template<typename TParametersValueType, unsigned int VDimension>
class itk::TimeVaryingVelocityFieldTransform< TParametersValueType, VDimension >
Transform objects based on integration of a time-varying velocity field.
Diffeomorphisms are topology-preserving mappings that are useful for describing biologically plausible deformations. Mathematically, a diffeomorphism, \(\phi\), is generated from a time-varying velocity field, v, as described by the first-order differential equation:
\[ v(\phi(x,t), t) = \frac{d\phi(x, t)}{dt}, \phi(x, 0) = x
\]
In this class, the input is the time-varying velocity field. The output diffeomorphism is produced using fourth order Runge-Kutta.
- Warning
- The output deformation field needs to have dimensionality of 1 less than the input time-varying velocity field. It is assumed that the last dimension of the time-varying velocity field corresponds to Time, and the other dimensions represent Space.
- Author
- Nick Tustison
-
Brian Avants
Definition at line 54 of file itkTimeVaryingVelocityFieldTransform.h.
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| using | ConstPointer = SmartPointer<const Self> |
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| using | FixedParametersValueType = typename FixedParametersType::ValueType |
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| using | ParametersValueType = typename ParametersType::ValueType |
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| using | Pointer = SmartPointer<Self> |
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| using | Self = TimeVaryingVelocityFieldTransform |
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| using | Superclass = VelocityFieldTransform<TParametersValueType, VDimension> |
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| using | TimeVaryingVelocityFieldPointer = typename VelocityFieldType::Pointer |
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| using | TimeVaryingVelocityFieldType = VelocityFieldType |
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| using | TransformPointer = typename Transform<TParametersValueType, VDimension, VDimension>::Pointer |
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| using | VelocityFieldIntegratorType = typename Superclass::VelocityFieldInterpolatorType |
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| using | VelocityFieldType |
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| using | ConstPointer = SmartPointer<const Self> |
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| using | DerivativeType |
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| using | DirectionType = typename VelocityFieldType::DirectionType |
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| using | DisplacementFieldPointer = typename DisplacementFieldType::Pointer |
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| using | DisplacementFieldType |
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| typedef OptimizerParameters< FixedParametersValueType > | FixedParametersType |
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| typedef double | FixedParametersValueType |
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| using | IndexType = typename VelocityFieldType::IndexType |
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| using | InputPointType |
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| using | InputVectorPixelType |
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| using | InputVectorType |
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| using | InverseTransformBasePointer |
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| typedef IdentifierType | NumberOfParametersType |
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| using | OptimizerParametersHelperType |
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| using | OutputPointType |
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| using | OutputVectorPixelType |
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| using | OutputVectorType |
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| typedef OptimizerParameters< ParametersValueType > | ParametersType |
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| typedef TParametersValueType | ParametersValueType |
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| using | PixelType = typename VelocityFieldType::PixelType |
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| using | Pointer = SmartPointer<Self> |
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| using | PointType = typename VelocityFieldType::PointType |
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| using | RegionType = typename VelocityFieldType::RegionType |
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| using | ScalarType |
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| using | Self = VelocityFieldTransform |
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| using | SizeType = typename VelocityFieldType::SizeType |
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| using | SpacingType = typename VelocityFieldType::SpacingType |
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| using | Superclass = DisplacementFieldTransform<TParametersValueType, VDimension> |
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| typedef TransformBaseTemplateEnums::TransformCategory | TransformCategoryEnum |
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| using | VectorImageDisplacementFieldType |
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| using | VelocityFieldInterpolatorPointer = typename VelocityFieldInterpolatorType::Pointer |
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| using | VelocityFieldInterpolatorType = VectorInterpolateImageFunction<VelocityFieldType, ScalarType> |
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| using | VelocityFieldPointer = typename VelocityFieldType::Pointer |
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| using | VelocityFieldType = Image<OutputVectorType, VelocityFieldDimension> |
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| using | ConstPointer = SmartPointer<const Self> |
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| using | DerivativeType |
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| using | DirectionType = typename DisplacementFieldType::DirectionType |
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| using | DisplacementFieldConstPointer = typename DisplacementFieldType::ConstPointer |
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| using | DisplacementFieldPointer = typename DisplacementFieldType::Pointer |
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| using | DisplacementFieldType = Image<OutputVectorType, Dimension> |
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| typedef OptimizerParameters< FixedParametersValueType > | FixedParametersType |
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| typedef double | FixedParametersValueType |
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| using | IndexType = typename DisplacementFieldType::IndexType |
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| using | InputCovariantVectorType |
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| using | InputDiffusionTensor3DType |
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| using | InputPointType |
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| using | InputTensorEigenVectorType = CovariantVector<ScalarType, InputDiffusionTensor3DType::Dimension> |
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| using | InputVectorPixelType |
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| using | InputVectorType |
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| using | InputVnlVectorType |
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| using | InterpolatorType = VectorInterpolateImageFunction<DisplacementFieldType, ScalarType> |
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| using | InverseJacobianPositionType |
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| using | InverseTransformBasePointer |
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| using | JacobianPositionType |
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| using | JacobianType |
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| typedef IdentifierType | NumberOfParametersType |
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| using | OptimizerParametersHelperType |
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| using | OutputCovariantVectorType |
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| using | OutputDiffusionTensor3DType |
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| using | OutputPointType |
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| using | OutputTensorEigenVectorType = CovariantVector<ScalarType, OutputDiffusionTensor3DType::Dimension> |
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| using | OutputVectorPixelType |
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| using | OutputVectorType |
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| using | OutputVnlVectorType |
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| typedef OptimizerParameters< ParametersValueType > | ParametersType |
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| typedef TParametersValueType | ParametersValueType |
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| using | PixelType = typename DisplacementFieldType::PixelType |
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| using | Pointer = SmartPointer<Self> |
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| using | PointType = typename DisplacementFieldType::PointType |
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| using | RegionType = typename DisplacementFieldType::RegionType |
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| using | ScalarType |
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| using | Self = DisplacementFieldTransform |
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| using | SizeType = typename DisplacementFieldType::SizeType |
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| using | SpacingType = typename DisplacementFieldType::SpacingType |
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| using | Superclass = Transform<TParametersValueType, VDimension, VDimension> |
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| typedef TransformBaseTemplateEnums::TransformCategory | TransformCategoryEnum |
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| using | VectorImageDisplacementFieldType = VectorImage<TParametersValueType, Dimension> |
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| using | ConstPointer |
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| using | ConstPointer |
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| using | DerivativeType |
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| using | DerivativeType |
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| using | DirectionChangeMatrix |
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| using | DirectionChangeMatrix |
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| typedef OptimizerParameters< FixedParametersValueType > | FixedParametersType |
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| using | FixedParametersType |
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| typedef double | FixedParametersValueType |
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| using | FixedParametersValueType |
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| using | InputCovariantVectorType |
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| using | InputCovariantVectorType |
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| using | InputDiffusionTensor3DType |
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| using | InputDiffusionTensor3DType |
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| using | InputDirectionMatrix |
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| using | InputDirectionMatrix |
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| using | InputPointType |
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| using | InputPointType |
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| using | InputSymmetricSecondRankTensorType |
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| using | InputSymmetricSecondRankTensorType |
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| using | InputVectorPixelType |
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| using | InputVectorPixelType |
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| using | InputVectorType |
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| using | InputVectorType |
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| using | InputVnlVectorType |
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| using | InputVnlVectorType |
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| using | InverseJacobianPositionType |
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| using | InverseJacobianPositionType |
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| using | InverseTransformBasePointer |
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| using | InverseTransformBasePointer |
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| using | InverseTransformBaseType |
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| using | InverseTransformBaseType |
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| using | JacobianPositionType |
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| using | JacobianPositionType |
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| using | JacobianType |
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| using | JacobianType |
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| using | MatrixType |
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| using | MatrixType |
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| typedef IdentifierType | NumberOfParametersType |
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| using | NumberOfParametersType |
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| using | OutputCovariantVectorType |
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| using | OutputCovariantVectorType |
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| using | OutputDiffusionTensor3DType |
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| using | OutputDiffusionTensor3DType |
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| using | OutputDirectionMatrix |
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| using | OutputDirectionMatrix |
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| using | OutputPointType |
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| using | OutputPointType |
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| using | OutputSymmetricSecondRankTensorType |
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| using | OutputSymmetricSecondRankTensorType |
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| using | OutputVectorPixelType |
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| using | OutputVectorPixelType |
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| using | OutputVectorType |
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| using | OutputVectorType |
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| using | OutputVnlVectorType |
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| using | OutputVnlVectorType |
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| typedef OptimizerParameters< ParametersValueType > | ParametersType |
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| using | ParametersType |
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| typedef TParametersValueType | ParametersValueType |
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| using | ParametersValueType |
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| using | Pointer |
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| using | Pointer |
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| using | ScalarType |
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| using | ScalarType |
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| using | Self |
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| using | Self |
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| using | Superclass |
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| using | Superclass |
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| typedef TransformBaseTemplateEnums::TransformCategory | TransformCategoryEnum |
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| using | TransformCategoryEnum |
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| using | ConstPointer = SmartPointer<const Self> |
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| using | FixedParametersType = OptimizerParameters<FixedParametersValueType> |
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| using | FixedParametersValueType = double |
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| using | NumberOfParametersType = IdentifierType |
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| using | ParametersType = OptimizerParameters<ParametersValueType> |
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| using | ParametersValueType = TParametersValueType |
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| using | Pointer = SmartPointer<Self> |
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| using | Self = TransformBaseTemplate |
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| using | Superclass = Object |
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| using | TransformCategoryEnum = TransformBaseTemplateEnums::TransformCategory |
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| using | TransformCategoryType = TransformCategoryEnum |
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| virtual::itk::LightObject::Pointer | CreateAnother () const |
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| const char * | GetNameOfClass () const override |
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| void | IntegrateVelocityField () override |
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| virtual void | SetTimeVaryingVelocityField (VelocityFieldType *field) |
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| VelocityFieldType * | GetModifiableTimeVaryingVelocityField () |
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| const VelocityFieldType * | GetTimeVaryingVelocityField () const |
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| virtual::itk::LightObject::Pointer | CreateAnother () const |
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| bool | GetInverse (Self *inverse) const |
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| InverseTransformBasePointer | GetInverseTransform () const override |
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| virtual ScalarType | GetLowerTimeBound () const |
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| const char * | GetNameOfClass () const override |
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| virtual unsigned int | GetNumberOfIntegrationSteps () const |
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| virtual ScalarType | GetUpperTimeBound () const |
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| virtual const unsigned long & | GetVelocityFieldSetTime () const |
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| void | SetDisplacementField (std::nullptr_t)=delete |
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| virtual void | SetDisplacementField (VectorImageDisplacementFieldType *field) |
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| void | SetFixedParameters (const FixedParametersType &) override |
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| virtual void | SetLowerTimeBound (ScalarType _arg) |
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| virtual void | SetNumberOfIntegrationSteps (unsigned int _arg) |
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| virtual void | SetUpperTimeBound (ScalarType _arg) |
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| void | UpdateTransformParameters (const DerivativeType &update, ScalarType factor=1.0) override |
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| virtual void | SetVelocityField (VelocityFieldType *) |
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| virtual VelocityFieldType * | GetModifiableVelocityField () |
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| virtual const VelocityFieldType * | GetVelocityField () const |
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| virtual void | SetVelocityFieldInterpolator (VelocityFieldInterpolatorType *) |
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| virtual VelocityFieldInterpolatorType * | GetModifiableVelocityFieldInterpolator () |
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| virtual const VelocityFieldInterpolatorType * | GetVelocityFieldInterpolator () const |
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| void | SetDisplacementField (DisplacementFieldType *displacementField) override |
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| void | ComputeInverseJacobianWithRespectToPosition (const InputPointType &point, InverseJacobianPositionType &jacobian) const override |
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| virtual void | ComputeJacobianWithRespectToParameters (const IndexType &, JacobianType &j) const |
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| virtual void | ComputeJacobianWithRespectToPosition (const IndexType &index, JacobianPositionType &jacobian) const |
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| void | ComputeJacobianWithRespectToPosition (const InputPointType &point, JacobianPositionType &jacobian) const override |
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| virtual::itk::LightObject::Pointer | CreateAnother () const |
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| virtual const ModifiedTimeType & | GetDisplacementFieldSetTime () const |
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| bool | GetInverse (Self *inverse) const |
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| virtual void | GetInverseJacobianOfForwardFieldWithRespectToPosition (const IndexType &index, JacobianPositionType &jacobian, bool useSVD=false) const |
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| virtual void | GetInverseJacobianOfForwardFieldWithRespectToPosition (const InputPointType &point, JacobianPositionType &jacobian, bool useSVD=false) const |
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| const char * | GetNameOfClass () const override |
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| NumberOfParametersType | GetNumberOfLocalParameters () const override |
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| TransformCategoryEnum | GetTransformCategory () const override |
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| virtual void | SetIdentity () |
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| OutputVectorPixelType | TransformCovariantVector (const InputVectorPixelType &) const override |
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| OutputVectorPixelType | TransformDiffusionTensor (const InputVectorPixelType &) const |
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| OutputPointType | TransformPoint (const InputPointType &inputPoint) const override |
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| OutputVectorPixelType | TransformVector (const InputVectorPixelType &) const override |
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| OutputVnlVectorType | TransformVector (const InputVnlVectorType &) const override |
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| void | SetDisplacementField (std::nullptr_t)=delete |
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| virtual DisplacementFieldType * | GetModifiableDisplacementField () |
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| virtual const DisplacementFieldType * | GetDisplacementField () const |
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| virtual void | SetInverseDisplacementField (DisplacementFieldType *inverseField) |
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| virtual DisplacementFieldType * | GetModifiableInverseDisplacementField () |
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| virtual const DisplacementFieldType * | GetInverseDisplacementField () const |
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| virtual void | SetInterpolator (InterpolatorType *interpolator) |
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| virtual InterpolatorType * | GetModifiableInterpolator () |
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| virtual const InterpolatorType * | GetInterpolator () const |
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| virtual void | SetInverseInterpolator (InterpolatorType *interpolator) |
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| virtual InterpolatorType * | GetModifiableInverseInterpolator () |
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| virtual const InterpolatorType * | GetInverseInterpolator () const |
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| OutputVectorType | TransformVector (const InputVectorType &) const override |
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| virtual OutputVectorType | TransformVector (const InputVectorType &vector, const InputPointType &point) const |
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| virtual OutputVnlVectorType | TransformVector (const InputVnlVectorType &vector, const InputPointType &point) const |
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| virtual OutputVectorPixelType | TransformVector (const InputVectorPixelType &vector, const InputPointType &point) const |
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| OutputDiffusionTensor3DType | TransformDiffusionTensor (const InputDiffusionTensor3DType &) const |
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| virtual OutputDiffusionTensor3DType | TransformDiffusionTensor3D (const InputDiffusionTensor3DType &tensor) const |
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| virtual OutputDiffusionTensor3DType | TransformDiffusionTensor3D (const InputDiffusionTensor3DType &inputTensor, const InputPointType &point) const |
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| virtual OutputVectorPixelType | TransformDiffusionTensor3D (const InputVectorPixelType &tensor) const |
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| virtual OutputVectorPixelType | TransformDiffusionTensor3D (const InputVectorPixelType &inputTensor, const InputPointType &point) const |
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| OutputCovariantVectorType | TransformCovariantVector (const InputCovariantVectorType &) const override |
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| virtual OutputCovariantVectorType | TransformCovariantVector (const InputCovariantVectorType &vector, const InputPointType &point) const |
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| virtual OutputVectorPixelType | TransformCovariantVector (const InputVectorPixelType &vector, const InputPointType &point) const |
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| void | SetParameters (const ParametersType ¶ms) override |
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| void | ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &j) const override |
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| virtual void | SetCoordinateTolerance (double _arg) |
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| virtual double | GetCoordinateTolerance () const |
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| virtual void | SetDirectionTolerance (double _arg) |
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| virtual double | GetDirectionTolerance () const |
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| virtual void | ComputeJacobianWithRespectToParametersCachedTemporaries (const InputPointType &p, JacobianType &jacobian, JacobianType &cachedJacobian) const |
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| virtual void | ComputeJacobianWithRespectToParametersCachedTemporaries (const InputPointType &p, JacobianType &jacobian, JacobianType &cachedJacobian) const |
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| void | CopyInFixedParameters (const FixedParametersValueType *const begin, const FixedParametersValueType *const end) override |
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| void | CopyInFixedParameters (const FixedParametersValueType *const begin, const FixedParametersValueType *const end) override |
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| void | CopyInParameters (const ParametersValueType *const begin, const ParametersValueType *const end) override |
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| void | CopyInParameters (const ParametersValueType *const begin, const ParametersValueType *const end) override |
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| const FixedParametersType & | GetFixedParameters () const override |
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| const FixedParametersType & | GetFixedParameters () const override |
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| unsigned int | GetInputSpaceDimension () const override |
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| unsigned int | GetInputSpaceDimension () const override |
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| bool | GetInverse (Self *inverseTransform) const |
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| bool | GetInverse (Self *inverseTransform) const |
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| const char * | GetNameOfClass () const override |
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| const char * | GetNameOfClass () const override |
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| virtual NumberOfParametersType | GetNumberOfFixedParameters () const |
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| virtual NumberOfParametersType | GetNumberOfFixedParameters () const |
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| NumberOfParametersType | GetNumberOfParameters () const override |
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| NumberOfParametersType | GetNumberOfParameters () const override |
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| unsigned int | GetOutputSpaceDimension () const override |
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| unsigned int | GetOutputSpaceDimension () const override |
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| const ParametersType & | GetParameters () const override |
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| const ParametersType & | GetParameters () const override |
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| TransformCategoryEnum | GetTransformCategory () const override |
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| TransformCategoryEnum | GetTransformCategory () const override |
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| std::string | GetTransformTypeAsString () const override |
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| std::string | GetTransformTypeAsString () const override |
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| virtual bool | IsLinear () const |
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| virtual bool | IsLinear () const |
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| | itkCloneMacro (Self) |
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| | itkCloneMacro (Self) |
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| void | SetParametersByValue (const ParametersType &p) override |
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| void | SetParametersByValue (const ParametersType &p) override |
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| virtual OutputSymmetricSecondRankTensorType | TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &inputTensor, const InputPointType &point) const |
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| virtual OutputSymmetricSecondRankTensorType | TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &inputTensor, const InputPointType &point) const |
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| virtual OutputSymmetricSecondRankTensorType | TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &tensor) const |
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| virtual OutputSymmetricSecondRankTensorType | TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &tensor) const |
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| virtual OutputVectorPixelType | TransformSymmetricSecondRankTensor (const InputVectorPixelType &inputTensor, const InputPointType &point) const |
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| virtual OutputVectorPixelType | TransformSymmetricSecondRankTensor (const InputVectorPixelType &inputTensor, const InputPointType &point) const |
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| virtual OutputVectorPixelType | TransformSymmetricSecondRankTensor (const InputVectorPixelType &tensor) const |
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| virtual OutputVectorPixelType | TransformSymmetricSecondRankTensor (const InputVectorPixelType &tensor) const |
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| std::enable_if_t< TImage::ImageDimension==VInputDimension &&TImage::ImageDimension==VOutputDimension, void > | ApplyToImageMetadata (TImage *image) const |
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| std::enable_if_t< TImage::ImageDimension==VInputDimension &&TImage::ImageDimension==VOutputDimension, void > | ApplyToImageMetadata (SmartPointer< TImage > image) const |
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| std::enable_if_t< TImage::ImageDimension==VInputDimension &&TImage::ImageDimension==VOutputDimension, void > | ApplyToImageMetadata (TImage *image) const |
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| std::enable_if_t< TImage::ImageDimension==VInputDimension &&TImage::ImageDimension==VOutputDimension, void > | ApplyToImageMetadata (SmartPointer< TImage > image) const |
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| | ITK_DISALLOW_COPY_AND_MOVE (TransformBaseTemplate) |
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| | itkGetConstReferenceMacro (InputSpaceName, std::string) |
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| | itkGetConstReferenceMacro (OutputSpaceName, std::string) |
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| | itkOverrideGetNameOfClassMacro (TransformBaseTemplate) |
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| | itkSetMacro (InputSpaceName, std::string) |
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| | itkSetMacro (OutputSpaceName, std::string) |
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| virtual void | SetFixedParameters (const FixedParametersType &)=0 |
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| virtual void | SetParameters (const ParametersType &)=0 |
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| virtual void | SetParametersByValue (const ParametersType &p)=0 |
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Inheritance diagram for itk::TimeVaryingVelocityFieldTransform< TParametersValueType, VDimension >:
1.13.2