virtual const bool &	GetIsConverged () const

virtual OutputTransformType *	GetModifiableTransform ()

virtual const InitialTransformType *	GetMovingInitialTransform () const

virtual const DataObjectDecorator< InitialTransformType > *	GetMovingInitialTransformInput () const

virtual const DataObjectDecorator< InitialTransformType > *	GetMovingInitialTransformInput () const

ShrinkFactorsPerDimensionContainerType	GetShrinkFactorsPerDimension (const unsigned int level) const

virtual const OutputTransformType *	GetTransform () const

virtual DecoratedOutputTransformType *	GetTransformOutput ()

virtual const DecoratedOutputTransformType *	GetTransformOutput () const

void	InitializeCenterOfLinearOutputTransform ()

virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)

DataObjectPointer	MakeOutput (DataObjectPointerArraySizeType) override

virtual void	SetFixedInitialTransform (const InitialTransformType *_arg)

virtual void	SetFixedInitialTransformInput (const DataObjectDecorator< InitialTransformType > *_arg)

virtual void	SetInitialTransform (const InitialTransformType *_arg)

virtual void	SetInitialTransformInput (const DataObjectDecorator< InitialTransformType > *_arg)

virtual void	SetInputnumber (const DataObjectDecorator< InitialTransformType > *_arg)

virtual void	SetInputnumber (const DataObjectDecorator< InitialTransformType > *_arg)

virtual void	SetInputnumber (const DataObjectDecorator< InitialTransformType > *_arg)

void	SetMetricSamplingPercentage (const RealType)

virtual void	SetMovingInitialTransform (const InitialTransformType *_arg)

virtual void	SetMovingInitialTransformInput (const DataObjectDecorator< InitialTransformType > *_arg)

void	SetShrinkFactorsPerDimension (unsigned int level, ShrinkFactorsPerDimensionContainerType factors)

void	SetShrinkFactorsPerLevel (ShrinkFactorsArrayType factors)

virtual void	SetFixedImage (const FixedImageType *image)

virtual const FixedImageType *	GetFixedImage () const

virtual void	SetFixedImage (SizeValueType, const FixedImageType *)

virtual const FixedImageType *	GetFixedImage (SizeValueType) const

virtual void	SetMovingImage (const MovingImageType *image)

virtual const MovingImageType *	GetMovingImage () const

virtual void	SetMovingImage (SizeValueType, const MovingImageType *)

virtual const MovingImageType *	GetMovingImage (SizeValueType) const

virtual void	SetFixedPointSet (const PointSetType *pointSet)

virtual const PointSetType *	GetFixedPointSet () const

virtual void	SetFixedPointSet (SizeValueType, const PointSetType *)

virtual const PointSetType *	GetFixedPointSet (SizeValueType) const

virtual void	SetMovingPointSet (const PointSetType *pointSet)

virtual const PointSetType *	GetMovingPointSet () const

virtual void	SetMovingPointSet (SizeValueType, const PointSetType *)

virtual const PointSetType *	GetMovingPointSet (SizeValueType) const

virtual void	SetOptimizer (OptimizerType *_arg)

virtual OptimizerType *	GetModifiableOptimizer ()

virtual const OptimizerType *	GetOptimizer () const

void	SetOptimizerWeights (OptimizerWeightsType &)

virtual OptimizerWeightsType	GetOptimizerWeights () const

virtual void	SetMetric (MetricType *_arg)

virtual MetricType *	GetModifiableMetric ()

virtual const MetricType *	GetMetric () const

virtual void	SetMetricSamplingStrategy (const MetricSamplingStrategyEnum _arg)

virtual MetricSamplingStrategyEnum	GetMetricSamplingStrategy () const

void	MetricSamplingReinitializeSeed ()

void	MetricSamplingReinitializeSeed (int seed)

virtual void	SetMetricSamplingPercentagePerLevel (const MetricSamplingPercentageArrayType &samplingPercentages)

virtual MetricSamplingPercentageArrayType	GetMetricSamplingPercentagePerLevel () const

void	SetTransformParametersAdaptorsPerLevel (TransformParametersAdaptorsContainerType &)

const TransformParametersAdaptorsContainerType &	GetTransformParametersAdaptorsPerLevel () const

void	SetNumberOfLevels (const SizeValueType)

virtual SizeValueType	GetNumberOfLevels () const

virtual void	SetSmoothingSigmasPerLevel (SmoothingSigmasArrayType _arg)

virtual SmoothingSigmasArrayType	GetSmoothingSigmasPerLevel () const

virtual void	SetSmoothingSigmasAreSpecifiedInPhysicalUnits (bool _arg)

virtual bool	GetSmoothingSigmasAreSpecifiedInPhysicalUnits () const

virtual void	SmoothingSigmasAreSpecifiedInPhysicalUnitsOn ()

virtual void	SmoothingSigmasAreSpecifiedInPhysicalUnitsOff ()

virtual DecoratedOutputTransformType *	GetOutput ()

virtual const DecoratedOutputTransformType *	GetOutput () const

virtual void	SetInPlace (bool _arg)

virtual bool	GetInPlace () const

virtual void	InPlaceOn ()

virtual void	InPlaceOff ()

virtual void	InitializeCenterOfLinearOutputTransformOn ()

virtual void	InitializeCenterOfLinearOutputTransformOff ()

virtual void	SetInitializeCenterOfLinearOutputTransform (bool _arg)

virtual bool	GetInitializeCenterOfLinearOutputTransform () const

Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

virtual void	EnlargeOutputRequestedRegion (DataObject *output)

virtual const bool &	GetAbortGenerateData () const

DataObjectPointerArray	GetIndexedInputs ()

DataObjectPointerArray	GetIndexedOutputs ()

NameArray	GetInputNames () const

DataObjectPointerArray	GetInputs ()

MultiThreaderBase *	GetMultiThreader () const

DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const

DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const

DataObjectPointerArraySizeType	GetNumberOfInputs () const

DataObjectPointerArraySizeType	GetNumberOfOutputs () const

virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const

NameArray	GetOutputNames () const

DataObjectPointerArray	GetOutputs ()

virtual float	GetProgress () const

NameArray	GetRequiredInputNames () const

bool	HasInput (const DataObjectIdentifierType &key) const

bool	HasOutput (const DataObjectIdentifierType &key) const

void	IncrementProgress (float increment)

virtual void	PrepareOutputs ()

virtual void	PropagateRequestedRegion (DataObject *output)

virtual void	ResetPipeline ()

virtual void	SetAbortGenerateData (bool _arg)

void	SetMultiThreader (MultiThreaderBase *threader)

virtual void	Update ()

virtual void	UpdateLargestPossibleRegion ()

virtual void	UpdateOutputData (DataObject *output)

virtual void	UpdateOutputInformation ()

void	UpdateProgress (float progress)

virtual void	SetReleaseDataFlag (bool val)

virtual bool	GetReleaseDataFlag () const

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)

virtual const bool &	GetReleaseDataBeforeUpdateFlag () const

virtual void	ReleaseDataBeforeUpdateFlagOn ()

virtual void	ReleaseDataBeforeUpdateFlagOff ()

	itkVirtualSetClampMacro (NumberOfWorkUnits, ThreadIdType, 1, ITK_MAX_THREADS)

virtual const ThreadIdType &	GetNumberOfWorkUnits () const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *cmd) const

unsigned long	AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary ()

const MetaDataDictionary &	GetMetaDataDictionary () const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

void	Register () const override

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag) const

void	SetDebug (bool debugFlag) const

void	SetReferenceCount (int) override

void	UnRegister () const noexcept override

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

void	SetMetaDataDictionary (MetaDataDictionary &&rrhs)

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
Pointer	Clone () const

virtual void	Delete ()

virtual int	GetReferenceCount () const

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >
static Pointer	New ()

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool val)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Static Public Attributes
static constexpr unsigned int	ImageDimension = TFixedImage::ImageDimension

Static Public Attributes inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >
static constexpr unsigned int	ImageDimension = TFixedImage::ImageDimension

Protected Member Functions
virtual DisplacementFieldPointer	ComputeMetricGradientField (const FixedImagesContainerType, const PointSetsContainerType, const TransformBaseType , const MovingImagesContainerType, const PointSetsContainerType, const TransformBaseType , const FixedImageMasksContainerType, const MovingImageMasksContainerType, MeasureType &)

virtual DisplacementFieldPointer	ComputeUpdateField (const FixedImagesContainerType, const PointSetsContainerType, const TransformBaseType , const MovingImagesContainerType, const PointSetsContainerType, const TransformBaseType , const FixedImageMasksContainerType, const MovingImageMasksContainerType, MeasureType &)

virtual DisplacementFieldPointer	GaussianSmoothDisplacementField (const DisplacementFieldType *, const RealType)

void	GenerateData () override

void	InitializeRegistrationAtEachLevel (const SizeValueType) override

virtual DisplacementFieldPointer	InvertDisplacementField (const DisplacementFieldType , const DisplacementFieldType =nullptr)

void	PrintSelf (std::ostream &os, Indent indent) const override

virtual DisplacementFieldPointer	ScaleUpdateField (const DisplacementFieldType *)

virtual void	StartOptimization ()

	SyNImageRegistrationMethod ()

	~SyNImageRegistrationMethod () override=default

Protected Member Functions inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >
virtual void	AllocateOutputs ()

virtual VirtualImageBaseConstPointer	GetCurrentLevelVirtualDomainImage ()

	ImageRegistrationMethodv4 ()

virtual void	SetMetricSamplePoints ()

	~ImageRegistrationMethodv4 () override=default

Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)

void	AddOptionalInputName (const DataObjectIdentifierType &)

void	AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

virtual void	AddOutput (DataObject *output)

bool	AddRequiredInputName (const DataObjectIdentifierType &)

bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

virtual void	CacheInputReleaseDataFlags ()

virtual void	GenerateInputRequestedRegion ()

virtual void	GenerateOutputInformation ()

virtual void	GenerateOutputRequestedRegion (DataObject *output)

DataObject *	GetInput (const DataObjectIdentifierType &key)

const DataObject *	GetInput (const DataObjectIdentifierType &key) const

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const

bool	IsIndexedInputName (const DataObjectIdentifierType &) const

bool	IsIndexedOutputName (const DataObjectIdentifierType &) const

bool	IsRequiredInputName (const DataObjectIdentifierType &) const

DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const

DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const

DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const

DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const

virtual void	PopBackInput ()

virtual void	PopFrontInput ()

	ProcessObject ()

virtual void	PropagateResetPipeline ()

virtual void	PushBackInput (const DataObject *input)

virtual void	PushFrontInput (const DataObject *input)

virtual void	ReleaseInputs ()

virtual void	RemoveInput (const DataObjectIdentifierType &key)

virtual void	RemoveInput (DataObjectPointerArraySizeType)

virtual void	RemoveOutput (const DataObjectIdentifierType &key)

virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)

bool	RemoveRequiredInputName (const DataObjectIdentifierType &)

virtual void	RestoreInputReleaseDataFlags ()

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input)

virtual void	SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output)

void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)

void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)

virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)

virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)

virtual void	SetOutput (const DataObjectIdentifierType &name, DataObject *output)

virtual void	SetPrimaryInput (DataObject *object)

virtual void	SetPrimaryOutput (DataObject *object)

void	SetRequiredInputNames (const NameArray &)

virtual void	VerifyInputInformation () const

virtual void	VerifyPreconditions () const

	~ProcessObject () override

DataObject *	GetInput (DataObjectPointerArraySizeType idx)

const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryInput ()

const DataObject *	GetPrimaryInput () const

virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryInputName () const

DataObject *	GetOutput (const DataObjectIdentifierType &key)

const DataObject *	GetOutput (const DataObjectIdentifierType &key) const

virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryOutputName () const

DataObject *	GetOutput (DataObjectPointerArraySizeType i)

const DataObject *	GetOutput (DataObjectPointerArraySizeType i) const

DataObject *	GetPrimaryOutput ()

const DataObject *	GetPrimaryOutput () const

virtual bool	GetThreaderUpdateProgress () const

virtual void	ThreaderUpdateProgressOn ()

virtual void	ThreaderUpdateProgressOff ()

virtual void	SetThreaderUpdateProgress (bool arg)

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &timeStamp)

	~Object () override

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
bool	m_AverageMidPointGradients { false }

RealType	m_ConvergenceThreshold { static_cast<RealType>(1.0e-6) }

unsigned int	m_ConvergenceWindowSize { 10 }

bool	m_DownsampleImagesForMetricDerivatives { true }

OutputTransformPointer	m_FixedToMiddleTransform { nullptr }

RealType	m_LearningRate { 0.25 }

OutputTransformPointer	m_MovingToMiddleTransform { nullptr }

NumberOfIterationsArrayType	m_NumberOfIterationsPerLevel {}

Protected Attributes inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >
CompositeTransformPointer	m_CompositeTransform {}

RealType	m_CurrentConvergenceValue {}

SizeValueType	m_CurrentIteration {}

SizeValueType	m_CurrentLevel {}

RealType	m_CurrentMetricValue {}

int	m_CurrentRandomSeed {}

int	m_FirstImageMetricIndex {}

FixedImageMasksContainerType	m_FixedImageMasks {}

PointSetsContainerType	m_FixedPointSets {}

FixedImagesContainerType	m_FixedSmoothImages {}

bool	m_IsConverged {}

MetricPointer	m_Metric {}

MetricSamplingPercentageArrayType	m_MetricSamplingPercentagePerLevel {}

MetricSamplingStrategyEnum	m_MetricSamplingStrategy {}

MovingImageMasksContainerType	m_MovingImageMasks {}

PointSetsContainerType	m_MovingPointSets {}

MovingImagesContainerType	m_MovingSmoothImages {}

SizeValueType	m_NumberOfFixedObjects {}

SizeValueType	m_NumberOfLevels { 0 }

SizeValueType	m_NumberOfMetrics {}

SizeValueType	m_NumberOfMovingObjects {}

OptimizerPointer	m_Optimizer {}

OptimizerWeightsType	m_OptimizerWeights {}

bool	m_OptimizerWeightsAreIdentity {}

OutputTransformPointer	m_OutputTransform {}

int	m_RandomSeed {}

bool	m_ReseedIterator {}

std::vector< ShrinkFactorsPerDimensionContainerType >	m_ShrinkFactorsPerLevel {}

bool	m_SmoothingSigmasAreSpecifiedInPhysicalUnits {}

SmoothingSigmasArrayType	m_SmoothingSigmasPerLevel {}

TransformParametersAdaptorsContainerType	m_TransformParametersAdaptorsPerLevel {}

VirtualImagePointer	m_VirtualDomainImage {}

Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime {}

bool	m_Updating {}

Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount {}

Private Attributes
RealType	m_GaussianSmoothingVarianceForTheTotalField { 0.5 }

RealType	m_GaussianSmoothingVarianceForTheUpdateField { 3.0 }

Additional Inherited Members
Static Protected Member Functions inherited from itk::ProcessObject
template<typename TSourceObject>
static void	MakeRequiredOutputs (TSourceObject &sourceObject, const DataObjectPointerArraySizeType numberOfRequiredOutputs)

static constexpr float	progressFixedToFloat (uint32_t fixed)

static uint32_t	progressFloatToFixed (float f)

Member Typedef Documentation

◆ ConstPointer

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ConstPointer = SmartPointer<const Self>

Definition at line 71 of file itkSyNImageRegistrationMethod.h.

◆ DecoratedOutputTransformPointer

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DecoratedOutputTransformPointer = typename DecoratedOutputTransformType::Pointer

Definition at line 130 of file itkSyNImageRegistrationMethod.h.

◆ DerivativeType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DerivativeType = typename OutputTransformType::DerivativeType

Definition at line 120 of file itkSyNImageRegistrationMethod.h.

◆ DerivativeValueType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DerivativeValueType = typename DerivativeType::ValueType

Definition at line 121 of file itkSyNImageRegistrationMethod.h.

◆ DisplacementFieldPointer

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DisplacementFieldPointer = typename DisplacementFieldType::Pointer

Definition at line 123 of file itkSyNImageRegistrationMethod.h.

◆ DisplacementFieldTransformPointer

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DisplacementFieldTransformPointer = typename DisplacementFieldTransformType::Pointer

Definition at line 133 of file itkSyNImageRegistrationMethod.h.

◆ DisplacementFieldTransformType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DisplacementFieldTransformType = DisplacementFieldTransform<RealType, ImageDimension>

Definition at line 132 of file itkSyNImageRegistrationMethod.h.

◆ DisplacementFieldType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DisplacementFieldType = typename OutputTransformType::DisplacementFieldType

Definition at line 122 of file itkSyNImageRegistrationMethod.h.

◆ DisplacementVectorType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DisplacementVectorType = typename DisplacementFieldType::PixelType

Definition at line 124 of file itkSyNImageRegistrationMethod.h.

◆ FixedImagePointer

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::FixedImagePointer = typename FixedImageType::Pointer

Definition at line 84 of file itkSyNImageRegistrationMethod.h.

◆ FixedImageType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::FixedImageType = TFixedImage

Input type alias for the images.

Definition at line 83 of file itkSyNImageRegistrationMethod.h.

◆ FixedMaskImageType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::FixedMaskImageType = typename ImageMaskSpatialObjectType::ImageType

Definition at line 101 of file itkSyNImageRegistrationMethod.h.

◆ ImageMaskSpatialObjectType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ImageMaskSpatialObjectType = ImageMaskSpatialObject<ImageDimension>

Definition at line 99 of file itkSyNImageRegistrationMethod.h.

◆ ImageMetricPointer

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ImageMetricPointer = typename ImageMetricType::Pointer

Definition at line 96 of file itkSyNImageRegistrationMethod.h.

◆ MeasureType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MeasureType = typename ImageMetricType::MeasureType

Definition at line 97 of file itkSyNImageRegistrationMethod.h.

◆ MetricPointer

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MetricPointer = typename MetricType::Pointer

Definition at line 113 of file itkSyNImageRegistrationMethod.h.

◆ MovingImagePointer

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MovingImagePointer = typename MovingImageType::Pointer

Definition at line 87 of file itkSyNImageRegistrationMethod.h.

◆ MovingImageType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MovingImageType = TMovingImage

Definition at line 86 of file itkSyNImageRegistrationMethod.h.

◆ MovingMaskImageType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MovingMaskImageType = typename ImageMaskSpatialObjectType::ImageType

Definition at line 104 of file itkSyNImageRegistrationMethod.h.

◆ NumberOfIterationsArrayType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::NumberOfIterationsArrayType = Array<SizeValueType>

Definition at line 135 of file itkSyNImageRegistrationMethod.h.

◆ OutputTransformPointer

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::OutputTransformPointer = typename OutputTransformType::Pointer

Definition at line 118 of file itkSyNImageRegistrationMethod.h.

◆ OutputTransformType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::OutputTransformType = TOutputTransform

Definition at line 117 of file itkSyNImageRegistrationMethod.h.

◆ Pointer

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::Pointer = SmartPointer<Self>

Definition at line 70 of file itkSyNImageRegistrationMethod.h.

◆ PointSetPointer

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::PointSetPointer = typename PointSetType::Pointer

Definition at line 91 of file itkSyNImageRegistrationMethod.h.

◆ RealType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::RealType = typename OutputTransformType::ScalarType

Definition at line 119 of file itkSyNImageRegistrationMethod.h.

◆ Self

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::Self = SyNImageRegistrationMethod

Standard class type aliases.

Definition at line 68 of file itkSyNImageRegistrationMethod.h.

◆ Superclass

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::Superclass = ImageRegistrationMethodv4<TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet>

Definition at line 69 of file itkSyNImageRegistrationMethod.h.

◆ TransformBaseType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::TransformBaseType = typename CompositeTransformType::TransformType

Definition at line 127 of file itkSyNImageRegistrationMethod.h.

◆ VirtualImageType

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::VirtualImageType = typename Superclass::VirtualImageType

Definition at line 107 of file itkSyNImageRegistrationMethod.h.

Constructor & Destructor Documentation

◆ SyNImageRegistrationMethod()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SyNImageRegistrationMethod ( )

protected

◆ ~SyNImageRegistrationMethod()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::~SyNImageRegistrationMethod ( )

overrideprotecteddefault

Member Function Documentation

◆ ComputeMetricGradientField()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual DisplacementFieldPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ComputeMetricGradientField	(	const FixedImagesContainerType	,
		const PointSetsContainerType	,
		const TransformBaseType *	,
		const MovingImagesContainerType	,
		const PointSetsContainerType	,
		const TransformBaseType *	,
		const FixedImageMasksContainerType	,
		const MovingImageMasksContainerType	,
		MeasureType &	)

protectedvirtual

◆ ComputeUpdateField()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual DisplacementFieldPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ComputeUpdateField	(	const FixedImagesContainerType	,
		const PointSetsContainerType	,
		const TransformBaseType *	,
		const MovingImagesContainerType	,
		const PointSetsContainerType	,
		const TransformBaseType *	,
		const FixedImageMasksContainerType	,
		const MovingImageMasksContainerType	,
		MeasureType &	)

protectedvirtual

Reimplemented in itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >.

◆ CreateAnother()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual::itk::LightObject::Pointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::CreateAnother ( ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >.

◆ GaussianSmoothDisplacementField()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual DisplacementFieldPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GaussianSmoothDisplacementField	(	const DisplacementFieldType *	,
		const RealType	)

protectedvirtual

◆ GenerateData()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GenerateData ( )

overrideprotectedvirtual

Perform the registration.

Reimplemented from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >.

◆ GetAverageMidPointGradients()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual bool itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetAverageMidPointGradients ( ) const

virtual

Allow the user to average the gradients in the mid-point domain. Default false. One might choose to do this to further reduce bias.

◆ GetConvergenceThreshold()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual RealType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetConvergenceThreshold ( ) const

virtual

Set/Get the convergence threshold

◆ GetConvergenceWindowSize()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual unsigned int itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetConvergenceWindowSize ( ) const

virtual

Set/Get the convergence window size

◆ GetDownsampleImagesForMetricDerivatives()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual bool itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetDownsampleImagesForMetricDerivatives ( ) const

virtual

Let the user control whether we compute metric derivatives in the downsampled or full-res space. The default is 'true' — classic SyN — but there may be advantages to the other approach. Classic SyN did not have this possibility. This implementation will let us explore the question.

◆ GetFixedToMiddleTransform()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual const OutputTransformType * itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetFixedToMiddleTransform ( ) const

virtual

Get modifiable FixedToMiddle and MovingToMiddle transforms to save the current state of the registration.

◆ GetGaussianSmoothingVarianceForTheTotalField()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual const RealType & itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetGaussianSmoothingVarianceForTheTotalField ( ) const

virtual

Get/Set the Gaussian smoothing variance for the total field.

◆ GetGaussianSmoothingVarianceForTheUpdateField()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual const RealType & itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetGaussianSmoothingVarianceForTheUpdateField ( ) const

virtual

Get/Set the Gaussian smoothing variance for the update field.

◆ GetLearningRate()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual RealType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetLearningRate ( ) const

virtual

Set/Get the learning rate.

◆ GetModifiableFixedToMiddleTransform()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual OutputTransformType * itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetModifiableFixedToMiddleTransform ( )

virtual

Get modifiable FixedToMiddle and MovingToMiddle transforms to save the current state of the registration.

◆ GetModifiableMovingToMiddleTransform()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual OutputTransformType * itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetModifiableMovingToMiddleTransform ( )

virtual

Get modifiable FixedToMiddle and MovingToMiddle transforms to save the current state of the registration.

◆ GetMovingToMiddleTransform()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual const OutputTransformType * itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetMovingToMiddleTransform ( ) const

virtual

Get modifiable FixedToMiddle and MovingToMiddle transforms to save the current state of the registration.

◆ GetNameOfClass()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual const char * itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetNameOfClass ( ) const

virtual

See also: LightObject::GetNameOfClass()

Reimplemented from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >.

Reimplemented in itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >.

◆ GetNumberOfIterationsPerLevel()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual NumberOfIterationsArrayType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetNumberOfIterationsPerLevel ( ) const

virtual

Set/Get the number of iterations per level.

◆ InitializeRegistrationAtEachLevel()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::InitializeRegistrationAtEachLevel ( const SizeValueType )

overrideprotectedvirtual

Initialize by setting the interconnects between the components. Need to override in the SyN class since we need to "adapt" the m_InverseTransform

Reimplemented from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >.

◆ InvertDisplacementField()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual DisplacementFieldPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::InvertDisplacementField	(	const DisplacementFieldType *	,
		const DisplacementFieldType *	= nullptr )

protectedvirtual

◆ New()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

static Pointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::New ( )

static

Method for creation through the object factory.

◆ PrintSelf()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::PrintSelf	(	std::ostream &	os,
		Indent	indent ) const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >.

◆ ScaleUpdateField()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual DisplacementFieldPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ScaleUpdateField ( const DisplacementFieldType * )

protectedvirtual

◆ SetAverageMidPointGradients()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetAverageMidPointGradients ( bool _arg )

virtual

Allow the user to average the gradients in the mid-point domain. Default false. One might choose to do this to further reduce bias.

◆ SetConvergenceThreshold()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetConvergenceThreshold ( RealType _arg )

virtual

Set/Get the convergence threshold

◆ SetConvergenceWindowSize()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetConvergenceWindowSize ( unsigned int _arg )

virtual

Set/Get the convergence window size

◆ SetDownsampleImagesForMetricDerivatives()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetDownsampleImagesForMetricDerivatives ( bool _arg )

virtual

Let the user control whether we compute metric derivatives in the downsampled or full-res space. The default is 'true' — classic SyN — but there may be advantages to the other approach. Classic SyN did not have this possibility. This implementation will let us explore the question.

◆ SetFixedToMiddleTransform()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetFixedToMiddleTransform ( OutputTransformType * _arg )

virtual

Set FixedToMiddle and MovingToMiddle transforms to restore the registration from a saved state.

◆ SetGaussianSmoothingVarianceForTheTotalField()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetGaussianSmoothingVarianceForTheTotalField ( RealType _arg )

virtual

Get/Set the Gaussian smoothing variance for the total field.

◆ SetGaussianSmoothingVarianceForTheUpdateField()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetGaussianSmoothingVarianceForTheUpdateField ( RealType _arg )

virtual

Get/Set the Gaussian smoothing variance for the update field.

◆ SetLearningRate()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetLearningRate ( RealType _arg )

virtual

Set/Get the learning rate.

◆ SetMovingToMiddleTransform()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetMovingToMiddleTransform ( OutputTransformType * _arg )

virtual

Set FixedToMiddle and MovingToMiddle transforms to restore the registration from a saved state.

◆ SetNumberOfIterationsPerLevel()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetNumberOfIterationsPerLevel ( NumberOfIterationsArrayType _arg )

virtual

Set/Get the number of iterations per level.

◆ StartOptimization()

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::StartOptimization ( )

protectedvirtual

Handle optimization internally. Starts the optimization at each level. Performs a basic gradient descent operation.

Reimplemented in itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >.

Member Data Documentation

◆ ImageDimension

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

unsigned int itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ImageDimension = TFixedImage::ImageDimension

staticconstexpr

ImageDimension constants

Definition at line 77 of file itkSyNImageRegistrationMethod.h.

◆ m_AverageMidPointGradients

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

bool itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_AverageMidPointGradients { false }

protected

Definition at line 257 of file itkSyNImageRegistrationMethod.h.

◆ m_ConvergenceThreshold

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

RealType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_ConvergenceThreshold { static_cast<RealType>(1.0e-6) }

protected

Definition at line 252 of file itkSyNImageRegistrationMethod.h.

◆ m_ConvergenceWindowSize

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

unsigned int itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_ConvergenceWindowSize { 10 }

protected

Definition at line 253 of file itkSyNImageRegistrationMethod.h.

◆ m_DownsampleImagesForMetricDerivatives

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

bool itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_DownsampleImagesForMetricDerivatives { true }

protected

Definition at line 256 of file itkSyNImageRegistrationMethod.h.

◆ m_FixedToMiddleTransform

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

OutputTransformPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_FixedToMiddleTransform { nullptr }

protected

Definition at line 250 of file itkSyNImageRegistrationMethod.h.

◆ m_GaussianSmoothingVarianceForTheTotalField

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

RealType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_GaussianSmoothingVarianceForTheTotalField { 0.5 }

private

Definition at line 261 of file itkSyNImageRegistrationMethod.h.

◆ m_GaussianSmoothingVarianceForTheUpdateField

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

RealType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_GaussianSmoothingVarianceForTheUpdateField { 3.0 }

private

Definition at line 260 of file itkSyNImageRegistrationMethod.h.

◆ m_LearningRate

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

RealType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_LearningRate { 0.25 }

protected

Definition at line 247 of file itkSyNImageRegistrationMethod.h.

◆ m_MovingToMiddleTransform

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

OutputTransformPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_MovingToMiddleTransform { nullptr }

protected

Definition at line 249 of file itkSyNImageRegistrationMethod.h.

◆ m_NumberOfIterationsPerLevel

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>

NumberOfIterationsArrayType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_NumberOfIterationsPerLevel {}

protected

Definition at line 255 of file itkSyNImageRegistrationMethod.h.

The documentation for this class was generated from the following file:

itkSyNImageRegistrationMethod.h

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ ConstPointer

◆ DecoratedOutputTransformPointer

◆ DerivativeType

◆ DerivativeValueType

◆ DisplacementFieldPointer

◆ DisplacementFieldTransformPointer

◆ DisplacementFieldTransformType

◆ DisplacementFieldType

◆ DisplacementVectorType

◆ FixedImagePointer

◆ FixedImageType

◆ FixedMaskImageType

◆ ImageMaskSpatialObjectType

◆ ImageMetricPointer

◆ MeasureType

◆ MetricPointer

◆ MovingImagePointer

◆ MovingImageType

◆ MovingMaskImageType

◆ NumberOfIterationsArrayType

◆ OutputTransformPointer

◆ OutputTransformType

◆ Pointer

◆ PointSetPointer

◆ RealType

◆ Self

◆ Superclass

◆ TransformBaseType

◆ VirtualImageType

Constructor & Destructor Documentation

◆ SyNImageRegistrationMethod()

◆ ~SyNImageRegistrationMethod()

Member Function Documentation

◆ ComputeMetricGradientField()

◆ ComputeUpdateField()

◆ CreateAnother()

◆ GaussianSmoothDisplacementField()

◆ GenerateData()

◆ GetAverageMidPointGradients()

◆ GetConvergenceThreshold()

◆ GetConvergenceWindowSize()

◆ GetDownsampleImagesForMetricDerivatives()

◆ GetFixedToMiddleTransform()

◆ GetGaussianSmoothingVarianceForTheTotalField()

◆ GetGaussianSmoothingVarianceForTheUpdateField()

◆ GetLearningRate()

◆ GetModifiableFixedToMiddleTransform()

◆ GetModifiableMovingToMiddleTransform()

◆ GetMovingToMiddleTransform()

◆ GetNameOfClass()

◆ GetNumberOfIterationsPerLevel()

◆ InitializeRegistrationAtEachLevel()

◆ InvertDisplacementField()

◆ New()

◆ PrintSelf()

◆ ScaleUpdateField()

◆ SetAverageMidPointGradients()

◆ SetConvergenceThreshold()

◆ SetConvergenceWindowSize()

◆ SetDownsampleImagesForMetricDerivatives()

◆ SetFixedToMiddleTransform()

◆ SetGaussianSmoothingVarianceForTheTotalField()

◆ SetGaussianSmoothingVarianceForTheUpdateField()

◆ SetLearningRate()

◆ SetMovingToMiddleTransform()

◆ SetNumberOfIterationsPerLevel()

◆ StartOptimization()

Member Data Documentation

◆ ImageDimension

◆ m_AverageMidPointGradients